X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/9d035125ea1f8b6bd32fa6f862b32ba9308ebc66..ae6ced575905d226963516bb7780c2bae391621c:/sdk/cwl/arvados_cwl/__init__.py diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py index 511f173eb0..8f2102c6c3 100644 --- a/sdk/cwl/arvados_cwl/__init__.py +++ b/sdk/cwl/arvados_cwl/__init__.py @@ -168,16 +168,26 @@ class ArvadosJob(object): runtime_constraints["min_ram_mb_per_node"] = resources.get("ram") runtime_constraints["min_scratch_mb_per_node"] = resources.get("tmpdirSize", 0) + resources.get("outdirSize", 0) + filters = [["repository", "=", "arvados"], + ["script", "=", "crunchrunner"], + ["script_version", "in git", "9e5b98e8f5f4727856b53447191f9c06e3da2ba6"]] + if not self.arvrunner.ignore_docker_for_reuse: + filters.append(["docker_image_locator", "in docker", runtime_constraints["docker_image"]]) + try: - response = self.arvrunner.api.jobs().create(body={ - "owner_uuid": self.arvrunner.project_uuid, - "script": "crunchrunner", - "repository": "arvados", - "script_version": "master", - "minimum_script_version": "9e5b98e8f5f4727856b53447191f9c06e3da2ba6", - "script_parameters": {"tasks": [script_parameters]}, - "runtime_constraints": runtime_constraints - }, find_or_create=kwargs.get("enable_reuse", True)).execute(num_retries=self.arvrunner.num_retries) + response = self.arvrunner.api.jobs().create( + body={ + "owner_uuid": self.arvrunner.project_uuid, + "script": "crunchrunner", + "repository": "arvados", + "script_version": "master", + "minimum_script_version": "9e5b98e8f5f4727856b53447191f9c06e3da2ba6", + "script_parameters": {"tasks": [script_parameters]}, + "runtime_constraints": runtime_constraints + }, + filters=filters, + find_or_create=kwargs.get("enable_reuse", True) + ).execute(num_retries=self.arvrunner.num_retries) self.arvrunner.jobs[response["uuid"]] = self @@ -356,6 +366,7 @@ class RunnerJob(object): self.job_order["cwl:tool"] = workflowmapper.mapper(self.tool.tool["id"])[1] response = self.arvrunner.api.jobs().create(body={ + "owner_uuid": self.arvrunner.project_uuid, "script": "cwl-runner", "script_version": "master", "repository": "arvados", @@ -538,6 +549,8 @@ class ArvCwlRunner(object): events = arvados.events.subscribe(arvados.api('v1'), [["object_uuid", "is_a", "arvados#job"]], self.on_message) + self.debug = args.debug + self.ignore_docker_for_reuse = args.ignore_docker_for_reuse self.fs_access = CollectionFsAccess(input_basedir) kwargs["fs_access"] = self.fs_access @@ -633,6 +646,9 @@ def main(args, stdout, stderr, api_client=None): help="") parser.add_argument("--project-uuid", type=str, help="Project that will own the workflow jobs") + parser.add_argument("--ignore-docker-for-reuse", action="store_true", + help="Ignore Docker image version when deciding whether to reuse past jobs.", + default=False) exgroup = parser.add_mutually_exclusive_group() exgroup.add_argument("--submit", action="store_true", help="Submit workflow to run on Arvados.",