X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/6470f7ce527c2cc44e25de402bd0418c821d13a8..a47700e6e8e87ab3696949b768f4c125a9241300:/sdk/cwl/arvados_cwl/executor.py?ds=sidebyside diff --git a/sdk/cwl/arvados_cwl/executor.py b/sdk/cwl/arvados_cwl/executor.py index f60c480873..edb9d5b523 100644 --- a/sdk/cwl/arvados_cwl/executor.py +++ b/sdk/cwl/arvados_cwl/executor.py @@ -42,7 +42,7 @@ from .context import ArvLoadingContext, ArvRuntimeContext from ._version import __version__ from cwltool.process import shortname, UnsupportedRequirement, use_custom_schema -from cwltool.utils import adjustFileObjs, adjustDirObjs, get_listing, visit_class +from cwltool.utils import adjustFileObjs, adjustDirObjs, get_listing, visit_class, aslist from cwltool.command_line_tool import compute_checksums from cwltool.load_tool import load_tool @@ -549,6 +549,12 @@ The 'jobs' API is no longer supported. if runtimeContext.submit_request_uuid and self.work_api != "containers": raise Exception("--submit-request-uuid requires containers API, but using '{}' api".format(self.work_api)) + default_storage_classes = ",".join([k for k,v in self.api.config()["StorageClasses"].items() if v.get("Default") is True]) + if runtimeContext.storage_classes == "default": + runtimeContext.storage_classes = default_storage_classes + if runtimeContext.intermediate_storage_classes == "default": + runtimeContext.intermediate_storage_classes = default_storage_classes + if not runtimeContext.name: runtimeContext.name = self.name = updated_tool.tool.get("label") or updated_tool.metadata.get("label") or os.path.basename(updated_tool.tool["id"]) @@ -771,7 +777,13 @@ The 'jobs' API is no longer supported. if self.output_tags is None: self.output_tags = "" - storage_classes = runtimeContext.storage_classes.strip().split(",") + storage_classes = "" + storage_class_req, _ = tool.get_requirement("http://arvados.org/cwl#OutputStorageClass") + if storage_class_req and storage_class_req.get("finalStorageClass"): + storage_classes = aslist(storage_class_req["finalStorageClass"]) + else: + storage_classes = runtimeContext.storage_classes.strip().split(",") + self.final_output, self.final_output_collection = self.make_output_collection(self.output_name, storage_classes, self.output_tags, self.final_output) self.set_crunch_output()