X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/8128b451b8e3161ae3db8b7e1858f6eef8105c9f..8a0eb69984a93852ec888cd3e02b778b0be758ed:/sdk/python/arvados/stream.py diff --git a/sdk/python/arvados/stream.py b/sdk/python/arvados/stream.py index 75b23cc026..afc202e180 100644 --- a/sdk/python/arvados/stream.py +++ b/sdk/python/arvados/stream.py @@ -6,65 +6,13 @@ import threading import functools import copy -from .ranges import * -from .arvfile import ArvadosFileBase, StreamFileReader +from ._ranges import locators_and_ranges, Range +from .arvfile import StreamFileReader from arvados.retry import retry_method from keep import * import config import errors - -def locator_block_size(loc): - s = re.match(r'[0-9a-f]{32}\+(\d+)(\+\S+)*', loc) - return long(s.group(1)) - -def normalize_stream(s, stream): - ''' - s is the stream name - stream is a dict mapping each filename to a list in the form [block locator, block size, segment offset (from beginning of block), segment size] - returns the stream as a list of tokens - ''' - stream_tokens = [s] - sortedfiles = list(stream.keys()) - sortedfiles.sort() - - blocks = {} - streamoffset = 0L - # Go through each file and add each referenced block exactly once. - for f in sortedfiles: - for b in stream[f]: - if b.locator not in blocks: - stream_tokens.append(b.locator) - blocks[b.locator] = streamoffset - streamoffset += locator_block_size(b.locator) - - # Add the empty block if the stream is otherwise empty. - if len(stream_tokens) == 1: - stream_tokens.append(config.EMPTY_BLOCK_LOCATOR) - - for f in sortedfiles: - # Add in file segments - current_span = None - fout = f.replace(' ', '\\040') - for segment in stream[f]: - # Collapse adjacent segments - streamoffset = blocks[segment.locator] + segment.segment_offset - if current_span is None: - current_span = [streamoffset, streamoffset + segment.segment_size] - else: - if streamoffset == current_span[1]: - current_span[1] += segment.segment_size - else: - stream_tokens.append("{0}:{1}:{2}".format(current_span[0], current_span[1] - current_span[0], fout)) - current_span = [streamoffset, streamoffset + segment.segment_size] - - if current_span is not None: - stream_tokens.append("{0}:{1}:{2}".format(current_span[0], current_span[1] - current_span[0], fout)) - - if not stream[f]: - stream_tokens.append("0:0:{0}".format(fout)) - - return stream_tokens - +from _normalize_stream import normalize_stream class StreamReader(object): def __init__(self, tokens, keep=None, debug=False, _empty=False, @@ -87,7 +35,7 @@ class StreamReader(object): s = re.match(r'^[0-9a-f]{32}\+(\d+)(\+\S+)*$', tok) if s: blocksize = long(s.group(1)) - self._data_locators.append(Range(tok, streamoffset, blocksize)) + self._data_locators.append(Range(tok, streamoffset, blocksize, 0)) streamoffset += blocksize continue @@ -97,7 +45,7 @@ class StreamReader(object): size = long(s.group(2)) name = s.group(3).replace('\\040', ' ') if name not in self._files: - self._files[name] = StreamFileReader(self, [Range(pos, 0, size)], name) + self._files[name] = StreamFileReader(self, [Range(pos, 0, size, 0)], name) else: filereader = self._files[name] filereader.segments.append(Range(pos, filereader.size(), size)) @@ -114,13 +62,10 @@ class StreamReader(object): def all_files(self): return self._files.values() - def _size(self): + def size(self): n = self._data_locators[-1] return n.range_start + n.range_size - def size(self): - return self._size() - def locators_and_ranges(self, range_start, range_size): return locators_and_ranges(self._data_locators, range_start, range_size) @@ -130,10 +75,6 @@ class StreamReader(object): @retry_method def readfrom(self, start, size, num_retries=None): - return self._readfrom(start, size, num_retries=num_retries) - - @retry_method - def _readfrom(self, start, size, num_retries=None): """Read up to 'size' bytes from the stream, starting at 'start'""" if size == 0: return ''