X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/622a60e878900b94d71555d72bced70660f065bf..56b6ea6226bff623e2fcd277733cceb219ea5b5c:/doc/user/topics/arv-run.html.textile.liquid diff --git a/doc/user/topics/arv-run.html.textile.liquid b/doc/user/topics/arv-run.html.textile.liquid index 9eabfacf70..9752ca7d2b 100644 --- a/doc/user/topics/arv-run.html.textile.liquid +++ b/doc/user/topics/arv-run.html.textile.liquid @@ -3,6 +3,15 @@ layout: default navsection: userguide title: "Using arv-run" ... +{% comment %} +Copyright (C) The Arvados Authors. All rights reserved. + +SPDX-License-Identifier: CC-BY-SA-3.0 +{% endcomment %} + +{% include 'crunch1only_begin' %} +On those sites, the features described here are not yet implemented. +{% include 'crunch1only_end' %} The @arv-run@ command enables you create Arvados pipelines at the command line that fan out to multiple concurrent tasks across Arvados compute nodes. @@ -134,10 +143,10 @@ Running pipeline qr1hi-d1hrv-slcnhq5czo764b1 h2. Additional options -* @--docker-image IMG@ : By default, commands run inside a Docker container created from the latest "arvados/jobs" Docker image. Use this option to specify a different image to use. Note: the Docker image must be uploaded to Arvados using @arv keep docker@. +* @--docker-image IMG@ : By default, commands run based in a container created from the @default_docker_image_for_jobs@ setting on the API server. Use this option to specify a different image to use. Note: the Docker image must be uploaded to Arvados using @arv keep docker@. * @--dry-run@ : Print out the final Arvados pipeline generated by @arv-run@ without submitting it. * @--local@ : By default, the pipeline will be submitted to your configured Arvados instance. Use this option to run the command locally using @arv-run-pipeline-instance --run-jobs-here@. -* @--ignore-rcode@ : Some commands use non-zero exit codes to indicate nonfatal conditions (e.g. @grep@ returns 1 when no match is found). Set this to indicate that commands that return non-zero return codes should not be considered failed. +* @--ignore-rcode@ : Some commands use non-zero exit codes to indicate nonfatal conditions (e.g., @grep@ returns 1 when no match is found). Set this to indicate that commands that return non-zero return codes should not be considered failed. * @--no-wait@ : Do not wait and display logs after submitting command, just exit. h2. Putting it all together: bwa mem