X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/926c011fb4f7a4d7722b88a19afed51c5d4bd1c4..HEAD:/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml diff --git a/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml b/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml index 0e81347d72..0e51d50080 100644 --- a/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml +++ b/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml @@ -328,3 +328,106 @@ $graph: doc: | Maximum number of GPU devices to request. If not specified, same as `cudaDeviceCountMin`. + +- name: UsePreemptible + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Specify a workflow step should opt-in or opt-out of using preemptible (spot) instances. + fields: + class: + type: string + doc: "Always 'arv:UsePreemptible" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + usePreemptible: boolean + +- name: OutputCollectionProperties + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Specify metadata properties that will be set on the output + collection associated with this workflow or step. + fields: + class: + type: string + doc: "Always 'arv:OutputCollectionProperties" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + outputProperties: + type: PropertyDef[] + jsonldPredicate: + mapSubject: propertyName + mapPredicate: propertyValue + + +- name: KeepCacheType + type: enum + symbols: + - ram_cache + - disk_cache + doc: + - | + ram_cache: Keep blocks will be cached in RAM only. + - | + disk_cache: Keep blocks will be cached to disk and + memory-mapped. The disk cache leverages the kernel's virtual + memory system so "hot" data will generally still be kept in + RAM. + +- name: KeepCacheTypeRequirement + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Choose keep cache strategy. + fields: + - name: class + type: string + doc: "'arv:KeepCacheTypeRequirement'" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + - name: keepCacheType + type: KeepCacheType? + doc: | + Whether Keep blocks loaded by arv-mount should be kept in RAM + only or written to disk and memory-mapped. The disk cache + leverages the kernel's virtual memory system so "hot" data will + generally still be kept in RAM. + +- name: OutOfMemoryRetry + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Detect when a failed tool run may have run out of memory, and + re-submit the container with more RAM. + fields: + - name: class + type: string + doc: "'arv:OutOfMemoryRetry" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + - name: memoryErrorRegex + type: string? + doc: | + A regular expression that will be used on the text of stdout + and stderr produced by the tool to determine if a failed job + should be retried with more RAM. By default, searches for the + substrings 'bad_alloc' and 'OutOfMemory'. + - name: memoryRetryMultiplier + type: float? + doc: | + If the container failed on its first run, re-submit the + container with the RAM request multiplied by this factor. + - name: memoryRetryMultipler + type: float? + doc: | + Deprecated misspelling of "memoryRetryMultiplier". Kept only + for backwards compatability, don't use this.