X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/78ca9c5cd0c2088b7c4ae0a9062318977a94f0a5..0fccbb05425c59e5b2c13954dcb73ec79043f879:/doc/user/index.html.textile.liquid diff --git a/doc/user/index.html.textile.liquid b/doc/user/index.html.textile.liquid index b108ff7077..e24afc9a44 100644 --- a/doc/user/index.html.textile.liquid +++ b/doc/user/index.html.textile.liquid @@ -1,23 +1,19 @@ --- layout: default navsection: userguide -title: Welcome to Arvados! +title: Welcome to Arvados™! ... +{% comment %} +Copyright (C) The Arvados Authors. All rights reserved. -_If you are new to Arvados, please read the "Getting Started":{{site.baseurl}}/start/index.html guide for a quick introduction to working with Arvados._ +SPDX-License-Identifier: CC-BY-SA-3.0 +{% endcomment %} -This guide provides a reference for using Arvados to solve big data bioinformatics problems, including: +Arvados is an "open source":copying/copying.html platform for managing, processing, and sharing genomic and other large scientific and biomedical data. With Arvados, bioinformaticians run and scale compute-intensive workflows, developers create biomedical applications, and IT administrators manage large compute and storage resources. -* Robust storage of very large files, such as whole genome sequences, using the "Arvados Keep":{{site.baseurl}}/user/tutorials/tutorial-keep.html content-addressable cluster file system. -* Running compute-intensive genomic analysis pipelines, such as alignment and variant calls using the "Arvados Crunch":{{site.baseurl}}/user/tutorials/intro-crunch.html cluster compute engine. -* Storing and querying metadata about genome sequence files, such as human subjects and their phenotypic traits using the "Arvados Metadata Database.":{{site.baseurl}}/user/topics/tutorial-trait-search.html -* Accessing, organizing, and sharing data, pipelines and results using the "Arvados Workbench":{{site.baseurl}}/user/getting_started/workbench.html web application. +This guide provides a reference for using Arvados to solve scientific big data problems. -This User Guide goes into more depth than the "Getting Started guide":{{site.baseurl}}/start/index.html, covers how to develop your own pipelines in addition to using pre-existing pipelines, covers the Arvados commandline tools in addition to the Workbench graphical interface to Arvados, and can be referenced in any order. - -The examples in this guide use the Arvados instance located at https://{{ site.arvados_workbench_host }}. If you are using a different Arvados instance replace @{{ site.arvados_workbench_host }}@ with your private instance in all of the examples in this guide. - -Curoverse maintains a public Arvados instance located at https://workbench.qr1hi.arvadosapi.com/. You must have an account in order to use this service. If you would like to request an account, please send an email to "arvados@curoverse.com":mailto:arvados@curoverse.com. +The examples in this guide use the Arvados instance located at {{site.arvados_workbench_host}}. If you are using a different Arvados instance replace @{{ site.arvados_workbench_host }}@ with your private instance in all of the examples in this guide. h2. Typographic conventions