X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/7791c7e1b09341ce1fed131c6b11c91da8217c3f..a66dcf3c878be422520771e5bde3791248dba001:/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid diff --git a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid index da968c2c83..52dafb7cce 100644 --- a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid +++ b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid @@ -1,8 +1,25 @@ --- layout: default navsection: userguide -navmenu: Tutorials title: "Running a pipeline using Workbench" ... -h1. Running a pipeline using Workbench +notextile.
+ +# Go to "Collections":http://{{ site.arvados_workbench_host }}/collections . +# On the collections page, go to the search box and search for "tutorial". +# This should yield a collection with the contents "var-GS000016015-ASM.tsv.bz2" +# Click on the check box to the left of "var-GS000016015-ASM.tsv.bz2". This puts the collection in your persistent selection list. Click on the paperclip in the upper right to get a dropdown menu listing your current selections. +# Go to "Pipeline templates":http://{{ site.arvados_workbench_host }}/pipeline_templates . +# Look for a pipeline named "Tutorial pipeline". +# Click on the play button to the left of "Tutorial pipeline". This will take you to a new page to configure the pipeline. +# Under *parameter* look for "input". Set the value of "input" by clicking on on "none" to get a editing popup. At the top of the selection list in the editing popup will be the collection that you selected in step 4. +# You can now click on "Run pipeline" in the upper right to start the pipeline. +# This will reload the page with the pipeline queued to run. +# The page refreshes automatically every 15 seconds. You should see the pipeline running, and then finish successfully. +# Once it is finished, click on the link under the *output* column. This will take you to the collection page for the output of this pipeline. +# Click on "md5sum.txt" to see the actual file that is the output of this pipeline. +# On the collection page, click on the "Provenance graph" tab to see a graphical representation of the data elements and pipelines that were involved in generating this file. + +notextile.
+