X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/a231a2dd4bf47b519e214329ab71e06b6f99d310..921c13a95c2d13c94de74601e5bc26e5b0c71c31:/apps/workbench/app/helpers/provenance_helper.rb

diff --git a/apps/workbench/app/helpers/provenance_helper.rb b/apps/workbench/app/helpers/provenance_helper.rb
index 73b4a47767..66754d20b2 100644
--- a/apps/workbench/app/helpers/provenance_helper.rb
+++ b/apps/workbench/app/helpers/provenance_helper.rb
@@ -7,13 +7,15 @@ module ProvenanceHelper
       @visited = {}
       @jobs = {}
     end
-
+    
     def self.collection_uuid(uuid)
-      m = /^([a-f0-9]{32}(\+[0-9]+)?)(\+.*)?$/.match(uuid.to_s)
+      m = CollectionsHelper.match(uuid)
       if m
-        #if m[2]
-        return m[1]
-        #else
+        if m[2]
+          return m[1]+m[2]
+        else
+          return m[1]
+        end
         #  Collection.where(uuid: ['contains', m[1]]).each do |u|
         #    puts "fixup #{uuid} to #{u.uuid}"
         #    return u.uuid
@@ -24,33 +26,43 @@ module ProvenanceHelper
       end
     end
 
+    def url_for u
+      p = { :host => @opts[:request].host, 
+        :port => @opts[:request].port,
+        :protocol => @opts[:request].protocol }
+      p.merge! u
+      Rails.application.routes.url_helpers.url_for (p)      
+    end 
+
     def determine_fillcolor(n)
-      bgcolor = ""
-      case n
-      when 1
-        bgcolor = "style=filled,fillcolor=\"#88ff88\""
-      when 2
-        bgcolor = "style=filled,fillcolor=\"#8888ff\""
-      when 3
-        bgcolor = "style=filled,fillcolor=\"#88ffff\""
-      end
-      bgcolor
+      fillcolor = %w(aaaaaa aaffaa aaaaff aaaaaa ffaaaa)[n || 0] || 'aaaaaa'
+      "style=filled,fillcolor=\"##{fillcolor}\""
     end
 
     def describe_node(uuid)
+      uuid = uuid.to_sym
       bgcolor = determine_fillcolor @opts[:pips][uuid] if @opts[:pips]
 
       rsc = ArvadosBase::resource_class_for_uuid uuid.to_s
       if rsc
-        href = "/#{rsc.to_s.underscore.pluralize rsc}/#{uuid}"
+        href = url_for ({:controller => rsc.to_s.tableize, 
+                          :action => :show, 
+                          :id => uuid.to_s })
       
         #"\"#{uuid}\" [label=\"#{rsc}\\n#{uuid}\",href=\"#{href}\"];\n"
         if rsc == Collection
+          #puts uuid
+          if uuid == :"d41d8cd98f00b204e9800998ecf8427e+0"
+            # special case
+            #puts "empty!"
+            return "\"#{uuid}\" [label=\"(empty collection)\"];\n"
+          end
+          puts "#{uuid.class} #{@pdata[uuid]}"
           if @pdata[uuid] 
             #puts @pdata[uuid]
             if @pdata[uuid][:name]
               return "\"#{uuid}\" [label=\"#{@pdata[uuid][:name]}\",href=\"#{href}\",shape=oval,#{bgcolor}];\n"
-            else
+            else              
               files = nil
               if @pdata[uuid].respond_to? :files
                 files = @pdata[uuid].files
@@ -69,12 +81,13 @@ module ProvenanceHelper
                 if i < files.length
                   label += "\\n&vellip;"
                 end
+                #puts "#{uuid} #{label} #{files}"
                 return "\"#{uuid}\" [label=\"#{label}\",href=\"#{href}\",shape=oval,#{bgcolor}];\n"
               end
             end  
           end
-          return "\"#{uuid}\" [label=\"#{rsc}\",href=\"#{href}\",#{bgcolor}];\n"
         end
+        return "\"#{uuid}\" [label=\"#{rsc}\",href=\"#{href}\",#{bgcolor}];\n"
       end
       "\"#{uuid}\" [#{bgcolor}];\n"
     end
@@ -101,7 +114,7 @@ module ProvenanceHelper
         gr = "\"#{head}\" -> \"#{tail}\""
       end
       if extra.length > 0
-        gr += "["
+        gr += " ["
         extra.each do |k, v|
           gr += "#{k}=\"#{v}\","
         end
@@ -113,45 +126,45 @@ module ProvenanceHelper
 
     def script_param_edges(job, prefix, sp)
       gr = ""
-      if sp and not sp.empty?
-        case sp
-        when Hash
-          sp.each do |k, v|
-            if prefix.size > 0
-              k = prefix + "::" + k.to_s
-            end
-            gr += script_param_edges(job, k.to_s, v)
-          end
-        when Array
-          i = 0
-          node = ""
-          sp.each do |v|
-            if GenerateGraph::collection_uuid(v)
-              gr += script_param_edges(job, "#{prefix}[#{i}]", v)
-            else
-              node += "', '" unless node == ""
-              node = "['" if node == ""
-              node += "#{v}"
-            end
-            i += 1
-          end
-          unless node == ""
-            node += "']"
-            #puts node
-            #id = "#{job[:uuid]}_#{prefix}"
-            gr += "\"#{node}\" [label=\"#{node}\"];\n"
-            gr += edge(job_uuid(job), node, {:label => prefix})        
+      case sp
+      when Hash
+        sp.each do |k, v|
+          if prefix.size > 0
+            k = prefix + "::" + k.to_s
           end
-        else
-          m = GenerateGraph::collection_uuid(sp)
-          if m
-            gr += edge(job_uuid(job), m, {:label => prefix})
-            gr += generate_provenance_edges(m)
+          gr += script_param_edges(job, k.to_s, v)
+        end
+      when Array
+        i = 0
+        node = ""
+        sp.each do |v|
+          if GenerateGraph::collection_uuid(v)
+            gr += script_param_edges(job, "#{prefix}[#{i}]", v)
           elsif @opts[:all_script_parameters]
-            #id = "#{job[:uuid]}_#{prefix}"
-            gr += "\"#{sp}\" [label=\"#{sp}\"];\n"
-            gr += edge(job_uuid(job), sp, {:label => prefix})
+            node += "', '" unless node == ""
+            node = "['" if node == ""
+            node += "#{v}"
           end
+          i += 1
+        end
+        unless node == ""
+          node += "']"
+          #puts node
+          #id = "#{job[:uuid]}_#{prefix}"
+          gr += "\"#{node}\" [label=\"#{node}\"];\n"
+          gr += edge(job_uuid(job), node, {:label => prefix})        
+        end
+      when String
+        return '' if sp.empty?
+        m = GenerateGraph::collection_uuid(sp)
+        #puts "#{m} pdata is #{@pdata[m.intern]}"
+        if m and (@pdata[m.intern] or (not @opts[:pdata_only]))
+          gr += edge(job_uuid(job), m, {:label => prefix})
+          gr += generate_provenance_edges(m)
+        elsif @opts[:all_script_parameters]
+          #id = "#{job[:uuid]}_#{prefix}"
+          gr += "\"#{sp}\" [label=\"#{sp}\"];\n"
+          gr += edge(job_uuid(job), sp, {:label => prefix})
         end
       end
       gr
@@ -182,6 +195,11 @@ module ProvenanceHelper
         # uuid is a collection
         gr += describe_node(uuid)
 
+        if m == :"d41d8cd98f00b204e9800998ecf8427e+0"
+          # empty collection, don't follow any further
+          return gr
+        end
+
         @pdata.each do |k, job|
           if job[:output] == uuid.to_s
             gr += edge(uuid, job_uuid(job), {:label => "output"})
@@ -206,6 +224,8 @@ module ProvenanceHelper
               gr += edge(job_uuid(job), job[:script_version], {:label => "script_version"})
             end
           end
+        elsif rsc == Link
+          # do nothing
         else
           gr += describe_node(uuid)
         end
@@ -213,8 +233,12 @@ module ProvenanceHelper
 
       @pdata.each do |k, link|
         if link[:head_uuid] == uuid.to_s and link[:link_class] == "provenance"
+          href = url_for ({:controller => Link.to_s.tableize, 
+                            :action => :show, 
+                            :id => link[:uuid] })
+
           gr += describe_node(link[:tail_uuid])
-          gr += edge(link[:head_uuid], link[:tail_uuid], {:label => link[:name], :href => "/links/#{link[:uuid]}"}) 
+          gr += edge(link[:head_uuid], link[:tail_uuid], {:label => link[:name], :href => href}) 
           gr += generate_provenance_edges(link[:tail_uuid])
         end
       end
@@ -227,7 +251,10 @@ module ProvenanceHelper
     def describe_jobs
       gr = ""
       @jobs.each do |k, v|
-        gr += "\"#{k}\" [href=\"/jobs?"
+        href = url_for ({:controller => Job.to_s.tableize, 
+                          :action => :index })
+
+        gr += "\"#{k}\" [href=\"#{href}?"
         
         n = 0
         v.each do |u|
@@ -238,11 +265,11 @@ module ProvenanceHelper
         gr += "\",label=\""
         
         if @opts[:combine_jobs] == :script_only
-          gr += uuid = "#{v[0][:script]}"
+          gr += "#{v[0][:script]}"
         elsif @opts[:combine_jobs] == :script_and_version
-          gr += uuid = "#{v[0][:script]}"
+          gr += "#{v[0][:script]}" # Just show the name but the nodes will be distinct
         else
-          gr += uuid = "#{v[0][:script]}\\n#{v[0][:finished_at]}"
+          gr += "#{v[0][:script]}\\n#{v[0][:finished_at]}"
         end
         gr += "\",#{determine_fillcolor n}];\n"
       end
@@ -265,8 +292,8 @@ module ProvenanceHelper
     end
     
     gr = """strict digraph {
-node [fontsize=8,shape=box];
-edge [fontsize=8];
+node [fontsize=10,shape=box];
+edge [fontsize=10];
 """
 
     if opts[:direction] == :bottom_up
@@ -286,8 +313,8 @@ edge [fontsize=8];
     gr += "}"
     svg = ""
 
-    #puts gr
-
+    puts gr
+    
     require 'open3'
 
     Open3.popen2("dot", "-Tsvg") do |stdin, stdout, wait_thr|
@@ -305,17 +332,17 @@ edge [fontsize=8];
 
   def self.find_collections(sp)
     c = []
-    if sp and not sp.empty?
-      case sp
-      when Hash
-        sp.each do |k, v|
-          c.concat(find_collections(v))
-        end
-      when Array
-        sp.each do |v|
-          c.concat(find_collections(v))
-        end
-      else
+    case sp
+    when Hash
+      sp.each do |k, v|
+        c.concat(find_collections(v))
+      end
+    when Array
+      sp.each do |v|
+        c.concat(find_collections(v))
+      end
+    when String
+      if !sp.empty?
         m = GenerateGraph::collection_uuid(sp)
         if m
           c << m