~$ sudo apt-get install libcurl3 libcurl3-gnutls libcurl4-openssl-dev \
- libxslt1.1 zlib1g-dev gettext bison libssl-dev libreadline-dev \
- libpq-dev sqlite3 libsqlite3-dev build-essential wget postgresql sudo
-mkdir -p ~/src
-cd ~/src
-wget http://cache.ruby-lang.org/pub/ruby/2.1/ruby-2.1.1.tar.gz
-tar xzf ruby-2.1.1.tar.gz
-cd ruby-2.1.1
-./configure
-make
-sudo make install
+~$ sudo apt-get install bison build-essential libcurl4-openssl-dev git arvados-api-server
+
+~$ sudo yum install bison make automake gcc gcc-c++ libcurl-devel git arvados-api-server
+~$ ruby -e 'puts rand(2**128).to_s(36)'
+6gqa1vu492idd7yca9tfandj3
~$ cd $HOME # (or wherever you want to install)
-~$ git clone https://github.com/curoverse/arvados.git
+~$ sudo -u postgres createuser --encrypted -R -S --pwprompt arvados
+[sudo] password for you: yourpassword
+Enter password for new role: paste-password-you-generated
+Enter it again: paste-password-again
~$ cd arvados/services/api
-~/arvados/services/api$ bundle install
-~$ sudo -u postgres createdb arvados_production -T template0 -E UTF8 -O arvados
+~/arvados/services/api$ cp -i config/application.yml.example config/application.yml
-~$ sudo mkdir -p /etc/arvados/api
+~$ sudo chmod 700 /etc/arvados/api
+~$ cd /var/www/arvados-api/current
+/var/www/arvados-api/current$ sudo cp config/database.yml.example /etc/arvados/api/database.yml
+/var/www/arvados-api/current$ sudo cp config/application.yml.example /etc/arvados/api/application.yml
+~/arvados/services/api$ sudo mkdir -p /var/cache/git
-~/arvados/services/api$ sudo git clone --bare ../../.git /var/cache/git/arvados.git
- uuid_prefix: zzzzz~/arvados/services/api$ rake secret
-zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz
+~$ ruby -e 'puts rand(2**400).to_s(36)'
+yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy
secret_token: zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz
- secret_token: yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy~/arvados/services/api$ ruby -e 'puts rand(2**128).to_s(36)'
-6gqa1vu492idd7yca9tfandj3
+~$ ruby -e 'puts rand(2**400).to_s(36)'
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
~/arvados/services/api$ sudo -u postgres createuser --createdb --encrypted --pwprompt arvados
-[sudo] password for you: yourpassword
-Enter password for new role: paste-password-you-generated
-Enter it again: paste-password-again
-Shall the new role be a superuser? (y/n) n
-Shall the new role be allowed to create more new roles? (y/n) n
- blob_signing_key: xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx~/arvados/services/api$ cp -i config/database.yml.sample config/database.yml
-~/arvados/services/api$ edit config/database.yml
- sso_app_id: arvados-server
+ sso_app_secret: wwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwwww
+ sso_provider_url: https://sso.example.com
+~/arvados/services/api$ RAILS_ENV=development bundle exec rake db:setup
- workbench_address: https://workbench.zzzzz.example.com~/arvados/services/api$ cp -i config/initializers/omniauth.rb.example config/initializers/omniauth.rb
- websocket_address: wss://ws.zzzzz.example.com/websocket~/arvados/services/api$ bundle exec rails server --port=3030
+~$ sudo mkdir -p /var/lib/arvados/git/repositories
PassengerBufferResponse off
+ git_repositories_dir: /var/lib/arvados/git/repositories
https://localhost:3030/login
+ git_internal_dir: /var/lib/arvados/internal.git
~/arvados/services/api$ bundle exec rails console
-irb(main):001:0> Thread.current[:user] = User.all.select(&:identity_url).last
-irb(main):002:0> Thread.current[:user].is_admin = true
-irb(main):003:0> Thread.current[:user].update_attributes is_admin: true, is_active: true
-irb(main):004:0> User.where(is_admin: true).collect &:email
-=> ["root", "your_address@example.com"]
-Puma is already included with the API server's gems. We recommend you run it as a service under runit or a similar tool. Here's a sample runit script for that:
+ +#!/bin/bash
+
+set -e
+exec 2>&1
+
+# Uncomment the line below if you're using RVM.
+#source /etc/profile.d/rvm.sh
+
+envdir="`pwd`/env"
+mkdir -p "$envdir"
+echo ws-only > "$envdir/ARVADOS_WEBSOCKETS"
+
+cd /var/www/arvados-api/current
+echo "Starting puma in `pwd`"
+
+# Change arguments below to match your deployment, "webserver-user" and
+# "webserver-group" should be changed to the user and group of the web server
+# process. This is typically "www-data:www-data" on Debian systems by default,
+# other systems may use different defaults such the name of the web server
+# software (for example, "nginx:nginx").
+exec chpst -m 1073741824 -u webserver-user:webserver-group -e "$envdir" \
+ bundle exec puma -t 0:512 -e production -b tcp://127.0.0.1:8100
+Edit the http section of your Nginx configuration to run the Passenger server, and act as a front-end for both it and Puma. You might add a block like the following, adding SSL and logging parameters to taste:
+ +server {
+ listen 127.0.0.1:8000;
+ server_name localhost-api;
+
+ root /var/www/arvados-api/current/public;
+ index index.html index.htm index.php;
+
+ passenger_enabled on;
+ # If you're using RVM, uncomment the line below.
+ #passenger_ruby /usr/local/rvm/wrappers/default/ruby;
+}
+
+upstream api {
+ server 127.0.0.1:8000 fail_timeout=10s;
+}
+
+upstream websockets {
+ # The address below must match the one specified in puma's -b option.
+ server 127.0.0.1:8100 fail_timeout=10s;
+}
+
+proxy_http_version 1.1;
+
+# When Keep clients request a list of Keep services from the API server, the
+# server will automatically return the list of available proxies if
+# the request headers include X-External-Client: 1. Following the example
+# here, at the end of this section, add a line for each netmask that has
+# direct access to Keep storage daemons to set this header value to 0.
+geo $external_client {
+ default 1;
+ 10.20.30.0/24 0;
+}
+
+server {
+ listen [your public IP address]:443 ssl;
+ server_name uuid_prefix.your.domain;
+
+ ssl on;
+ ssl_certificate /YOUR/PATH/TO/cert.pem;
+ ssl_certificate_key /YOUR/PATH/TO/cert.key;
+
+ index index.html index.htm index.php;
+
+ # This value effectively limits the size of API objects users can create,
+ # especially collections. If you change this, you should also set
+ # `max_request_size` in the API server's application.yml file to the same
+ # value.
+ client_max_body_size 128m;
+
+ location / {
+ proxy_pass http://api;
+ proxy_redirect off;
+ proxy_connect_timeout 90s;
+ proxy_read_timeout 300s;
+
+ proxy_set_header X-Forwarded-Proto https;
+ proxy_set_header Host $http_host;
+ proxy_set_header X-External-Client $external_client;
+ proxy_set_header X-Real-IP $remote_addr;
+ proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+ }
+}
+
+server {
+ listen [your public IP address]:443 ssl;
+ server_name ws.uuid_prefix.your.domain;
+
+ ssl on;
+ ssl_certificate /YOUR/PATH/TO/cert.pem;
+ ssl_certificate_key /YOUR/PATH/TO/cert.key;
+
+ index index.html index.htm index.php;
+
+ location / {
+ proxy_pass http://websockets;
+ proxy_redirect off;
+ proxy_connect_timeout 90s;
+ proxy_read_timeout 300s;
+
+ proxy_set_header Upgrade $http_upgrade;
+ proxy_set_header Connection "upgrade";
+ proxy_set_header Host $host;
+ proxy_set_header X-Real-IP $remote_addr;
+ proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+ }
+}
+Restart Nginx:
+ +~$ sudo nginx -s reload
+Don't run Bundler as root. Bundler can ask for sudo if it is needed, and installing your bundle as root will +break this application for all non-root users on this machine.+
fatal: Not a git repository (or any of the parent directories): .git+{% include 'notebox_end' %} + +This command aborts when it encounters an error. It's safe to rerun multiple times, so if there's a problem with your configuration, you can fix that and try again. +