X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/5bcba288077488791daa43a15d5fd5fb0c6e653c..5b3187552676947ee74e4b652e7a04d3d9b9a3a4:/doc/user/tutorials/tutorial-firstscript.html.textile.liquid diff --git a/doc/user/tutorials/tutorial-firstscript.html.textile.liquid b/doc/user/tutorials/tutorial-firstscript.html.textile.liquid index 6fe88fe156..adf4da1371 100644 --- a/doc/user/tutorials/tutorial-firstscript.html.textile.liquid +++ b/doc/user/tutorials/tutorial-firstscript.html.textile.liquid @@ -82,23 +82,23 @@ You can now run your script on your local workstation or VM using @arv-crunch-jo 2014-08-06_15:16:35 qr1hi-8i9sb-qyrat80ef927lam 14473 release job allocation 2014-08-06_15:16:35 qr1hi-8i9sb-qyrat80ef927lam 14473 Freeze not implemented 2014-08-06_15:16:35 qr1hi-8i9sb-qyrat80ef927lam 14473 collate -2014-08-06_15:16:36 qr1hi-8i9sb-qyrat80ef927lam 14473 output uuid qr1hi-4zz18-n91qrqfp3zivexo +2014-08-06_15:16:36 qr1hi-8i9sb-qyrat80ef927lam 14473 collated output manifest text to send to API server is 105 bytes with access tokens 2014-08-06_15:16:36 qr1hi-8i9sb-qyrat80ef927lam 14473 output hash c1b44b6dc41ef334cf1136033ca950e6+54 2014-08-06_15:16:37 qr1hi-8i9sb-qyrat80ef927lam 14473 finish 2014-08-06_15:16:38 qr1hi-8i9sb-qyrat80ef927lam 14473 log manifest is 7fe8cf1d45d438a3ca3ac4a184b7aff4+83 -Although the job runs locally, the output of the job has been saved to Keep, the Arvados file store. The "output uuid" line (fourth from the bottom) provides the UUID of the Arvados collection where the script's output has been saved. Copy the output identifier and use @arv-ls@ to list the contents of your output collection, and @arv-get@ to download it to the current directory: +Although the job runs locally, the output of the job has been saved to Keep, the Arvados file store. The "output hash" line (third from the bottom) provides the portable data hash of the Arvados collection where the script's output has been saved. Copy the output hash and use @arv-ls@ to list the contents of your output collection, and @arv-get@ to download it to the current directory: -
~/tutorial/crunch_scripts$ arv-ls qr1hi-4zz18-n91qrqfp3zivexo
+
~/tutorial/crunch_scripts$ arv-ls c1b44b6dc41ef334cf1136033ca950e6+54
 ./md5sum.txt
-~/tutorial/crunch_scripts$ arv-get qr1hi-4zz18-n91qrqfp3zivexo/ .
+~/tutorial/crunch_scripts$ arv-get c1b44b6dc41ef334cf1136033ca950e6+54/ .
 0 MiB / 0 MiB 100.0%
 ~/tutorial/crunch_scripts$ cat md5sum.txt
 44b8ae3fde7a8a88d2f7ebd237625b4f c1bad4b39ca5a924e481008009d94e32+210/var-GS000016015-ASM.tsv.bz2
 
-Running locally is convenient for development and debugging, as it permits a fast iterative development cycle. Your job run is also recorded by Arvados, and will appear in the *Recent jobs and pipelines* panel on the "Workbench Dashboard":https://{{site.arvados_workbench_host}}. This provides limited provenance, by recording the input parameters, the execution log, and the output. However, running locally does not allow you to scale out to multiple nodes, and does not store the complete system snapshot required to achieve reproducibility; to do that you need to "submit a job to the Arvados cluster":{{site.baseurl}}/user/tutorials/tutorial-submit-job.html. +Running locally is convenient for development and debugging, as it permits a fast iterative development cycle. Your job run is also recorded by Arvados, and will appear in the *Recent jobs and pipelines* panel on the "Workbench Dashboard":{{site.arvados_workbench_host}}. This provides limited provenance, by recording the input parameters, the execution log, and the output. However, running locally does not allow you to scale out to multiple nodes, and does not store the complete system snapshot required to achieve reproducibility; to do that you need to "submit a job to the Arvados cluster":{{site.baseurl}}/user/tutorials/tutorial-submit-job.html.