X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/7865723dc5eee129e7ac269f3495274a13ff70ae..c62e8c7eb9f864f6d3a8328af83572f0f05958da:/sdk/cwl/arvados_cwl/arvdocker.py diff --git a/sdk/cwl/arvados_cwl/arvdocker.py b/sdk/cwl/arvados_cwl/arvdocker.py index cf0b3b9daf..ae5a434074 100644 --- a/sdk/cwl/arvados_cwl/arvdocker.py +++ b/sdk/cwl/arvados_cwl/arvdocker.py @@ -17,16 +17,12 @@ import arvados.commands.keepdocker logger = logging.getLogger('arvados.cwl-runner') -cached_lookups = {} -cached_lookups_lock = threading.Lock() - def determine_image_id(dockerImageId): for line in ( - subprocess.check_output( # nosec - ["docker", "images", "--no-trunc", "--all"] - ) - .decode("utf-8") - .splitlines() + str(subprocess.check_output( # nosec + ["docker", "images", "--no-trunc", "--all"] + ), "utf-8") + .splitlines() ): try: match = re.match(r"^([^ ]+)\s+([^ ]+)\s+([^ ]+)", line) @@ -56,10 +52,16 @@ def determine_image_id(dockerImageId): return None -def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid, - force_pull, tmp_outdir_prefix, match_local_docker, copy_deps): +def arv_docker_get_image(api_client, dockerRequirement, pull_image, runtimeContext): """Check if a Docker image is available in Keep, if not, upload it using arv-keepdocker.""" + project_uuid = runtimeContext.project_uuid + force_pull = runtimeContext.force_docker_pull + tmp_outdir_prefix = runtimeContext.tmp_outdir_prefix + match_local_docker = runtimeContext.match_local_docker + copy_deps = runtimeContext.copy_deps + cached_lookups = runtimeContext.cached_docker_lookups + if "http://arvados.org/cwl#dockerCollectionPDH" in dockerRequirement: return dockerRequirement["http://arvados.org/cwl#dockerCollectionPDH"] @@ -69,11 +71,8 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid if hasattr(dockerRequirement, 'lc'): dockerRequirement.lc.data["dockerImageId"] = dockerRequirement.lc.data["dockerPull"] - global cached_lookups - global cached_lookups_lock - with cached_lookups_lock: - if dockerRequirement["dockerImageId"] in cached_lookups: - return cached_lookups[dockerRequirement["dockerImageId"]] + if dockerRequirement["dockerImageId"] in cached_lookups: + return cached_lookups[dockerRequirement["dockerImageId"]] with SourceLine(dockerRequirement, "dockerImageId", WorkflowException, logger.isEnabledFor(logging.DEBUG)): sp = dockerRequirement["dockerImageId"].split(":") @@ -121,7 +120,8 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid if not out_of_project_images: # Fetch Docker image if necessary. try: - result = cwltool.docker.DockerCommandLineJob.get_image(dockerRequirement, pull_image, + dockerjob = cwltool.docker.DockerCommandLineJob(None, None, None, None, None, None) + result = dockerjob.get_image(dockerRequirement, pull_image, force_pull, tmp_outdir_prefix) if not result: raise WorkflowException("Docker image '%s' not available" % dockerRequirement["dockerImageId"]) @@ -153,13 +153,6 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid pdh = api_client.collections().get(uuid=images[0][0]).execute()["portable_data_hash"] - with cached_lookups_lock: - cached_lookups[dockerRequirement["dockerImageId"]] = pdh + cached_lookups[dockerRequirement["dockerImageId"]] = pdh return pdh - -def arv_docker_clear_cache(): - global cached_lookups - global cached_lookups_lock - with cached_lookups_lock: - cached_lookups = {}