X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/7334ee9ee6350f2b5f0384d8166e7c4f58d86864..26096146e35e14aa334fd31753138935d36caf58:/sdk/cwl/arvados_cwl/arvdocker.py diff --git a/sdk/cwl/arvados_cwl/arvdocker.py b/sdk/cwl/arvados_cwl/arvdocker.py index 04e2a4cffc..cf0b3b9daf 100644 --- a/sdk/cwl/arvados_cwl/arvdocker.py +++ b/sdk/cwl/arvados_cwl/arvdocker.py @@ -57,7 +57,7 @@ def determine_image_id(dockerImageId): def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid, - force_pull, tmp_outdir_prefix, match_local_docker): + force_pull, tmp_outdir_prefix, match_local_docker, copy_deps): """Check if a Docker image is available in Keep, if not, upload it using arv-keepdocker.""" if "http://arvados.org/cwl#dockerCollectionPDH" in dockerRequirement: @@ -80,11 +80,21 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid image_name = sp[0] image_tag = sp[1] if len(sp) > 1 else "latest" - images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3, + out_of_project_images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3, image_name=image_name, - image_tag=image_tag) + image_tag=image_tag, + project_uuid=None) - if images and match_local_docker: + if copy_deps: + # Only images that are available in the destination project + images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3, + image_name=image_name, + image_tag=image_tag, + project_uuid=project_uuid) + else: + images = out_of_project_images + + if match_local_docker: local_image_id = determine_image_id(dockerRequirement["dockerImageId"]) if local_image_id: # find it in the list @@ -98,15 +108,25 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid # force re-upload. images = [] + for i in out_of_project_images: + if i[1]["dockerhash"] == local_image_id: + found = True + out_of_project_images = [i] + break + if not found: + # force re-upload. + out_of_project_images = [] + if not images: - # Fetch Docker image if necessary. - try: - result = cwltool.docker.DockerCommandLineJob.get_image(dockerRequirement, pull_image, - force_pull, tmp_outdir_prefix) - if not result: - raise WorkflowException("Docker image '%s' not available" % dockerRequirement["dockerImageId"]) - except OSError as e: - raise WorkflowException("While trying to get Docker image '%s', failed to execute 'docker': %s" % (dockerRequirement["dockerImageId"], e)) + if not out_of_project_images: + # Fetch Docker image if necessary. + try: + result = cwltool.docker.DockerCommandLineJob.get_image(dockerRequirement, pull_image, + force_pull, tmp_outdir_prefix) + if not result: + raise WorkflowException("Docker image '%s' not available" % dockerRequirement["dockerImageId"]) + except OSError as e: + raise WorkflowException("While trying to get Docker image '%s', failed to execute 'docker': %s" % (dockerRequirement["dockerImageId"], e)) # Upload image to Arvados args = [] @@ -125,7 +145,8 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3, image_name=image_name, - image_tag=image_tag) + image_tag=image_tag, + project_uuid=project_uuid) if not images: raise WorkflowException("Could not find Docker image %s:%s" % (image_name, image_tag))