X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/7850378a1ffb342fba2ba197370e17d1b777326f..22fcbed20b2691bcdfa5854004dcb95aa1f2e40d:/sdk/cwl/arvados_cwl/arvcontainer.py

diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py
index 99d82f3398..c9170c51b7 100644
--- a/sdk/cwl/arvados_cwl/arvcontainer.py
+++ b/sdk/cwl/arvados_cwl/arvcontainer.py
@@ -21,8 +21,7 @@ import ruamel.yaml as yaml
 
 from cwltool.errors import WorkflowException
 from cwltool.process import UnsupportedRequirement, shortname
-from cwltool.pathmapper import adjustFileObjs, adjustDirObjs, visit_class
-from cwltool.utils import aslist
+from cwltool.utils import aslist, adjustFileObjs, adjustDirObjs, visit_class
 from cwltool.job import JobBase
 
 import arvados.collection
@@ -235,7 +234,9 @@ class ArvadosContainer(JobBase):
         container_request["container_image"] = arv_docker_get_image(self.arvrunner.api,
                                                                     docker_req,
                                                                     runtimeContext.pull_image,
-                                                                    runtimeContext.project_uuid)
+                                                                    runtimeContext.project_uuid,
+                                                                    runtimeContext.force_docker_pull,
+                                                                    runtimeContext.tmp_outdir_prefix)
 
         network_req, _ = self.get_requirement("NetworkAccess")
         if network_req:
@@ -272,6 +273,12 @@ class ArvadosContainer(JobBase):
         if self.output_ttl < 0:
             raise WorkflowException("Invalid value %d for output_ttl, cannot be less than zero" % container_request["output_ttl"])
 
+        storage_class_req, _ = self.get_requirement("http://arvados.org/cwl#OutputStorageClass")
+        if storage_class_req and storage_class_req.get("intermediateStorageClass"):
+            container_request["output_storage_classes"] = aslist(storage_class_req["intermediateStorageClass"])
+        else:
+            container_request["output_storage_classes"] = runtimeContext.intermediate_storage_classes.strip().split(",")
+
         if self.timelimit is not None and self.timelimit > 0:
             scheduling_parameters["max_run_time"] = self.timelimit
 
@@ -494,6 +501,9 @@ class RunnerContainer(Runner):
         if runtimeContext.storage_classes != "default":
             command.append("--storage-classes=" + runtimeContext.storage_classes)
 
+        if runtimeContext.intermediate_storage_classes != "default":
+            command.append("--intermediate-storage-classes=" + runtimeContext.intermediate_storage_classes)
+
         if self.on_error:
             command.append("--on-error=" + self.on_error)
 
@@ -546,6 +556,17 @@ class RunnerContainer(Runner):
 
         logger.info("%s submitted container_request %s", self.arvrunner.label(self), response["uuid"])
 
+        workbench1 = self.arvrunner.api.config()["Services"]["Workbench1"]["ExternalURL"]
+        workbench2 = self.arvrunner.api.config()["Services"]["Workbench2"]["ExternalURL"]
+        url = ""
+        if workbench2:
+            url = "{}processes/{}".format(workbench2, response["uuid"])
+        elif workbench1:
+            url = "{}container_requests/{}".format(workbench1, response["uuid"])
+        if url:
+            logger.info("Monitor workflow progress at %s", url)
+
+
     def done(self, record):
         try:
             container = self.arvrunner.api.containers().get(