X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/a1fc48d0bdba5062da9d8ea57e2cda805421aab8..8722cd175d66ae707ba1ce2efa15b572678f545c:/sdk/cli/bin/crunch-job diff --git a/sdk/cli/bin/crunch-job b/sdk/cli/bin/crunch-job index 9c9d9c1ec9..462b78c5f8 100755 --- a/sdk/cli/bin/crunch-job +++ b/sdk/cli/bin/crunch-job @@ -82,6 +82,7 @@ use IPC::Open2; use IO::Select; use File::Temp; use Fcntl ':flock'; +use File::Path qw( make_path ); $ENV{"TMPDIR"} ||= "/tmp"; unless (defined $ENV{"CRUNCH_TMP"}) { @@ -91,20 +92,17 @@ unless (defined $ENV{"CRUNCH_TMP"}) { $ENV{"CRUNCH_TMP"} .= "-$<"; } } + +# Create the tmp directory if it does not exist +if ( ! -d $ENV{"CRUNCH_TMP"} ) { + make_path $ENV{"CRUNCH_TMP"} or die "Failed to create temporary working directory: " . $ENV{"CRUNCH_TMP"}; +} + $ENV{"JOB_WORK"} = $ENV{"CRUNCH_TMP"} . "/work"; $ENV{"CRUNCH_INSTALL"} = "$ENV{CRUNCH_TMP}/opt"; $ENV{"CRUNCH_WORK"} = $ENV{"JOB_WORK"}; # deprecated mkdir ($ENV{"JOB_WORK"}); -my $arv_cli; - -if (defined $ENV{"ARV_CLI"}) { - $arv_cli = $ENV{"ARV_CLI"}; -} -else { - $arv_cli = 'arv'; -} - my $force_unlock; my $git_dir; my $jobspec; @@ -841,7 +839,7 @@ if ($job_has_uuid) { if ($collated_output) { eval { - open(my $orig_manifest, '-|', 'arv', 'keep', 'get', $collated_output) + open(my $orig_manifest, '-|', 'arv-get', $collated_output) or die "failed to get collated manifest: $!"; # Read the original manifest, and strip permission hints from it, # so we can put the result in a Collection. @@ -994,27 +992,29 @@ sub reapchildren push @freeslot, $proc{$pid}->{slot}; delete $proc{$pid}; - # Load new tasks - my $newtask_list = []; - my $newtask_results; - do { - $newtask_results = $arv->{'job_tasks'}->{'list'}->execute( - 'where' => { - 'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid} - }, - 'order' => 'qsequence', - 'offset' => scalar(@$newtask_list), - ); - push(@$newtask_list, @{$newtask_results->{items}}); - } while (@{$newtask_results->{items}}); - foreach my $arvados_task (@$newtask_list) { - my $jobstep = { - 'level' => $arvados_task->{'sequence'}, - 'failures' => 0, - 'arvados_task' => $arvados_task - }; - push @jobstep, $jobstep; - push @jobstep_todo, $#jobstep; + if ($task_success) { + # Load new tasks + my $newtask_list = []; + my $newtask_results; + do { + $newtask_results = $arv->{'job_tasks'}->{'list'}->execute( + 'where' => { + 'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid} + }, + 'order' => 'qsequence', + 'offset' => scalar(@$newtask_list), + ); + push(@$newtask_list, @{$newtask_results->{items}}); + } while (@{$newtask_results->{items}}); + foreach my $arvados_task (@$newtask_list) { + my $jobstep = { + 'level' => $arvados_task->{'sequence'}, + 'failures' => 0, + 'arvados_task' => $arvados_task + }; + push @jobstep, $jobstep; + push @jobstep_todo, $#jobstep; + } } $progress_is_dirty = 1; @@ -1179,7 +1179,7 @@ sub fetch_block my $hash = shift; my ($keep, $child_out, $output_block); - my $cmd = "$arv_cli keep get \Q$hash\E"; + my $cmd = "arv-get \Q$hash\E"; open($keep, '-|', $cmd) or die "fetch_block: $cmd: $!"; sysread($keep, $output_block, 64 * 1024 * 1024); close $keep; @@ -1191,7 +1191,7 @@ sub collate_output Log (undef, "collate"); my ($child_out, $child_in); - my $pid = open2($child_out, $child_in, $arv_cli, 'keep', 'put', '--raw'); + my $pid = open2($child_out, $child_in, 'arv-put', '--raw'); my $joboutput; for (@jobstep) { @@ -1228,7 +1228,7 @@ sub collate_output sysread($child_out, $joboutput, 64 * 1024 * 1024); chomp($joboutput); } else { - Log (undef, "timed out reading from 'arv keep put'"); + Log (undef, "timed out reading from 'arv-put'"); } } waitpid($pid, 0); @@ -1341,7 +1341,7 @@ sub save_meta return if $justcheckpoint; # checkpointing is not relevant post-Warehouse.pm $local_logfile->flush; - my $cmd = "$arv_cli keep put --filename ''\Q$keep_logfile\E " + my $cmd = "arv-put --filename ''\Q$keep_logfile\E " . quotemeta($local_logfile->filename); my $loglocator = `$cmd`; die "system $cmd failed: $?" if $?;