X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/6d2128ae15825ef03472897e09710b176e3cc1d9..facbf48de90f600a42363b72bcb2b4929f78c73d:/doc/_config.yml

diff --git a/doc/_config.yml b/doc/_config.yml
index fc26cc90fc..e110abeb0e 100644
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -4,7 +4,7 @@
 # workbench, use /doc here and add a symlink at
 # apps/workbench/public/doc pointing to ../../../doc/.site
 # You can also set these on the command line:
-# $ rake generate baseurl=/example arvados_api_host=example.comA
+# $ rake generate baseurl=/example arvados_api_host=example.com
 
 baseurl:
 arvados_api_host: localhost
@@ -13,33 +13,48 @@ arvados_workbench_host: localhost
 exclude: ["Rakefile", "tmp", "vendor"]
 
 navbar:
+  start:
+    - Getting Started:
+      - start/index.html.textile.liquid
+    - Quickstart:
+      - start/getting_started/firstpipeline.html.textile.liquid
+    - Common Use Cases:
+      - start/getting_started/sharedata.html.textile.liquid
+
   userguide:
     - Getting Started:
       - user/index.html.textile.liquid
+      - user/getting_started/community.html.textile.liquid
+    - Run a pipeline using Workbench:
       - user/getting_started/workbench.html.textile.liquid
-      - user/getting_started/ssh-access.html.textile.liquid
+      - user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
+    - Access an Arvados virtual machine:
+      - user/getting_started/ssh-access-unix.html.textile.liquid
+      - user/getting_started/ssh-access-windows.html.textile.liquid
       - user/getting_started/check-environment.html.textile.liquid
-      - user/getting_started/community.html.textile.liquid
-    - Tutorials:
+      - user/reference/api-tokens.html.textile.liquid
+    - Working with data sets:
       - user/tutorials/tutorial-keep.html.textile.liquid
+      - user/tutorials/tutorial-keep-get.html.textile.liquid
+      - user/tutorials/tutorial-keep-mount.html.textile.liquid
+      - user/topics/keep.html.textile.liquid
+    - Run a pipeline on the command line:
+      - user/topics/running-pipeline-command-line.html.textile.liquid
+      - user/topics/arv-run.html.textile.liquid
+    - Develop a new pipeline:
       - user/tutorials/intro-crunch.html.textile.liquid
-      - user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
-      - user/tutorials/tutorial-firstscript.html.textile.liquid
-      - user/tutorials/tutorial-new-pipeline.html.textile.liquid
       - user/tutorials/running-external-program.html.textile.liquid
-    - Intermediate topics:
-      - user/topics/running-pipeline-command-line.html.textile.liquid
-      - user/topics/tutorial-job1.html.textile.liquid
-      - user/topics/tutorial-job-debug.html.textile.liquid
+      - user/topics/crunch-tools-overview.html.textile.liquid
+      - user/tutorials/tutorial-firstscript.html.textile.liquid
+      - user/tutorials/tutorial-submit-job.html.textile.liquid
       - user/topics/tutorial-parallel.html.textile.liquid
-      - user/topics/tutorial-trait-search.html.textile.liquid
-      - user/topics/tutorial-gatk-variantfiltration.html.textile.liquid
-      - user/topics/keep.html.textile.liquid
-    - Examples:
-      - user/examples/crunch-examples.html.textile.liquid
+      - user/topics/arv-docker.html.textile.liquid
     - Reference:
-      - user/reference/api-tokens.html.textile.liquid
-      - user/reference/sdk-cli.html.textile.liquid
+      - user/topics/run-command.html.textile.liquid
+      - user/reference/job-pipeline-ref.html.textile.liquid
+      - user/examples/crunch-examples.html.textile.liquid
+    - Query the metadata database:
+      - user/topics/tutorial-trait-search.html.textile.liquid
     - Arvados License:
       - user/copying/copying.html.textile.liquid
       - user/copying/agpl-3.0.html
@@ -56,8 +71,15 @@ navbar:
       - sdk/perl/index.html.textile.liquid
     - Ruby:
       - sdk/ruby/index.html.textile.liquid
+    - Java:
+      - sdk/java/index.html.textile.liquid
+    - Go:
+      - sdk/go/index.html.textile.liquid
     - CLI:
       - sdk/cli/index.html.textile.liquid
+      - sdk/cli/install.html.textile.liquid
+      - sdk/cli/reference.html.textile.liquid
+      - sdk/cli/subcommands.html.textile.liquid
   api:
     - Concepts:
       - api/index.html.textile.liquid
@@ -76,6 +98,7 @@ navbar:
       - api/methods/jobs.html.textile.liquid
       - api/methods/job_tasks.html.textile.liquid
       - api/methods/keep_disks.html.textile.liquid
+      - api/methods/keep_services.html.textile.liquid
       - api/methods/links.html.textile.liquid
       - api/methods/logs.html.textile.liquid
       - api/methods/nodes.html.textile.liquid
@@ -96,6 +119,7 @@ navbar:
       - api/schema/Job.html.textile.liquid
       - api/schema/JobTask.html.textile.liquid
       - api/schema/KeepDisk.html.textile.liquid
+      - api/schema/KeepService.html.textile.liquid
       - api/schema/Link.html.textile.liquid
       - api/schema/Log.html.textile.liquid
       - api/schema/Node.html.textile.liquid
@@ -111,11 +135,21 @@ navbar:
       - admin/index.html.md.liquid
       - admin/cheat_sheet.html.textile.liquid
   installguide:
-    - Install:
-      - install/index.html.md.liquid
-      - install/install-sso.html.textile.liquid
+    - Overview:
+      - install/index.html.textile.liquid
+    - Docker:
+      - install/install-docker.html.textile.liquid
+    - Manual installation:
+      - install/install-manual-overview.html.textile.liquid
+      - install/install-manual-prerequisites.html.textile.liquid
       - install/install-api-server.html.textile.liquid
       - install/install-workbench-app.html.textile.liquid
-      - install/client.html.textile.liquid
+      - install/install-shell-server.html.textile.liquid
       - install/create-standard-objects.html.textile.liquid
+      - install/install-keepstore.html.textile.liquid
+      - install/install-keepproxy.html.textile.liquid
       - install/install-crunch-dispatch.html.textile.liquid
+      - install/install-compute-node.html.textile.liquid
+    - Software prerequisites:
+      - install/install-manual-prerequisites-ruby.html.textile.liquid
+      - install/install-sso.html.textile.liquid