X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/75aee7b3d5b6c8e84e25e71eefe88040d8a12022..33376dca1c7d97c02c9145e8226203ec74110055:/build/run-library.sh diff --git a/build/run-library.sh b/build/run-library.sh index 67176ad59f..a395db8b77 100755 --- a/build/run-library.sh +++ b/build/run-library.sh @@ -115,6 +115,25 @@ handle_ruby_gem() { fi } +# Usage: package_workbench2 +package_workbench2() { + local pkgname=arvados-workbench2 + local src=services/workbench2 + local dst=/var/www/arvados-workbench2/workbench2 + local description="Arvados Workbench 2" + local version="$(version_from_git)" + cd "$WORKSPACE/$src" + rm -rf ./build + NODE_ENV=production yarn install + VERSION="$version" BUILD_NUMBER="$(default_iteration "$pkgname" "$version" yarn)" GIT_COMMIT="$(git rev-parse HEAD | head -c9)" yarn build + cd "$WORKSPACE/packages/$TARGET" + fpm_build "${WORKSPACE}/$src" "${WORKSPACE}/$src/build/=$dst" "$pkgname" dir "$version" \ + --license="GNU Affero General Public License, version 3.0" \ + --description="${description}" \ + --config-files="/etc/arvados/$pkgname/workbench2.example.json" \ + "$WORKSPACE/services/workbench2/etc/arvados/workbench2/workbench2.example.json=/etc/arvados/$pkgname/workbench2.example.json" +} + calculate_go_package_version() { # $__returnvar has the nameref attribute set, which means it is a reference # to another variable that is passed in as the first argument to this function. @@ -171,12 +190,12 @@ package_go_binary() { fi case "$package_format-$TARGET" in - # Older Debian/Ubuntu do not support cross compilation because the + # Ubuntu 20.04 does not support cross compilation because the # libfuse package does not support multiarch. See # . # Red Hat-based distributions do not support native cross compilation at # all (they use a qemu-based solution we haven't implemented yet). - deb-debian10|deb-ubuntu1804|deb-ubuntu2004|rpm-*) + deb-ubuntu2004|rpm-*) cross_compilation=0 if [[ "$native_arch" == "amd64" ]] && [[ -n "$target_arch" ]] && [[ "$native_arch" != "$target_arch" ]]; then echo "Error: no cross compilation support for Go on $native_arch for $TARGET, can not build $prog for $target_arch" @@ -421,10 +440,10 @@ test_package_presence() { echo "Package $full_pkgname build forced with --force-build, building" elif [[ "$FORMAT" == "deb" ]]; then declare -A dd - dd[debian10]=buster dd[debian11]=bullseye - dd[ubuntu1804]=bionic + dd[debian12]=bookworm dd[ubuntu2004]=focal + dd[ubuntu2204]=jammy D=${dd[$TARGET]} if [ ${pkgname:0:3} = "lib" ]; then repo_subdir=${pkgname:0:4} @@ -448,7 +467,6 @@ test_package_presence() { else local rpm_root case "$TARGET" in - centos7) rpm_root="CentOS/7/dev" ;; rocky8) rpm_root="CentOS/8/dev" ;; *) echo "FIXME: Don't know RPM URL path for $TARGET, building" @@ -572,8 +590,6 @@ handle_cwltest () { # signal to our build script that we want a cwltest executable installed in /usr/bin/ mkdir cwltest/bin && touch cwltest/bin/cwltest fpm_build_virtualenv "cwltest" "cwltest" "$package_format" "$target_arch" - # The python->python3 metapackage - build_metapackage "cwltest" "cwltest" cd "$WORKSPACE" rm -rf "$WORKSPACE/cwltest" } @@ -675,10 +691,7 @@ fpm_build_virtualenv_worker () { ARVADOS_BUILDING_ITERATION=1 fi - local python=$PYTHON3_EXECUTABLE - pip=pip3 PACKAGE_PREFIX=$PYTHON3_PKG_PREFIX - if [[ "$PKG" != "arvados-docker-cleaner" ]]; then PYTHON_PKG=$PACKAGE_PREFIX-$PKG else @@ -689,21 +702,27 @@ fpm_build_virtualenv_worker () { cd $WORKSPACE/$PKG_DIR rm -rf dist/* + local venv_dir="dist/build/usr/lib/$PYTHON_PKG" + echo "Creating virtualenv..." + if ! "$PYTHON3_EXECUTABLE" -m venv "$venv_dir"; then + printf "Error, unable to run\n %s -m venv %s\n" "$PYTHON3_EXECUTABLE" "$venv_dir" + exit 1 + fi - # Get the latest setuptools - if ! $pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U 'setuptools<45'; then - echo "Error, unable to upgrade setuptools with" - echo " $pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U 'setuptools<45'" + local venv_py="$venv_dir/bin/python$PYTHON3_VERSION" + if ! "$venv_py" -m pip install --upgrade $DASHQ_UNLESS_DEBUG $CACHE_FLAG pip setuptools wheel; then + printf "Error, unable to upgrade pip, setuptools, and wheel with + %s -m pip install --upgrade $DASHQ_UNLESS_DEBUG $CACHE_FLAG pip setuptools wheel +" "$venv_py" exit 1 fi + # filter a useless warning (when building the cwltest package) from the stderr output - if ! $python setup.py $DASHQ_UNLESS_DEBUG sdist 2> >(grep -v 'warning: no previously-included files matching'); then - echo "Error, unable to run $python setup.py sdist for $PKG" + if ! "$venv_py" setup.py $DASHQ_UNLESS_DEBUG sdist 2> >(grep -v 'warning: no previously-included files matching'); then + echo "Error, unable to run $venv_py setup.py sdist for $PKG" exit 1 fi - PACKAGE_PATH=`(cd dist; ls *tar.gz)` - if [[ "arvados-python-client" == "$PKG" ]]; then PYSDK_PATH="-f $(pwd)/dist/" fi @@ -722,92 +741,44 @@ fpm_build_virtualenv_worker () { fi # See if we actually need to build this package; does it exist already? - # We can't do this earlier than here, because we need PYTHON_VERSION... - # This isn't so bad; the sdist call above is pretty quick compared to - # the invocation of virtualenv and fpm, below. - if ! test_package_presence "$PYTHON_PKG" "$UNFILTERED_PYTHON_VERSION" "$python" "$ARVADOS_BUILDING_ITERATION" "$target_arch"; then + # We can't do this earlier than here, because we need PYTHON_VERSION. + if ! test_package_presence "$PYTHON_PKG" "$UNFILTERED_PYTHON_VERSION" python3 "$ARVADOS_BUILDING_ITERATION" "$target_arch"; then return 0 fi echo "Building $package_format ($target_arch) package for $PKG from $PKG_DIR" - # Package the sdist in a virtualenv - echo "Creating virtualenv..." - - cd dist - - rm -rf build - rm -f $PYTHON_PKG*deb - echo "virtualenv version: `virtualenv --version`" - virtualenv_command="virtualenv --python `which $python` $DASHQ_UNLESS_DEBUG build/usr/share/$python/dist/$PYTHON_PKG" - - if ! $virtualenv_command; then - echo "Error, unable to run" - echo " $virtualenv_command" + local sdist_path="$(ls dist/*.tar.gz)" + if ! "$venv_py" -m pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PYSDK_PATH "$sdist_path"; then + printf "Error, unable to run + %s -m pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG %s %s +" "$venv_py" "$PYSDK_PATH" "$sdist_path" exit 1 fi - if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U pip; then - echo "Error, unable to upgrade pip with" - echo " build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U pip" - exit 1 - fi - echo "pip version: `build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip --version`" - - if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U 'setuptools<45'; then - echo "Error, unable to upgrade setuptools with" - echo " build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U 'setuptools<45'" - exit 1 - fi - echo "setuptools version: `build/usr/share/$python/dist/$PYTHON_PKG/bin/$python -c 'import setuptools; print(setuptools.__version__)'`" - - if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U wheel; then - echo "Error, unable to upgrade wheel with" - echo " build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U wheel" - exit 1 - fi - echo "wheel version: `build/usr/share/$python/dist/$PYTHON_PKG/bin/wheel version`" - - if [[ "$TARGET" != "centos7" ]] || [[ "$PYTHON_PKG" != "python-arvados-fuse" ]]; then - build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PYSDK_PATH $PACKAGE_PATH - else - # centos7 needs these special tweaks to install python-arvados-fuse - build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG docutils - PYCURL_SSL_LIBRARY=nss build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PYSDK_PATH $PACKAGE_PATH - fi - - if [[ "$?" != "0" ]]; then - echo "Error, unable to run" - echo " build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PYSDK_PATH $PACKAGE_PATH" - exit 1 - fi - - cd build/usr/share/$python/dist/$PYTHON_PKG/ + pushd "$venv_dir" >$STDOUT_IF_DEBUG # Replace the shebang lines in all python scripts, and handle the activate # scripts too. This is a functional replacement of the 237 line # virtualenv_tools.py script that doesn't work in python3 without serious # patching, minus the parts we don't need (modifying pyc files, etc). + local sys_venv_dir="${venv_dir#dist/build/}" + local sys_venv_py="$sys_venv_dir/bin/python$PYTHON3_VERSION" for binfile in `ls bin/`; do - if ! file --mime bin/$binfile |grep -q binary; then - # Not a binary file - if [[ "$binfile" =~ ^activate(.csh|.fish|)$ ]]; then - # these 'activate' scripts need special treatment - sed -i "s/VIRTUAL_ENV=\".*\"/VIRTUAL_ENV=\"\/usr\/share\/$python\/dist\/$PYTHON_PKG\"/" bin/$binfile - sed -i "s/VIRTUAL_ENV \".*\"/VIRTUAL_ENV \"\/usr\/share\/$python\/dist\/$PYTHON_PKG\"/" bin/$binfile - else - if grep -q -E '^#!.*/bin/python\d?' bin/$binfile; then - # Replace shebang line - sed -i "1 s/^.*$/#!\/usr\/share\/$python\/dist\/$PYTHON_PKG\/bin\/python/" bin/$binfile - fi - fi + if file --mime "bin/$binfile" | grep -q binary; then + : # Nothing to do for binary files + elif [[ "$binfile" =~ ^activate(.csh|.fish|)$ ]]; then + sed -ri "s@VIRTUAL_ENV(=| )\".*\"@VIRTUAL_ENV\\1\"/$sys_venv_dir\"@" "bin/$binfile" + else + # Replace shebang line + sed -ri "1 s@^#\![^[:space:]]+/bin/python[0-9.]*@#\!/$sys_venv_py@" "bin/$binfile" fi done - cd - >$STDOUT_IF_DEBUG + popd >$STDOUT_IF_DEBUG + cd dist - find build -iname '*.pyc' -exec rm {} \; - find build -iname '*.pyo' -exec rm {} \; + find build -iname '*.py[co]' -delete # Finally, generate the package echo "Creating package..." @@ -894,26 +865,27 @@ fpm_build_virtualenv_worker () { # make sure the systemd service file ends up in the right place # used by arvados-docker-cleaner if [[ -e "${systemd_unit}" ]]; then - COMMAND_ARR+=("usr/share/$python/dist/$PKG/share/doc/$PKG/$PKG.service=/lib/systemd/system/$PKG.service") + COMMAND_ARR+=("$sys_venv_dir/share/doc/$PKG/$PKG.service=/lib/systemd/system/$PKG.service") fi COMMAND_ARR+=("${fpm_args[@]}") - # Make sure to install all our package binaries in /usr/bin. - # We have to walk $WORKSPACE/$PKG_DIR/bin rather than - # $WORKSPACE/build/usr/share/$python/dist/$PYTHON_PKG/bin/ to get the list - # because the latter also includes all the python binaries for the virtualenv. - # We have to take the copies of our binaries from the latter directory, though, - # because those are the ones we rewrote the shebang line of, above. + # Make sure to install all our package binaries in /usr/bin. We have to + # walk $WORKSPACE/$PKG_DIR/bin rather than $venv_dir/bin to get the list + # because the latter also includes scripts installed by all the + # dependencies in the virtualenv, which may conflict with other + # packages. We have to take the copies of our binaries from the latter + # directory, though, because those are the ones we rewrote the shebang + # line of, above. if [[ -e "$WORKSPACE/$PKG_DIR/bin" ]]; then for binary in `ls $WORKSPACE/$PKG_DIR/bin`; do - COMMAND_ARR+=("usr/share/$python/dist/$PYTHON_PKG/bin/$binary=/usr/bin/") + COMMAND_ARR+=("$sys_venv_dir/bin/$binary=/usr/bin/") done fi # the python3-arvados-cwl-runner package comes with cwltool, expose that version - if [[ -e "$WORKSPACE/$PKG_DIR/dist/build/usr/share/$python/dist/$PYTHON_PKG/bin/cwltool" ]]; then - COMMAND_ARR+=("usr/share/$python/dist/$PYTHON_PKG/bin/cwltool=/usr/bin/") + if [[ -e "$WORKSPACE/$PKG_DIR/$venv_dir/bin/cwltool" ]]; then + COMMAND_ARR+=("$sys_venv_dir/bin/cwltool=/usr/bin/") fi COMMAND_ARR+=(".") @@ -935,138 +907,8 @@ fpm_build_virtualenv_worker () { echo } -# build_metapackage builds meta packages that help with the python to python 3 package migration -build_metapackage() { - # base package name (e.g. arvados-python-client) - BASE_NAME=$1 - shift - PKG_DIR=$1 - shift - - if [[ -n "$ONLY_BUILD" ]] && [[ "python-$BASE_NAME" != "$ONLY_BUILD" ]]; then - return 0 - fi - - if [[ "$ARVADOS_BUILDING_ITERATION" == "" ]]; then - ARVADOS_BUILDING_ITERATION=1 - fi - - if [[ -z "$ARVADOS_BUILDING_VERSION" ]]; then - cd $WORKSPACE/$PKG_DIR - pwd - rm -rf dist/* - - # Get the latest setuptools - if ! pip3 install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U 'setuptools<45'; then - echo "Error, unable to upgrade setuptools with XY" - echo " pip3 install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U 'setuptools<45'" - exit 1 - fi - # filter a useless warning (when building the cwltest package) from the stderr output - if ! python3 setup.py $DASHQ_UNLESS_DEBUG sdist 2> >(grep -v 'warning: no previously-included files matching'); then - echo "Error, unable to run python3 setup.py sdist for $PKG" - exit 1 - fi - - PYTHON_VERSION=$(awk '($1 == "Version:"){print $2}' *.egg-info/PKG-INFO) - UNFILTERED_PYTHON_VERSION=$(echo -n $PYTHON_VERSION | sed s/\.dev/~dev/g |sed 's/\([0-9]\)rc/\1~rc/g') - - else - UNFILTERED_PYTHON_VERSION=$ARVADOS_BUILDING_VERSION - PYTHON_VERSION=$(echo -n $ARVADOS_BUILDING_VERSION | sed s/~dev/.dev/g | sed s/~rc/rc/g) - fi - - cd - >$STDOUT_IF_DEBUG - if [[ -d "$BASE_NAME" ]]; then - rm -rf $BASE_NAME - fi - mkdir $BASE_NAME - cd $BASE_NAME - - if [[ "$FORMAT" == "deb" ]]; then - cat >ns-control < -Depends: python3-${BASE_NAME} -Description: metapackage to ease the upgrade to the Pyhon 3 version of ${BASE_NAME} - This package is a metapackage that will automatically install the new version of - ${BASE_NAME} which is Python 3 based and has a different name. -EOF - - /usr/bin/equivs-build ns-control - if [[ $? -ne 0 ]]; then - echo "Error running 'equivs-build ns-control', is the 'equivs' package installed?" - return 1 - fi - elif [[ "$FORMAT" == "rpm" ]]; then - cat >meta.spec < -- initial release -EOF - - /usr/bin/rpmbuild -ba meta.spec - if [[ $? -ne 0 ]]; then - echo "Error running 'rpmbuild -ba meta.spec', is the 'rpm-build' package installed?" - return 1 - else - mv /root/rpmbuild/RPMS/x86_64/python-${BASE_NAME}*.${FORMAT} . - if [[ $? -ne 0 ]]; then - echo "Error finding rpm file output of 'rpmbuild -ba meta.spec'" - return 1 - fi - fi - else - echo "Unknown format" - return 1 - fi - - if [[ $EXITCODE -ne 0 ]]; then - return 1 - else - echo `ls *$FORMAT` - mv *$FORMAT $WORKSPACE/packages/$TARGET/ - fi - - # clean up - cd - >$STDOUT_IF_DEBUG - if [[ -d "$BASE_NAME" ]]; then - rm -rf $BASE_NAME - fi -} - # Build packages for everything -fpm_build () { +fpm_build() { # Source dir where fpm-info.sh (if any) will be found. SRC_DIR=$1 shift @@ -1186,6 +1028,8 @@ fpm_build () { FPM_RESULTS=$("${COMMAND_ARR[@]}") FPM_EXIT_CODE=$? + echo "fpm: exit code $FPM_EXIT_CODE" >>$STDOUT_IF_DEBUG + echo "$FPM_RESULTS" >>$STDOUT_IF_DEBUG fpm_verify $FPM_EXIT_CODE $FPM_RESULTS @@ -1202,7 +1046,7 @@ fpm_verify () { FPM_RESULTS=$@ FPM_PACKAGE_NAME='' - if [[ $FPM_RESULTS =~ ([A-Za-z0-9_\.-]*\.)(deb|rpm) ]]; then + if [[ $FPM_RESULTS =~ ([A-Za-z0-9_\.~-]*\.)(deb|rpm) ]]; then FPM_PACKAGE_NAME=${BASH_REMATCH[1]}${BASH_REMATCH[2]} fi