X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/88b5b089f38a587292bb68772251b8275c0e27c7..7df2da959b583d3646b9fde606f9e74d598d4bb9:/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid diff --git a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid index fbe6786b52..277b9664e9 100644 --- a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid +++ b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid @@ -4,12 +4,21 @@ navsection: userguide title: "Running a pipeline using Workbench" ... -# Go to "Collections":http://{{ site.arvados_workbench_host }}/collections -# Go to the search box and search for "tutorial". -# This should yield a collection with the contents "var-GS000016015-ASM.tsv.bz2" -# Click on the check box to the left of "var-GS000016015-ASM.tsv.bz2". This puts the collection in your persistent selection list. Click on the paperclip in the upper right to see your selections. -# Click on "Pipeline templates":http://{{ site.arvados_workbench_host }}/pipeline_templates -# Look for a pipeline named "Tutorial pipeline" -# Click on the play button on the left. This will take you to the new pipeline page. -# Next to "input" click on "none" to set the input value. At the top of the list will be the collection that you selected in step 4. -# You can now click on "Run pipeline" in the upper right to start the pipeline. +notextile.
+ +# Go to "Collections":https://{{ site.arvados_workbench_host }}/collections (*Data* %(rarr)→% *Collections (data files)*). +# On the Collections page, go to the search box and search for "tutorial". +# The results should include a collection with the contents *var-GS000016015-ASM.tsv.bz2*. +# Click on the check box to the left of *var-GS000016015-ASM.tsv.bz2*. This puts the collection in your persistent selection list. You can click on the paperclip in the upper right to review your current selections. +# Go to "Pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_templates (*Compute* %(rarr)→% *Pipeline templates*). +# Look for a pipeline named *Tutorial pipeline*. +# Click on the play button to the left of *Tutorial pipeline*. This will take you to a new page to configure the pipeline. +# Under the *parameter* column, look for *input*. Set the value of *input* by clicking on *none* to get a selection popup. The collection that you selected in step 4 will be at the top of that pulldown menu. Select that collection in the pulldown menu. +# You can now click on the *Run pipeline* button in the upper right to start the pipeline. A new page shows the pipeline status, queued to run. +# The page refreshes automatically every 15 seconds. You should see the pipeline running, and then finish successfully. +# Once the pipeline is finished, click on the link under the *output* column. This will take you to the collection page for the output of this pipeline. +# Click on *md5sum.txt* to see the actual file that is the output of this pipeline. +# Go back to the collection page for the result. Click on the *Provenance graph* tab to see a graph illustrating the collections and scripts that were used to generate this file. + +notextile.
+