X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/53ce9b61336c5385eb2250267efa69613b5eaec7..ca6c0353c236d5fc0f829880e845cbd8489ea9ad:/sdk/R/R/Arvados.R diff --git a/sdk/R/R/Arvados.R b/sdk/R/R/Arvados.R index c69fe08490..52d6c95f5e 100644 --- a/sdk/R/R/Arvados.R +++ b/sdk/R/R/Arvados.R @@ -1,179 +1,101 @@ -#' users.get is a method defined in Arvados class. -#' -#' @usage arv$users.get(uuid) -#' @param uuid The UUID of the User in question. -#' @return User object. -#' @name users.get -NULL +# Copyright (C) The Arvados Authors. All rights reserved. +# +# SPDX-License-Identifier: Apache-2.0 -#' users.index is a method defined in Arvados class. -#' -#' @usage arv$users.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return UserList object. -#' @name users.index +#' api_clients.get +#' +#' api_clients.get is a method defined in Arvados class. +#' +#' @usage arv$api_clients.get(uuid) +#' @param uuid The UUID of the ApiClient in question. +#' @return ApiClient object. +#' @name api_clients.get NULL -#' users.create is a method defined in Arvados class. -#' -#' @usage arv$users.create(user, ensure_unique_name = "false") -#' @param user User object. +#' api_clients.create +#' +#' api_clients.create is a method defined in Arvados class. +#' +#' @usage arv$api_clients.create(apiclient, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param apiClient ApiClient object. #' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return User object. -#' @name users.create -NULL - -#' users.update is a method defined in Arvados class. -#' -#' @usage arv$users.update(user, uuid) -#' @param user User object. -#' @param uuid The UUID of the User in question. -#' @return User object. -#' @name users.update -NULL - -#' users.delete is a method defined in Arvados class. -#' -#' @usage arv$users.delete(uuid) -#' @param uuid The UUID of the User in question. -#' @return User object. -#' @name users.delete -NULL - -#' users.current is a method defined in Arvados class. -#' -#' @usage arv$users.current(NULL) -#' @return User object. -#' @name users.current -NULL - -#' users.system is a method defined in Arvados class. -#' -#' @usage arv$users.system(NULL) -#' @return User object. -#' @name users.system -NULL - -#' users.activate is a method defined in Arvados class. -#' -#' @usage arv$users.activate(uuid) -#' @param uuid -#' @return User object. -#' @name users.activate -NULL - -#' users.setup is a method defined in Arvados class. -#' -#' @usage arv$users.setup(user = NULL, openid_prefix = NULL, -#' repo_name = NULL, vm_uuid = NULL, send_notification_email = "false") -#' @param user -#' @param openid_prefix -#' @param repo_name -#' @param vm_uuid -#' @param send_notification_email -#' @return User object. -#' @name users.setup +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return ApiClient object. +#' @name api_clients.create NULL -#' users.unsetup is a method defined in Arvados class. -#' -#' @usage arv$users.unsetup(uuid) -#' @param uuid -#' @return User object. -#' @name users.unsetup +#' api_clients.update +#' +#' api_clients.update is a method defined in Arvados class. +#' +#' @usage arv$api_clients.update(apiclient, +#' uuid) +#' @param apiClient ApiClient object. +#' @param uuid The UUID of the ApiClient in question. +#' @return ApiClient object. +#' @name api_clients.update NULL -#' users.update_uuid is a method defined in Arvados class. -#' -#' @usage arv$users.update_uuid(uuid, new_uuid) -#' @param uuid -#' @param new_uuid -#' @return User object. -#' @name users.update_uuid +#' api_clients.delete +#' +#' api_clients.delete is a method defined in Arvados class. +#' +#' @usage arv$api_clients.delete(uuid) +#' @param uuid The UUID of the ApiClient in question. +#' @return ApiClient object. +#' @name api_clients.delete NULL -#' users.list is a method defined in Arvados class. -#' -#' @usage arv$users.list(filters = NULL, +#' api_clients.list +#' +#' api_clients.list is a method defined in Arvados class. +#' +#' @usage arv$api_clients.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return UserList object. -#' @name users.list -NULL - -#' users.show is a method defined in Arvados class. -#' -#' @usage arv$users.show(uuid) -#' @param uuid -#' @return User object. -#' @name users.show -NULL - -#' users.destroy is a method defined in Arvados class. -#' -#' @usage arv$users.destroy(uuid) -#' @param uuid -#' @return User object. -#' @name users.destroy +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return ApiClientList object. +#' @name api_clients.list NULL +#' api_client_authorizations.get +#' #' api_client_authorizations.get is a method defined in Arvados class. -#' +#' #' @usage arv$api_client_authorizations.get(uuid) #' @param uuid The UUID of the ApiClientAuthorization in question. #' @return ApiClientAuthorization object. #' @name api_client_authorizations.get NULL -#' api_client_authorizations.index is a method defined in Arvados class. -#' -#' @usage arv$api_client_authorizations.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return ApiClientAuthorizationList object. -#' @name api_client_authorizations.index -NULL - +#' api_client_authorizations.create +#' #' api_client_authorizations.create is a method defined in Arvados class. -#' +#' #' @usage arv$api_client_authorizations.create(apiclientauthorization, -#' ensure_unique_name = "false") +#' ensure_unique_name = "false", cluster_id = NULL) #' @param apiClientAuthorization ApiClientAuthorization object. #' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. #' @return ApiClientAuthorization object. #' @name api_client_authorizations.create NULL +#' api_client_authorizations.update +#' #' api_client_authorizations.update is a method defined in Arvados class. -#' +#' #' @usage arv$api_client_authorizations.update(apiclientauthorization, #' uuid) #' @param apiClientAuthorization ApiClientAuthorization object. @@ -182,103 +104,263 @@ NULL #' @name api_client_authorizations.update NULL +#' api_client_authorizations.delete +#' #' api_client_authorizations.delete is a method defined in Arvados class. -#' +#' #' @usage arv$api_client_authorizations.delete(uuid) #' @param uuid The UUID of the ApiClientAuthorization in question. #' @return ApiClientAuthorization object. #' @name api_client_authorizations.delete NULL +#' api_client_authorizations.create_system_auth +#' #' api_client_authorizations.create_system_auth is a method defined in Arvados class. -#' +#' #' @usage arv$api_client_authorizations.create_system_auth(api_client_id = NULL, #' scopes = NULL) -#' @param api_client_id -#' @param scopes +#' @param api_client_id +#' @param scopes #' @return ApiClientAuthorization object. #' @name api_client_authorizations.create_system_auth NULL +#' api_client_authorizations.current +#' #' api_client_authorizations.current is a method defined in Arvados class. -#' +#' #' @usage arv$api_client_authorizations.current(NULL) #' @return ApiClientAuthorization object. #' @name api_client_authorizations.current NULL +#' api_client_authorizations.list +#' #' api_client_authorizations.list is a method defined in Arvados class. -#' +#' #' @usage arv$api_client_authorizations.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only #' @return ApiClientAuthorizationList object. #' @name api_client_authorizations.list NULL -#' api_client_authorizations.show is a method defined in Arvados class. -#' -#' @usage arv$api_client_authorizations.show(uuid) -#' @param uuid -#' @return ApiClientAuthorization object. -#' @name api_client_authorizations.show +#' authorized_keys.get +#' +#' authorized_keys.get is a method defined in Arvados class. +#' +#' @usage arv$authorized_keys.get(uuid) +#' @param uuid The UUID of the AuthorizedKey in question. +#' @return AuthorizedKey object. +#' @name authorized_keys.get NULL -#' api_client_authorizations.destroy is a method defined in Arvados class. -#' -#' @usage arv$api_client_authorizations.destroy(uuid) -#' @param uuid -#' @return ApiClientAuthorization object. -#' @name api_client_authorizations.destroy +#' authorized_keys.create +#' +#' authorized_keys.create is a method defined in Arvados class. +#' +#' @usage arv$authorized_keys.create(authorizedkey, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param authorizedKey AuthorizedKey object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return AuthorizedKey object. +#' @name authorized_keys.create +NULL + +#' authorized_keys.update +#' +#' authorized_keys.update is a method defined in Arvados class. +#' +#' @usage arv$authorized_keys.update(authorizedkey, +#' uuid) +#' @param authorizedKey AuthorizedKey object. +#' @param uuid The UUID of the AuthorizedKey in question. +#' @return AuthorizedKey object. +#' @name authorized_keys.update +NULL + +#' authorized_keys.delete +#' +#' authorized_keys.delete is a method defined in Arvados class. +#' +#' @usage arv$authorized_keys.delete(uuid) +#' @param uuid The UUID of the AuthorizedKey in question. +#' @return AuthorizedKey object. +#' @name authorized_keys.delete +NULL + +#' authorized_keys.list +#' +#' authorized_keys.list is a method defined in Arvados class. +#' +#' @usage arv$authorized_keys.list(filters = NULL, +#' where = NULL, order = NULL, select = NULL, +#' distinct = NULL, limit = "100", offset = "0", +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return AuthorizedKeyList object. +#' @name authorized_keys.list +NULL + +#' collections.get +#' +#' collections.get is a method defined in Arvados class. +#' +#' @usage arv$collections.get(uuid) +#' @param uuid The UUID of the Collection in question. +#' @return Collection object. +#' @name collections.get +NULL + +#' collections.create +#' +#' collections.create is a method defined in Arvados class. +#' +#' @usage arv$collections.create(collection, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param collection Collection object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return Collection object. +#' @name collections.create +NULL + +#' collections.update +#' +#' collections.update is a method defined in Arvados class. +#' +#' @usage arv$collections.update(collection, +#' uuid) +#' @param collection Collection object. +#' @param uuid The UUID of the Collection in question. +#' @return Collection object. +#' @name collections.update +NULL + +#' collections.delete +#' +#' collections.delete is a method defined in Arvados class. +#' +#' @usage arv$collections.delete(uuid) +#' @param uuid The UUID of the Collection in question. +#' @return Collection object. +#' @name collections.delete +NULL + +#' collections.provenance +#' +#' collections.provenance is a method defined in Arvados class. +#' +#' @usage arv$collections.provenance(uuid) +#' @param uuid +#' @return Collection object. +#' @name collections.provenance +NULL + +#' collections.used_by +#' +#' collections.used_by is a method defined in Arvados class. +#' +#' @usage arv$collections.used_by(uuid) +#' @param uuid +#' @return Collection object. +#' @name collections.used_by +NULL + +#' collections.trash +#' +#' collections.trash is a method defined in Arvados class. +#' +#' @usage arv$collections.trash(uuid) +#' @param uuid +#' @return Collection object. +#' @name collections.trash +NULL + +#' collections.untrash +#' +#' collections.untrash is a method defined in Arvados class. +#' +#' @usage arv$collections.untrash(uuid) +#' @param uuid +#' @return Collection object. +#' @name collections.untrash +NULL + +#' collections.list +#' +#' collections.list is a method defined in Arvados class. +#' +#' @usage arv$collections.list(filters = NULL, +#' where = NULL, order = NULL, select = NULL, +#' distinct = NULL, limit = "100", offset = "0", +#' count = "exact", cluster_id = NULL, bypass_federation = NULL, +#' include_trash = NULL, include_old_versions = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @param include_trash Include collections whose is_trashed attribute is true. +#' @param include_old_versions Include past collection versions. +#' @return CollectionList object. +#' @name collections.list NULL +#' containers.get +#' #' containers.get is a method defined in Arvados class. -#' +#' #' @usage arv$containers.get(uuid) #' @param uuid The UUID of the Container in question. #' @return Container object. #' @name containers.get NULL -#' containers.index is a method defined in Arvados class. -#' -#' @usage arv$containers.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return ContainerList object. -#' @name containers.index -NULL - +#' containers.create +#' #' containers.create is a method defined in Arvados class. -#' +#' #' @usage arv$containers.create(container, -#' ensure_unique_name = "false") +#' ensure_unique_name = "false", cluster_id = NULL) #' @param container Container object. #' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. #' @return Container object. #' @name containers.create NULL +#' containers.update +#' #' containers.update is a method defined in Arvados class. -#' +#' #' @usage arv$containers.update(container, #' uuid) #' @param container Container object. @@ -287,7018 +369,3479 @@ NULL #' @name containers.update NULL +#' containers.delete +#' #' containers.delete is a method defined in Arvados class. -#' +#' #' @usage arv$containers.delete(uuid) #' @param uuid The UUID of the Container in question. #' @return Container object. #' @name containers.delete NULL +#' containers.auth +#' #' containers.auth is a method defined in Arvados class. -#' +#' #' @usage arv$containers.auth(uuid) -#' @param uuid +#' @param uuid #' @return Container object. #' @name containers.auth NULL +#' containers.lock +#' #' containers.lock is a method defined in Arvados class. -#' +#' #' @usage arv$containers.lock(uuid) -#' @param uuid +#' @param uuid #' @return Container object. #' @name containers.lock NULL +#' containers.unlock +#' #' containers.unlock is a method defined in Arvados class. -#' +#' #' @usage arv$containers.unlock(uuid) -#' @param uuid +#' @param uuid #' @return Container object. #' @name containers.unlock NULL +#' containers.secret_mounts +#' #' containers.secret_mounts is a method defined in Arvados class. -#' +#' #' @usage arv$containers.secret_mounts(uuid) -#' @param uuid +#' @param uuid #' @return Container object. #' @name containers.secret_mounts NULL +#' containers.current +#' #' containers.current is a method defined in Arvados class. -#' +#' #' @usage arv$containers.current(NULL) #' @return Container object. #' @name containers.current NULL +#' containers.list +#' #' containers.list is a method defined in Arvados class. -#' +#' #' @usage arv$containers.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only #' @return ContainerList object. #' @name containers.list NULL -#' containers.show is a method defined in Arvados class. -#' -#' @usage arv$containers.show(uuid) -#' @param uuid -#' @return Container object. -#' @name containers.show +#' container_requests.get +#' +#' container_requests.get is a method defined in Arvados class. +#' +#' @usage arv$container_requests.get(uuid) +#' @param uuid The UUID of the ContainerRequest in question. +#' @return ContainerRequest object. +#' @name container_requests.get NULL -#' containers.destroy is a method defined in Arvados class. -#' -#' @usage arv$containers.destroy(uuid) -#' @param uuid -#' @return Container object. -#' @name containers.destroy +#' container_requests.create +#' +#' container_requests.create is a method defined in Arvados class. +#' +#' @usage arv$container_requests.create(containerrequest, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param containerRequest ContainerRequest object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return ContainerRequest object. +#' @name container_requests.create NULL -#' api_clients.get is a method defined in Arvados class. -#' -#' @usage arv$api_clients.get(uuid) -#' @param uuid The UUID of the ApiClient in question. -#' @return ApiClient object. -#' @name api_clients.get +#' container_requests.update +#' +#' container_requests.update is a method defined in Arvados class. +#' +#' @usage arv$container_requests.update(containerrequest, +#' uuid) +#' @param containerRequest ContainerRequest object. +#' @param uuid The UUID of the ContainerRequest in question. +#' @return ContainerRequest object. +#' @name container_requests.update +NULL + +#' container_requests.delete +#' +#' container_requests.delete is a method defined in Arvados class. +#' +#' @usage arv$container_requests.delete(uuid) +#' @param uuid The UUID of the ContainerRequest in question. +#' @return ContainerRequest object. +#' @name container_requests.delete NULL -#' api_clients.index is a method defined in Arvados class. -#' -#' @usage arv$api_clients.index(filters = NULL, +#' container_requests.list +#' +#' container_requests.list is a method defined in Arvados class. +#' +#' @usage arv$container_requests.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return ApiClientList object. -#' @name api_clients.index +#' count = "exact", cluster_id = NULL, bypass_federation = NULL, +#' include_trash = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @param include_trash Include container requests whose owner project is trashed. +#' @return ContainerRequestList object. +#' @name container_requests.list NULL -#' api_clients.create is a method defined in Arvados class. -#' -#' @usage arv$api_clients.create(apiclient, -#' ensure_unique_name = "false") -#' @param apiClient ApiClient object. +#' groups.get +#' +#' groups.get is a method defined in Arvados class. +#' +#' @usage arv$groups.get(uuid) +#' @param uuid The UUID of the Group in question. +#' @return Group object. +#' @name groups.get +NULL + +#' groups.create +#' +#' groups.create is a method defined in Arvados class. +#' +#' @usage arv$groups.create(group, ensure_unique_name = "false", +#' cluster_id = NULL, async = "false") +#' @param group Group object. #' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return ApiClient object. -#' @name api_clients.create +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @param async defer permissions update +#' @return Group object. +#' @name groups.create NULL -#' api_clients.update is a method defined in Arvados class. -#' -#' @usage arv$api_clients.update(apiclient, -#' uuid) -#' @param apiClient ApiClient object. -#' @param uuid The UUID of the ApiClient in question. -#' @return ApiClient object. -#' @name api_clients.update +#' groups.update +#' +#' groups.update is a method defined in Arvados class. +#' +#' @usage arv$groups.update(group, uuid, +#' async = "false") +#' @param group Group object. +#' @param uuid The UUID of the Group in question. +#' @param async defer permissions update +#' @return Group object. +#' @name groups.update NULL -#' api_clients.delete is a method defined in Arvados class. -#' -#' @usage arv$api_clients.delete(uuid) -#' @param uuid The UUID of the ApiClient in question. -#' @return ApiClient object. -#' @name api_clients.delete +#' groups.delete +#' +#' groups.delete is a method defined in Arvados class. +#' +#' @usage arv$groups.delete(uuid) +#' @param uuid The UUID of the Group in question. +#' @return Group object. +#' @name groups.delete NULL -#' api_clients.list is a method defined in Arvados class. -#' -#' @usage arv$api_clients.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return ApiClientList object. -#' @name api_clients.list +#' groups.contents +#' +#' groups.contents is a method defined in Arvados class. +#' +#' @usage arv$groups.contents(filters = NULL, +#' where = NULL, order = NULL, distinct = NULL, +#' limit = "100", offset = "0", count = "exact", +#' cluster_id = NULL, bypass_federation = NULL, +#' include_trash = NULL, uuid = NULL, recursive = NULL, +#' include = NULL) +#' @param filters +#' @param where +#' @param order +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @param include_trash Include items whose is_trashed attribute is true. +#' @param uuid +#' @param recursive Include contents from child groups recursively. +#' @param include Include objects referred to by listed field in "included" (only owner_uuid) +#' @return Group object. +#' @name groups.contents NULL -#' api_clients.show is a method defined in Arvados class. -#' -#' @usage arv$api_clients.show(uuid) -#' @param uuid -#' @return ApiClient object. -#' @name api_clients.show +#' groups.shared +#' +#' groups.shared is a method defined in Arvados class. +#' +#' @usage arv$groups.shared(filters = NULL, +#' where = NULL, order = NULL, select = NULL, +#' distinct = NULL, limit = "100", offset = "0", +#' count = "exact", cluster_id = NULL, bypass_federation = NULL, +#' include_trash = NULL, include = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @param include_trash Include items whose is_trashed attribute is true. +#' @param include +#' @return Group object. +#' @name groups.shared NULL -#' api_clients.destroy is a method defined in Arvados class. -#' -#' @usage arv$api_clients.destroy(uuid) -#' @param uuid -#' @return ApiClient object. -#' @name api_clients.destroy +#' groups.trash +#' +#' groups.trash is a method defined in Arvados class. +#' +#' @usage arv$groups.trash(uuid) +#' @param uuid +#' @return Group object. +#' @name groups.trash NULL -#' authorized_keys.get is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.get(uuid) -#' @param uuid The UUID of the AuthorizedKey in question. -#' @return AuthorizedKey object. -#' @name authorized_keys.get +#' groups.untrash +#' +#' groups.untrash is a method defined in Arvados class. +#' +#' @usage arv$groups.untrash(uuid) +#' @param uuid +#' @return Group object. +#' @name groups.untrash NULL -#' authorized_keys.index is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.index(filters = NULL, +#' groups.list +#' +#' groups.list is a method defined in Arvados class. +#' +#' @usage arv$groups.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return AuthorizedKeyList object. -#' @name authorized_keys.index +#' count = "exact", cluster_id = NULL, bypass_federation = NULL, +#' include_trash = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @param include_trash Include items whose is_trashed attribute is true. +#' @return GroupList object. +#' @name groups.list NULL -#' authorized_keys.create is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.create(authorizedkey, -#' ensure_unique_name = "false") -#' @param authorizedKey AuthorizedKey object. +#' keep_services.get +#' +#' keep_services.get is a method defined in Arvados class. +#' +#' @usage arv$keep_services.get(uuid) +#' @param uuid The UUID of the KeepService in question. +#' @return KeepService object. +#' @name keep_services.get +NULL + +#' keep_services.create +#' +#' keep_services.create is a method defined in Arvados class. +#' +#' @usage arv$keep_services.create(keepservice, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param keepService KeepService object. #' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return AuthorizedKey object. -#' @name authorized_keys.create +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return KeepService object. +#' @name keep_services.create NULL -#' authorized_keys.update is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.update(authorizedkey, +#' keep_services.update +#' +#' keep_services.update is a method defined in Arvados class. +#' +#' @usage arv$keep_services.update(keepservice, #' uuid) -#' @param authorizedKey AuthorizedKey object. -#' @param uuid The UUID of the AuthorizedKey in question. -#' @return AuthorizedKey object. -#' @name authorized_keys.update +#' @param keepService KeepService object. +#' @param uuid The UUID of the KeepService in question. +#' @return KeepService object. +#' @name keep_services.update NULL -#' authorized_keys.delete is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.delete(uuid) -#' @param uuid The UUID of the AuthorizedKey in question. -#' @return AuthorizedKey object. -#' @name authorized_keys.delete +#' keep_services.delete +#' +#' keep_services.delete is a method defined in Arvados class. +#' +#' @usage arv$keep_services.delete(uuid) +#' @param uuid The UUID of the KeepService in question. +#' @return KeepService object. +#' @name keep_services.delete NULL -#' authorized_keys.list is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.list(filters = NULL, +#' keep_services.accessible +#' +#' keep_services.accessible is a method defined in Arvados class. +#' +#' @usage arv$keep_services.accessible(NULL) +#' @return KeepService object. +#' @name keep_services.accessible +NULL + +#' keep_services.list +#' +#' keep_services.list is a method defined in Arvados class. +#' +#' @usage arv$keep_services.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return AuthorizedKeyList object. -#' @name authorized_keys.list +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return KeepServiceList object. +#' @name keep_services.list NULL -#' authorized_keys.show is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.show(uuid) -#' @param uuid -#' @return AuthorizedKey object. -#' @name authorized_keys.show +#' links.get +#' +#' links.get is a method defined in Arvados class. +#' +#' @usage arv$links.get(uuid) +#' @param uuid The UUID of the Link in question. +#' @return Link object. +#' @name links.get NULL -#' authorized_keys.destroy is a method defined in Arvados class. -#' -#' @usage arv$authorized_keys.destroy(uuid) -#' @param uuid -#' @return AuthorizedKey object. -#' @name authorized_keys.destroy +#' links.create +#' +#' links.create is a method defined in Arvados class. +#' +#' @usage arv$links.create(link, ensure_unique_name = "false", +#' cluster_id = NULL) +#' @param link Link object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return Link object. +#' @name links.create NULL -#' container_requests.get is a method defined in Arvados class. -#' -#' @usage arv$container_requests.get(uuid) -#' @param uuid The UUID of the ContainerRequest in question. -#' @return ContainerRequest object. -#' @name container_requests.get +#' links.update +#' +#' links.update is a method defined in Arvados class. +#' +#' @usage arv$links.update(link, uuid) +#' @param link Link object. +#' @param uuid The UUID of the Link in question. +#' @return Link object. +#' @name links.update NULL -#' container_requests.index is a method defined in Arvados class. -#' -#' @usage arv$container_requests.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return ContainerRequestList object. -#' @name container_requests.index +#' links.delete +#' +#' links.delete is a method defined in Arvados class. +#' +#' @usage arv$links.delete(uuid) +#' @param uuid The UUID of the Link in question. +#' @return Link object. +#' @name links.delete NULL -#' container_requests.create is a method defined in Arvados class. -#' -#' @usage arv$container_requests.create(containerrequest, -#' ensure_unique_name = "false") -#' @param containerRequest ContainerRequest object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return ContainerRequest object. -#' @name container_requests.create +#' links.list +#' +#' links.list is a method defined in Arvados class. +#' +#' @usage arv$links.list(filters = NULL, +#' where = NULL, order = NULL, select = NULL, +#' distinct = NULL, limit = "100", offset = "0", +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return LinkList object. +#' @name links.list NULL -#' container_requests.update is a method defined in Arvados class. -#' -#' @usage arv$container_requests.update(containerrequest, -#' uuid) -#' @param containerRequest ContainerRequest object. -#' @param uuid The UUID of the ContainerRequest in question. -#' @return ContainerRequest object. -#' @name container_requests.update +#' links.get_permissions +#' +#' links.get_permissions is a method defined in Arvados class. +#' +#' @usage arv$links.get_permissions(uuid) +#' @param uuid +#' @return Link object. +#' @name links.get_permissions NULL -#' container_requests.delete is a method defined in Arvados class. -#' -#' @usage arv$container_requests.delete(uuid) -#' @param uuid The UUID of the ContainerRequest in question. -#' @return ContainerRequest object. -#' @name container_requests.delete +#' logs.get +#' +#' logs.get is a method defined in Arvados class. +#' +#' @usage arv$logs.get(uuid) +#' @param uuid The UUID of the Log in question. +#' @return Log object. +#' @name logs.get NULL -#' container_requests.list is a method defined in Arvados class. -#' -#' @usage arv$container_requests.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return ContainerRequestList object. -#' @name container_requests.list +#' logs.create +#' +#' logs.create is a method defined in Arvados class. +#' +#' @usage arv$logs.create(log, ensure_unique_name = "false", +#' cluster_id = NULL) +#' @param log Log object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return Log object. +#' @name logs.create NULL -#' container_requests.show is a method defined in Arvados class. -#' -#' @usage arv$container_requests.show(uuid) -#' @param uuid -#' @return ContainerRequest object. -#' @name container_requests.show +#' logs.update +#' +#' logs.update is a method defined in Arvados class. +#' +#' @usage arv$logs.update(log, uuid) +#' @param log Log object. +#' @param uuid The UUID of the Log in question. +#' @return Log object. +#' @name logs.update NULL -#' container_requests.destroy is a method defined in Arvados class. -#' -#' @usage arv$container_requests.destroy(uuid) -#' @param uuid -#' @return ContainerRequest object. -#' @name container_requests.destroy +#' logs.delete +#' +#' logs.delete is a method defined in Arvados class. +#' +#' @usage arv$logs.delete(uuid) +#' @param uuid The UUID of the Log in question. +#' @return Log object. +#' @name logs.delete NULL -#' collections.get is a method defined in Arvados class. -#' -#' @usage arv$collections.get(uuid) -#' @param uuid The UUID of the Collection in question. -#' @return Collection object. -#' @name collections.get +#' logs.list +#' +#' logs.list is a method defined in Arvados class. +#' +#' @usage arv$logs.list(filters = NULL, where = NULL, +#' order = NULL, select = NULL, distinct = NULL, +#' limit = "100", offset = "0", count = "exact", +#' cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return LogList object. +#' @name logs.list NULL -#' collections.index is a method defined in Arvados class. -#' -#' @usage arv$collections.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact", include_trash = NULL) -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @param include_trash Include collections whose is_trashed attribute is true. -#' @return CollectionList object. -#' @name collections.index +#' users.get +#' +#' users.get is a method defined in Arvados class. +#' +#' @usage arv$users.get(uuid) +#' @param uuid The UUID of the User in question. +#' @return User object. +#' @name users.get NULL -#' collections.create is a method defined in Arvados class. -#' -#' @usage arv$collections.create(collection, -#' ensure_unique_name = "false") -#' @param collection Collection object. +#' users.create +#' +#' users.create is a method defined in Arvados class. +#' +#' @usage arv$users.create(user, ensure_unique_name = "false", +#' cluster_id = NULL) +#' @param user User object. #' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Collection object. -#' @name collections.create +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return User object. +#' @name users.create NULL -#' collections.update is a method defined in Arvados class. -#' -#' @usage arv$collections.update(collection, -#' uuid) -#' @param collection Collection object. -#' @param uuid The UUID of the Collection in question. -#' @return Collection object. -#' @name collections.update +#' users.update +#' +#' users.update is a method defined in Arvados class. +#' +#' @usage arv$users.update(user, uuid, bypass_federation = NULL) +#' @param user User object. +#' @param uuid The UUID of the User in question. +#' @param bypass_federation +#' @return User object. +#' @name users.update NULL -#' collections.delete is a method defined in Arvados class. -#' -#' @usage arv$collections.delete(uuid) -#' @param uuid The UUID of the Collection in question. -#' @return Collection object. -#' @name collections.delete +#' users.delete +#' +#' users.delete is a method defined in Arvados class. +#' +#' @usage arv$users.delete(uuid) +#' @param uuid The UUID of the User in question. +#' @return User object. +#' @name users.delete NULL -#' collections.provenance is a method defined in Arvados class. -#' -#' @usage arv$collections.provenance(uuid) -#' @param uuid -#' @return Collection object. -#' @name collections.provenance -NULL - -#' collections.used_by is a method defined in Arvados class. -#' -#' @usage arv$collections.used_by(uuid) -#' @param uuid -#' @return Collection object. -#' @name collections.used_by -NULL - -#' collections.trash is a method defined in Arvados class. -#' -#' @usage arv$collections.trash(uuid) -#' @param uuid -#' @return Collection object. -#' @name collections.trash +#' users.current +#' +#' users.current is a method defined in Arvados class. +#' +#' @usage arv$users.current(NULL) +#' @return User object. +#' @name users.current NULL -#' collections.untrash is a method defined in Arvados class. -#' -#' @usage arv$collections.untrash(uuid) -#' @param uuid -#' @return Collection object. -#' @name collections.untrash +#' users.system +#' +#' users.system is a method defined in Arvados class. +#' +#' @usage arv$users.system(NULL) +#' @return User object. +#' @name users.system NULL -#' collections.list is a method defined in Arvados class. -#' -#' @usage arv$collections.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact", include_trash = NULL) -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @param include_trash Include collections whose is_trashed attribute is true. -#' @return CollectionList object. -#' @name collections.list +#' users.activate +#' +#' users.activate is a method defined in Arvados class. +#' +#' @usage arv$users.activate(uuid) +#' @param uuid +#' @return User object. +#' @name users.activate NULL -#' collections.show is a method defined in Arvados class. -#' -#' @usage arv$collections.show(uuid) -#' @param uuid -#' @return Collection object. -#' @name collections.show +#' users.setup +#' +#' users.setup is a method defined in Arvados class. +#' +#' @usage arv$users.setup(uuid = NULL, user = NULL, +#' repo_name = NULL, vm_uuid = NULL, send_notification_email = "false") +#' @param uuid +#' @param user +#' @param repo_name +#' @param vm_uuid +#' @param send_notification_email +#' @return User object. +#' @name users.setup NULL -#' collections.destroy is a method defined in Arvados class. -#' -#' @usage arv$collections.destroy(uuid) -#' @param uuid -#' @return Collection object. -#' @name collections.destroy +#' users.unsetup +#' +#' users.unsetup is a method defined in Arvados class. +#' +#' @usage arv$users.unsetup(uuid) +#' @param uuid +#' @return User object. +#' @name users.unsetup NULL -#' humans.get is a method defined in Arvados class. -#' -#' @usage arv$humans.get(uuid) -#' @param uuid The UUID of the Human in question. -#' @return Human object. -#' @name humans.get +#' users.merge +#' +#' users.merge is a method defined in Arvados class. +#' +#' @usage arv$users.merge(new_owner_uuid, +#' new_user_token = NULL, redirect_to_new_user = NULL, +#' old_user_uuid = NULL, new_user_uuid = NULL) +#' @param new_owner_uuid +#' @param new_user_token +#' @param redirect_to_new_user +#' @param old_user_uuid +#' @param new_user_uuid +#' @return User object. +#' @name users.merge NULL -#' humans.index is a method defined in Arvados class. -#' -#' @usage arv$humans.index(filters = NULL, +#' users.list +#' +#' users.list is a method defined in Arvados class. +#' +#' @usage arv$users.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return HumanList object. -#' @name humans.index -NULL - -#' humans.create is a method defined in Arvados class. -#' -#' @usage arv$humans.create(human, ensure_unique_name = "false") -#' @param human Human object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Human object. -#' @name humans.create -NULL - -#' humans.update is a method defined in Arvados class. -#' -#' @usage arv$humans.update(human, uuid) -#' @param human Human object. -#' @param uuid The UUID of the Human in question. -#' @return Human object. -#' @name humans.update +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return UserList object. +#' @name users.list NULL -#' humans.delete is a method defined in Arvados class. -#' -#' @usage arv$humans.delete(uuid) -#' @param uuid The UUID of the Human in question. -#' @return Human object. -#' @name humans.delete +#' repositories.get +#' +#' repositories.get is a method defined in Arvados class. +#' +#' @usage arv$repositories.get(uuid) +#' @param uuid The UUID of the Repository in question. +#' @return Repository object. +#' @name repositories.get NULL -#' humans.list is a method defined in Arvados class. -#' -#' @usage arv$humans.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return HumanList object. -#' @name humans.list +#' repositories.create +#' +#' repositories.create is a method defined in Arvados class. +#' +#' @usage arv$repositories.create(repository, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param repository Repository object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return Repository object. +#' @name repositories.create NULL -#' humans.show is a method defined in Arvados class. -#' -#' @usage arv$humans.show(uuid) -#' @param uuid -#' @return Human object. -#' @name humans.show +#' repositories.update +#' +#' repositories.update is a method defined in Arvados class. +#' +#' @usage arv$repositories.update(repository, +#' uuid) +#' @param repository Repository object. +#' @param uuid The UUID of the Repository in question. +#' @return Repository object. +#' @name repositories.update NULL -#' humans.destroy is a method defined in Arvados class. -#' -#' @usage arv$humans.destroy(uuid) -#' @param uuid -#' @return Human object. -#' @name humans.destroy +#' repositories.delete +#' +#' repositories.delete is a method defined in Arvados class. +#' +#' @usage arv$repositories.delete(uuid) +#' @param uuid The UUID of the Repository in question. +#' @return Repository object. +#' @name repositories.delete NULL -#' job_tasks.get is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.get(uuid) -#' @param uuid The UUID of the JobTask in question. -#' @return JobTask object. -#' @name job_tasks.get +#' repositories.get_all_permissions +#' +#' repositories.get_all_permissions is a method defined in Arvados class. +#' +#' @usage arv$repositories.get_all_permissions(NULL) +#' @return Repository object. +#' @name repositories.get_all_permissions NULL -#' job_tasks.index is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.index(filters = NULL, +#' repositories.list +#' +#' repositories.list is a method defined in Arvados class. +#' +#' @usage arv$repositories.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return JobTaskList object. -#' @name job_tasks.index -NULL - -#' job_tasks.create is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.create(jobtask, ensure_unique_name = "false") -#' @param jobTask JobTask object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return JobTask object. -#' @name job_tasks.create +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return RepositoryList object. +#' @name repositories.list NULL -#' job_tasks.update is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.update(jobtask, uuid) -#' @param jobTask JobTask object. -#' @param uuid The UUID of the JobTask in question. -#' @return JobTask object. -#' @name job_tasks.update +#' virtual_machines.get +#' +#' virtual_machines.get is a method defined in Arvados class. +#' +#' @usage arv$virtual_machines.get(uuid) +#' @param uuid The UUID of the VirtualMachine in question. +#' @return VirtualMachine object. +#' @name virtual_machines.get NULL -#' job_tasks.delete is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.delete(uuid) -#' @param uuid The UUID of the JobTask in question. -#' @return JobTask object. -#' @name job_tasks.delete +#' virtual_machines.create +#' +#' virtual_machines.create is a method defined in Arvados class. +#' +#' @usage arv$virtual_machines.create(virtualmachine, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param virtualMachine VirtualMachine object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return VirtualMachine object. +#' @name virtual_machines.create NULL -#' job_tasks.list is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return JobTaskList object. -#' @name job_tasks.list +#' virtual_machines.update +#' +#' virtual_machines.update is a method defined in Arvados class. +#' +#' @usage arv$virtual_machines.update(virtualmachine, +#' uuid) +#' @param virtualMachine VirtualMachine object. +#' @param uuid The UUID of the VirtualMachine in question. +#' @return VirtualMachine object. +#' @name virtual_machines.update NULL -#' job_tasks.show is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.show(uuid) -#' @param uuid -#' @return JobTask object. -#' @name job_tasks.show +#' virtual_machines.delete +#' +#' virtual_machines.delete is a method defined in Arvados class. +#' +#' @usage arv$virtual_machines.delete(uuid) +#' @param uuid The UUID of the VirtualMachine in question. +#' @return VirtualMachine object. +#' @name virtual_machines.delete NULL -#' job_tasks.destroy is a method defined in Arvados class. -#' -#' @usage arv$job_tasks.destroy(uuid) -#' @param uuid -#' @return JobTask object. -#' @name job_tasks.destroy +#' virtual_machines.logins +#' +#' virtual_machines.logins is a method defined in Arvados class. +#' +#' @usage arv$virtual_machines.logins(uuid) +#' @param uuid +#' @return VirtualMachine object. +#' @name virtual_machines.logins NULL -#' links.get is a method defined in Arvados class. -#' -#' @usage arv$links.get(uuid) -#' @param uuid The UUID of the Link in question. -#' @return Link object. -#' @name links.get +#' virtual_machines.get_all_logins +#' +#' virtual_machines.get_all_logins is a method defined in Arvados class. +#' +#' @usage arv$virtual_machines.get_all_logins(NULL) +#' @return VirtualMachine object. +#' @name virtual_machines.get_all_logins NULL -#' links.index is a method defined in Arvados class. -#' -#' @usage arv$links.index(filters = NULL, +#' virtual_machines.list +#' +#' virtual_machines.list is a method defined in Arvados class. +#' +#' @usage arv$virtual_machines.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return LinkList object. -#' @name links.index +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return VirtualMachineList object. +#' @name virtual_machines.list NULL -#' links.create is a method defined in Arvados class. -#' -#' @usage arv$links.create(link, ensure_unique_name = "false") -#' @param link Link object. +#' workflows.get +#' +#' workflows.get is a method defined in Arvados class. +#' +#' @usage arv$workflows.get(uuid) +#' @param uuid The UUID of the Workflow in question. +#' @return Workflow object. +#' @name workflows.get +NULL + +#' workflows.create +#' +#' workflows.create is a method defined in Arvados class. +#' +#' @usage arv$workflows.create(workflow, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param workflow Workflow object. #' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Link object. -#' @name links.create +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return Workflow object. +#' @name workflows.create NULL -#' links.update is a method defined in Arvados class. -#' -#' @usage arv$links.update(link, uuid) -#' @param link Link object. -#' @param uuid The UUID of the Link in question. -#' @return Link object. -#' @name links.update +#' workflows.update +#' +#' workflows.update is a method defined in Arvados class. +#' +#' @usage arv$workflows.update(workflow, +#' uuid) +#' @param workflow Workflow object. +#' @param uuid The UUID of the Workflow in question. +#' @return Workflow object. +#' @name workflows.update NULL -#' links.delete is a method defined in Arvados class. -#' -#' @usage arv$links.delete(uuid) -#' @param uuid The UUID of the Link in question. -#' @return Link object. -#' @name links.delete +#' workflows.delete +#' +#' workflows.delete is a method defined in Arvados class. +#' +#' @usage arv$workflows.delete(uuid) +#' @param uuid The UUID of the Workflow in question. +#' @return Workflow object. +#' @name workflows.delete NULL -#' links.list is a method defined in Arvados class. -#' -#' @usage arv$links.list(filters = NULL, +#' workflows.list +#' +#' workflows.list is a method defined in Arvados class. +#' +#' @usage arv$workflows.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return LinkList object. -#' @name links.list -NULL - -#' links.show is a method defined in Arvados class. -#' -#' @usage arv$links.show(uuid) -#' @param uuid -#' @return Link object. -#' @name links.show -NULL - -#' links.destroy is a method defined in Arvados class. -#' -#' @usage arv$links.destroy(uuid) -#' @param uuid -#' @return Link object. -#' @name links.destroy +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return WorkflowList object. +#' @name workflows.list NULL -#' links.get_permissions is a method defined in Arvados class. -#' -#' @usage arv$links.get_permissions(uuid) -#' @param uuid -#' @return Link object. -#' @name links.get_permissions +#' user_agreements.get +#' +#' user_agreements.get is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.get(uuid) +#' @param uuid The UUID of the UserAgreement in question. +#' @return UserAgreement object. +#' @name user_agreements.get NULL -#' jobs.get is a method defined in Arvados class. -#' -#' @usage arv$jobs.get(uuid) -#' @param uuid The UUID of the Job in question. -#' @return Job object. -#' @name jobs.get +#' user_agreements.create +#' +#' user_agreements.create is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.create(useragreement, +#' ensure_unique_name = "false", cluster_id = NULL) +#' @param userAgreement UserAgreement object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @param cluster_id Create object on a remote federated cluster instead of the current one. +#' @return UserAgreement object. +#' @name user_agreements.create NULL -#' jobs.index is a method defined in Arvados class. -#' -#' @usage arv$jobs.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return JobList object. -#' @name jobs.index +#' user_agreements.update +#' +#' user_agreements.update is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.update(useragreement, +#' uuid) +#' @param userAgreement UserAgreement object. +#' @param uuid The UUID of the UserAgreement in question. +#' @return UserAgreement object. +#' @name user_agreements.update NULL -#' jobs.create is a method defined in Arvados class. -#' -#' @usage arv$jobs.create(job, ensure_unique_name = "false", -#' find_or_create = "false", filters = NULL, -#' minimum_script_version = NULL, exclude_script_versions = NULL) -#' @param job Job object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @param find_or_create -#' @param filters -#' @param minimum_script_version -#' @param exclude_script_versions -#' @return Job object. -#' @name jobs.create +#' user_agreements.delete +#' +#' user_agreements.delete is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.delete(uuid) +#' @param uuid The UUID of the UserAgreement in question. +#' @return UserAgreement object. +#' @name user_agreements.delete NULL -#' jobs.update is a method defined in Arvados class. -#' -#' @usage arv$jobs.update(job, uuid) -#' @param job Job object. -#' @param uuid The UUID of the Job in question. -#' @return Job object. -#' @name jobs.update +#' user_agreements.signatures +#' +#' user_agreements.signatures is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.signatures(NULL) +#' @return UserAgreement object. +#' @name user_agreements.signatures NULL -#' jobs.delete is a method defined in Arvados class. -#' -#' @usage arv$jobs.delete(uuid) -#' @param uuid The UUID of the Job in question. -#' @return Job object. -#' @name jobs.delete +#' user_agreements.sign +#' +#' user_agreements.sign is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.sign(NULL) +#' @return UserAgreement object. +#' @name user_agreements.sign NULL -#' jobs.queue is a method defined in Arvados class. -#' -#' @usage arv$jobs.queue(filters = NULL, +#' user_agreements.list +#' +#' user_agreements.list is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.list(filters = NULL, #' where = NULL, order = NULL, select = NULL, #' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return Job object. -#' @name jobs.queue +#' count = "exact", cluster_id = NULL, bypass_federation = NULL) +#' @param filters +#' @param where +#' @param order +#' @param select +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param cluster_id List objects on a remote federated cluster instead of the current one. +#' @param bypass_federation bypass federation behavior, list items from local instance database only +#' @return UserAgreementList object. +#' @name user_agreements.list NULL -#' jobs.queue_size is a method defined in Arvados class. -#' -#' @usage arv$jobs.queue_size(NULL) -#' @return Job object. -#' @name jobs.queue_size +#' user_agreements.new +#' +#' user_agreements.new is a method defined in Arvados class. +#' +#' @usage arv$user_agreements.new(NULL) +#' @return UserAgreement object. +#' @name user_agreements.new NULL -#' jobs.cancel is a method defined in Arvados class. -#' -#' @usage arv$jobs.cancel(uuid) -#' @param uuid -#' @return Job object. -#' @name jobs.cancel +#' configs.get +#' +#' configs.get is a method defined in Arvados class. +#' +#' @usage arv$configs.get(NULL) +#' @return object. +#' @name configs.get NULL -#' jobs.lock is a method defined in Arvados class. -#' -#' @usage arv$jobs.lock(uuid) -#' @param uuid -#' @return Job object. -#' @name jobs.lock +#' project.get +#' +#' projects.get is equivalent to groups.get method. +#' +#' @usage arv$projects.get(uuid) +#' @param uuid The UUID of the Group in question. +#' @return Group object. +#' @name projects.get NULL -#' jobs.list is a method defined in Arvados class. -#' -#' @usage arv$jobs.list(filters = NULL, where = NULL, -#' order = NULL, select = NULL, distinct = NULL, -#' limit = "100", offset = "0", count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return JobList object. -#' @name jobs.list +#' project.create +#' +#' projects.create wrapps groups.create method by setting group_class attribute to "project". +#' +#' @usage arv$projects.create(group, ensure_unique_name = "false") +#' @param group Group object. +#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. +#' @return Group object. +#' @name projects.create NULL -#' jobs.show is a method defined in Arvados class. -#' -#' @usage arv$jobs.show(uuid) -#' @param uuid -#' @return Job object. -#' @name jobs.show +#' project.update +#' +#' projects.update wrapps groups.update method by setting group_class attribute to "project". +#' +#' @usage arv$projects.update(group, uuid) +#' @param group Group object. +#' @param uuid The UUID of the Group in question. +#' @return Group object. +#' @name projects.update NULL -#' jobs.destroy is a method defined in Arvados class. -#' -#' @usage arv$jobs.destroy(uuid) -#' @param uuid -#' @return Job object. -#' @name jobs.destroy +#' project.delete +#' +#' projects.delete is equivalent to groups.delete method. +#' +#' @usage arv$project.delete(uuid) +#' @param uuid The UUID of the Group in question. +#' @return Group object. +#' @name projects.delete NULL -#' keep_disks.get is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.get(uuid) -#' @param uuid The UUID of the KeepDisk in question. -#' @return KeepDisk object. -#' @name keep_disks.get +#' project.list +#' +#' projects.list wrapps groups.list method by setting group_class attribute to "project". +#' +#' @usage arv$projects.list(filters = NULL, +#' where = NULL, order = NULL, distinct = NULL, +#' limit = "100", offset = "0", count = "exact", +#' include_trash = NULL, uuid = NULL, recursive = NULL) +#' @param filters +#' @param where +#' @param order +#' @param distinct +#' @param limit +#' @param offset +#' @param count +#' @param include_trash Include items whose is_trashed attribute is true. +#' @param uuid +#' @param recursive Include contents from child groups recursively. +#' @return Group object. +#' @name projects.list +NULL + +#' Arvados +#' +#' Arvados class gives users ability to access Arvados REST API. +#' +#' @section Usage: +#' \preformatted{arv = Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)} +#' +#' @section Arguments: +#' \describe{ +#' \item{authToken}{Authentification token. If not specified ARVADOS_API_TOKEN environment variable will be used.} +#' \item{hostName}{Host name. If not specified ARVADOS_API_HOST environment variable will be used.} +#' \item{numRetries}{Number which specifies how many times to retry failed service requests.} +#' } +#' +#' @section Methods: +#' \describe{ +#' \item{}{\code{\link{api_client_authorizations.create}}} +#' \item{}{\code{\link{api_client_authorizations.create_system_auth}}} +#' \item{}{\code{\link{api_client_authorizations.current}}} +#' \item{}{\code{\link{api_client_authorizations.delete}}} +#' \item{}{\code{\link{api_client_authorizations.get}}} +#' \item{}{\code{\link{api_client_authorizations.list}}} +#' \item{}{\code{\link{api_client_authorizations.update}}} +#' \item{}{\code{\link{api_clients.create}}} +#' \item{}{\code{\link{api_clients.delete}}} +#' \item{}{\code{\link{api_clients.get}}} +#' \item{}{\code{\link{api_clients.list}}} +#' \item{}{\code{\link{api_clients.update}}} +#' \item{}{\code{\link{authorized_keys.create}}} +#' \item{}{\code{\link{authorized_keys.delete}}} +#' \item{}{\code{\link{authorized_keys.get}}} +#' \item{}{\code{\link{authorized_keys.list}}} +#' \item{}{\code{\link{authorized_keys.update}}} +#' \item{}{\code{\link{collections.create}}} +#' \item{}{\code{\link{collections.delete}}} +#' \item{}{\code{\link{collections.get}}} +#' \item{}{\code{\link{collections.list}}} +#' \item{}{\code{\link{collections.provenance}}} +#' \item{}{\code{\link{collections.trash}}} +#' \item{}{\code{\link{collections.untrash}}} +#' \item{}{\code{\link{collections.update}}} +#' \item{}{\code{\link{collections.used_by}}} +#' \item{}{\code{\link{configs.get}}} +#' \item{}{\code{\link{container_requests.create}}} +#' \item{}{\code{\link{container_requests.delete}}} +#' \item{}{\code{\link{container_requests.get}}} +#' \item{}{\code{\link{container_requests.list}}} +#' \item{}{\code{\link{container_requests.update}}} +#' \item{}{\code{\link{containers.auth}}} +#' \item{}{\code{\link{containers.create}}} +#' \item{}{\code{\link{containers.current}}} +#' \item{}{\code{\link{containers.delete}}} +#' \item{}{\code{\link{containers.get}}} +#' \item{}{\code{\link{containers.list}}} +#' \item{}{\code{\link{containers.lock}}} +#' \item{}{\code{\link{containers.secret_mounts}}} +#' \item{}{\code{\link{containers.unlock}}} +#' \item{}{\code{\link{containers.update}}} +#' \item{}{\code{\link{groups.contents}}} +#' \item{}{\code{\link{groups.create}}} +#' \item{}{\code{\link{groups.delete}}} +#' \item{}{\code{\link{groups.get}}} +#' \item{}{\code{\link{groups.list}}} +#' \item{}{\code{\link{groups.shared}}} +#' \item{}{\code{\link{groups.trash}}} +#' \item{}{\code{\link{groups.untrash}}} +#' \item{}{\code{\link{groups.update}}} +#' \item{}{\code{\link{keep_services.accessible}}} +#' \item{}{\code{\link{keep_services.create}}} +#' \item{}{\code{\link{keep_services.delete}}} +#' \item{}{\code{\link{keep_services.get}}} +#' \item{}{\code{\link{keep_services.list}}} +#' \item{}{\code{\link{keep_services.update}}} +#' \item{}{\code{\link{links.create}}} +#' \item{}{\code{\link{links.delete}}} +#' \item{}{\code{\link{links.get}}} +#' \item{}{\code{\link{links.get_permissions}}} +#' \item{}{\code{\link{links.list}}} +#' \item{}{\code{\link{links.update}}} +#' \item{}{\code{\link{logs.create}}} +#' \item{}{\code{\link{logs.delete}}} +#' \item{}{\code{\link{logs.get}}} +#' \item{}{\code{\link{logs.list}}} +#' \item{}{\code{\link{logs.update}}} +#' \item{}{\code{\link{projects.create}}} +#' \item{}{\code{\link{projects.delete}}} +#' \item{}{\code{\link{projects.get}}} +#' \item{}{\code{\link{projects.list}}} +#' \item{}{\code{\link{projects.update}}} +#' \item{}{\code{\link{repositories.create}}} +#' \item{}{\code{\link{repositories.delete}}} +#' \item{}{\code{\link{repositories.get}}} +#' \item{}{\code{\link{repositories.get_all_permissions}}} +#' \item{}{\code{\link{repositories.list}}} +#' \item{}{\code{\link{repositories.update}}} +#' \item{}{\code{\link{user_agreements.create}}} +#' \item{}{\code{\link{user_agreements.delete}}} +#' \item{}{\code{\link{user_agreements.get}}} +#' \item{}{\code{\link{user_agreements.list}}} +#' \item{}{\code{\link{user_agreements.new}}} +#' \item{}{\code{\link{user_agreements.sign}}} +#' \item{}{\code{\link{user_agreements.signatures}}} +#' \item{}{\code{\link{user_agreements.update}}} +#' \item{}{\code{\link{users.activate}}} +#' \item{}{\code{\link{users.create}}} +#' \item{}{\code{\link{users.current}}} +#' \item{}{\code{\link{users.delete}}} +#' \item{}{\code{\link{users.get}}} +#' \item{}{\code{\link{users.list}}} +#' \item{}{\code{\link{users.merge}}} +#' \item{}{\code{\link{users.setup}}} +#' \item{}{\code{\link{users.system}}} +#' \item{}{\code{\link{users.unsetup}}} +#' \item{}{\code{\link{users.update}}} +#' \item{}{\code{\link{virtual_machines.create}}} +#' \item{}{\code{\link{virtual_machines.delete}}} +#' \item{}{\code{\link{virtual_machines.get}}} +#' \item{}{\code{\link{virtual_machines.get_all_logins}}} +#' \item{}{\code{\link{virtual_machines.list}}} +#' \item{}{\code{\link{virtual_machines.logins}}} +#' \item{}{\code{\link{virtual_machines.update}}} +#' \item{}{\code{\link{workflows.create}}} +#' \item{}{\code{\link{workflows.delete}}} +#' \item{}{\code{\link{workflows.get}}} +#' \item{}{\code{\link{workflows.list}}} +#' \item{}{\code{\link{workflows.update}}} +#' } +#' +#' @name Arvados +#' @examples +#' \dontrun{ +#' arv <- Arvados$new("your Arvados token", "example.arvadosapi.com") +#' +#' collection <- arv$collections.get("uuid") +#' +#' collectionList <- arv$collections.list(list(list("name", "like", "Test%"))) +#' collectionList <- listAll(arv$collections.list, list(list("name", "like", "Test%"))) +#' +#' deletedCollection <- arv$collections.delete("uuid") +#' +#' updatedCollection <- arv$collections.update(list(name = "New name", description = "New description"), +#' "uuid") +#' +#' createdCollection <- arv$collections.create(list(name = "Example", +#' description = "This is a test collection")) +#' } NULL -#' keep_disks.index is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return KeepDiskList object. -#' @name keep_disks.index -NULL +#' @export +Arvados <- R6::R6Class( -#' keep_disks.create is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.create(keepdisk, -#' ensure_unique_name = "false") -#' @param keepDisk KeepDisk object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return KeepDisk object. -#' @name keep_disks.create -NULL - -#' keep_disks.update is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.update(keepdisk, -#' uuid) -#' @param keepDisk KeepDisk object. -#' @param uuid The UUID of the KeepDisk in question. -#' @return KeepDisk object. -#' @name keep_disks.update -NULL - -#' keep_disks.delete is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.delete(uuid) -#' @param uuid The UUID of the KeepDisk in question. -#' @return KeepDisk object. -#' @name keep_disks.delete -NULL - -#' keep_disks.ping is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.ping(uuid = NULL, -#' ping_secret, node_uuid = NULL, filesystem_uuid = NULL, -#' service_host = NULL, service_port, service_ssl_flag) -#' @param uuid -#' @param ping_secret -#' @param node_uuid -#' @param filesystem_uuid -#' @param service_host -#' @param service_port -#' @param service_ssl_flag -#' @return KeepDisk object. -#' @name keep_disks.ping -NULL - -#' keep_disks.list is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return KeepDiskList object. -#' @name keep_disks.list -NULL - -#' keep_disks.show is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.show(uuid) -#' @param uuid -#' @return KeepDisk object. -#' @name keep_disks.show -NULL - -#' keep_disks.destroy is a method defined in Arvados class. -#' -#' @usage arv$keep_disks.destroy(uuid) -#' @param uuid -#' @return KeepDisk object. -#' @name keep_disks.destroy -NULL - -#' keep_services.get is a method defined in Arvados class. -#' -#' @usage arv$keep_services.get(uuid) -#' @param uuid The UUID of the KeepService in question. -#' @return KeepService object. -#' @name keep_services.get -NULL - -#' keep_services.index is a method defined in Arvados class. -#' -#' @usage arv$keep_services.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return KeepServiceList object. -#' @name keep_services.index -NULL - -#' keep_services.create is a method defined in Arvados class. -#' -#' @usage arv$keep_services.create(keepservice, -#' ensure_unique_name = "false") -#' @param keepService KeepService object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return KeepService object. -#' @name keep_services.create -NULL - -#' keep_services.update is a method defined in Arvados class. -#' -#' @usage arv$keep_services.update(keepservice, -#' uuid) -#' @param keepService KeepService object. -#' @param uuid The UUID of the KeepService in question. -#' @return KeepService object. -#' @name keep_services.update -NULL - -#' keep_services.delete is a method defined in Arvados class. -#' -#' @usage arv$keep_services.delete(uuid) -#' @param uuid The UUID of the KeepService in question. -#' @return KeepService object. -#' @name keep_services.delete -NULL - -#' keep_services.accessible is a method defined in Arvados class. -#' -#' @usage arv$keep_services.accessible(NULL) -#' @return KeepService object. -#' @name keep_services.accessible -NULL - -#' keep_services.list is a method defined in Arvados class. -#' -#' @usage arv$keep_services.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return KeepServiceList object. -#' @name keep_services.list -NULL - -#' keep_services.show is a method defined in Arvados class. -#' -#' @usage arv$keep_services.show(uuid) -#' @param uuid -#' @return KeepService object. -#' @name keep_services.show -NULL - -#' keep_services.destroy is a method defined in Arvados class. -#' -#' @usage arv$keep_services.destroy(uuid) -#' @param uuid -#' @return KeepService object. -#' @name keep_services.destroy -NULL - -#' pipeline_templates.get is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.get(uuid) -#' @param uuid The UUID of the PipelineTemplate in question. -#' @return PipelineTemplate object. -#' @name pipeline_templates.get -NULL - -#' pipeline_templates.index is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return PipelineTemplateList object. -#' @name pipeline_templates.index -NULL - -#' pipeline_templates.create is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.create(pipelinetemplate, -#' ensure_unique_name = "false") -#' @param pipelineTemplate PipelineTemplate object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return PipelineTemplate object. -#' @name pipeline_templates.create -NULL - -#' pipeline_templates.update is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.update(pipelinetemplate, -#' uuid) -#' @param pipelineTemplate PipelineTemplate object. -#' @param uuid The UUID of the PipelineTemplate in question. -#' @return PipelineTemplate object. -#' @name pipeline_templates.update -NULL - -#' pipeline_templates.delete is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.delete(uuid) -#' @param uuid The UUID of the PipelineTemplate in question. -#' @return PipelineTemplate object. -#' @name pipeline_templates.delete -NULL - -#' pipeline_templates.list is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return PipelineTemplateList object. -#' @name pipeline_templates.list -NULL - -#' pipeline_templates.show is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.show(uuid) -#' @param uuid -#' @return PipelineTemplate object. -#' @name pipeline_templates.show -NULL - -#' pipeline_templates.destroy is a method defined in Arvados class. -#' -#' @usage arv$pipeline_templates.destroy(uuid) -#' @param uuid -#' @return PipelineTemplate object. -#' @name pipeline_templates.destroy -NULL - -#' pipeline_instances.get is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.get(uuid) -#' @param uuid The UUID of the PipelineInstance in question. -#' @return PipelineInstance object. -#' @name pipeline_instances.get -NULL - -#' pipeline_instances.index is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return PipelineInstanceList object. -#' @name pipeline_instances.index -NULL - -#' pipeline_instances.create is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.create(pipelineinstance, -#' ensure_unique_name = "false") -#' @param pipelineInstance PipelineInstance object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return PipelineInstance object. -#' @name pipeline_instances.create -NULL - -#' pipeline_instances.update is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.update(pipelineinstance, -#' uuid) -#' @param pipelineInstance PipelineInstance object. -#' @param uuid The UUID of the PipelineInstance in question. -#' @return PipelineInstance object. -#' @name pipeline_instances.update -NULL - -#' pipeline_instances.delete is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.delete(uuid) -#' @param uuid The UUID of the PipelineInstance in question. -#' @return PipelineInstance object. -#' @name pipeline_instances.delete -NULL - -#' pipeline_instances.cancel is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.cancel(uuid) -#' @param uuid -#' @return PipelineInstance object. -#' @name pipeline_instances.cancel -NULL - -#' pipeline_instances.list is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return PipelineInstanceList object. -#' @name pipeline_instances.list -NULL - -#' pipeline_instances.show is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.show(uuid) -#' @param uuid -#' @return PipelineInstance object. -#' @name pipeline_instances.show -NULL - -#' pipeline_instances.destroy is a method defined in Arvados class. -#' -#' @usage arv$pipeline_instances.destroy(uuid) -#' @param uuid -#' @return PipelineInstance object. -#' @name pipeline_instances.destroy -NULL - -#' nodes.get is a method defined in Arvados class. -#' -#' @usage arv$nodes.get(uuid) -#' @param uuid The UUID of the Node in question. -#' @return Node object. -#' @name nodes.get -NULL - -#' nodes.index is a method defined in Arvados class. -#' -#' @usage arv$nodes.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return NodeList object. -#' @name nodes.index -NULL - -#' nodes.create is a method defined in Arvados class. -#' -#' @usage arv$nodes.create(node, ensure_unique_name = "false", -#' assign_slot = NULL) -#' @param node Node object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @param assign_slot assign slot and hostname -#' @return Node object. -#' @name nodes.create -NULL - -#' nodes.update is a method defined in Arvados class. -#' -#' @usage arv$nodes.update(node, uuid, assign_slot = NULL) -#' @param node Node object. -#' @param uuid The UUID of the Node in question. -#' @param assign_slot assign slot and hostname -#' @return Node object. -#' @name nodes.update -NULL - -#' nodes.delete is a method defined in Arvados class. -#' -#' @usage arv$nodes.delete(uuid) -#' @param uuid The UUID of the Node in question. -#' @return Node object. -#' @name nodes.delete -NULL - -#' nodes.ping is a method defined in Arvados class. -#' -#' @usage arv$nodes.ping(uuid, ping_secret) -#' @param uuid -#' @param ping_secret -#' @return Node object. -#' @name nodes.ping -NULL - -#' nodes.list is a method defined in Arvados class. -#' -#' @usage arv$nodes.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return NodeList object. -#' @name nodes.list -NULL - -#' nodes.show is a method defined in Arvados class. -#' -#' @usage arv$nodes.show(uuid) -#' @param uuid -#' @return Node object. -#' @name nodes.show -NULL - -#' nodes.destroy is a method defined in Arvados class. -#' -#' @usage arv$nodes.destroy(uuid) -#' @param uuid -#' @return Node object. -#' @name nodes.destroy -NULL - -#' repositories.get is a method defined in Arvados class. -#' -#' @usage arv$repositories.get(uuid) -#' @param uuid The UUID of the Repository in question. -#' @return Repository object. -#' @name repositories.get -NULL - -#' repositories.index is a method defined in Arvados class. -#' -#' @usage arv$repositories.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return RepositoryList object. -#' @name repositories.index -NULL - -#' repositories.create is a method defined in Arvados class. -#' -#' @usage arv$repositories.create(repository, -#' ensure_unique_name = "false") -#' @param repository Repository object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Repository object. -#' @name repositories.create -NULL - -#' repositories.update is a method defined in Arvados class. -#' -#' @usage arv$repositories.update(repository, -#' uuid) -#' @param repository Repository object. -#' @param uuid The UUID of the Repository in question. -#' @return Repository object. -#' @name repositories.update -NULL - -#' repositories.delete is a method defined in Arvados class. -#' -#' @usage arv$repositories.delete(uuid) -#' @param uuid The UUID of the Repository in question. -#' @return Repository object. -#' @name repositories.delete -NULL - -#' repositories.get_all_permissions is a method defined in Arvados class. -#' -#' @usage arv$repositories.get_all_permissions(NULL) -#' @return Repository object. -#' @name repositories.get_all_permissions -NULL - -#' repositories.list is a method defined in Arvados class. -#' -#' @usage arv$repositories.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return RepositoryList object. -#' @name repositories.list -NULL - -#' repositories.show is a method defined in Arvados class. -#' -#' @usage arv$repositories.show(uuid) -#' @param uuid -#' @return Repository object. -#' @name repositories.show -NULL - -#' repositories.destroy is a method defined in Arvados class. -#' -#' @usage arv$repositories.destroy(uuid) -#' @param uuid -#' @return Repository object. -#' @name repositories.destroy -NULL - -#' specimens.get is a method defined in Arvados class. -#' -#' @usage arv$specimens.get(uuid) -#' @param uuid The UUID of the Specimen in question. -#' @return Specimen object. -#' @name specimens.get -NULL - -#' specimens.index is a method defined in Arvados class. -#' -#' @usage arv$specimens.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return SpecimenList object. -#' @name specimens.index -NULL - -#' specimens.create is a method defined in Arvados class. -#' -#' @usage arv$specimens.create(specimen, -#' ensure_unique_name = "false") -#' @param specimen Specimen object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Specimen object. -#' @name specimens.create -NULL - -#' specimens.update is a method defined in Arvados class. -#' -#' @usage arv$specimens.update(specimen, -#' uuid) -#' @param specimen Specimen object. -#' @param uuid The UUID of the Specimen in question. -#' @return Specimen object. -#' @name specimens.update -NULL - -#' specimens.delete is a method defined in Arvados class. -#' -#' @usage arv$specimens.delete(uuid) -#' @param uuid The UUID of the Specimen in question. -#' @return Specimen object. -#' @name specimens.delete -NULL - -#' specimens.list is a method defined in Arvados class. -#' -#' @usage arv$specimens.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return SpecimenList object. -#' @name specimens.list -NULL - -#' specimens.show is a method defined in Arvados class. -#' -#' @usage arv$specimens.show(uuid) -#' @param uuid -#' @return Specimen object. -#' @name specimens.show -NULL - -#' specimens.destroy is a method defined in Arvados class. -#' -#' @usage arv$specimens.destroy(uuid) -#' @param uuid -#' @return Specimen object. -#' @name specimens.destroy -NULL - -#' logs.get is a method defined in Arvados class. -#' -#' @usage arv$logs.get(uuid) -#' @param uuid The UUID of the Log in question. -#' @return Log object. -#' @name logs.get -NULL - -#' logs.index is a method defined in Arvados class. -#' -#' @usage arv$logs.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return LogList object. -#' @name logs.index -NULL - -#' logs.create is a method defined in Arvados class. -#' -#' @usage arv$logs.create(log, ensure_unique_name = "false") -#' @param log Log object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Log object. -#' @name logs.create -NULL - -#' logs.update is a method defined in Arvados class. -#' -#' @usage arv$logs.update(log, uuid) -#' @param log Log object. -#' @param uuid The UUID of the Log in question. -#' @return Log object. -#' @name logs.update -NULL - -#' logs.delete is a method defined in Arvados class. -#' -#' @usage arv$logs.delete(uuid) -#' @param uuid The UUID of the Log in question. -#' @return Log object. -#' @name logs.delete -NULL - -#' logs.list is a method defined in Arvados class. -#' -#' @usage arv$logs.list(filters = NULL, where = NULL, -#' order = NULL, select = NULL, distinct = NULL, -#' limit = "100", offset = "0", count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return LogList object. -#' @name logs.list -NULL - -#' logs.show is a method defined in Arvados class. -#' -#' @usage arv$logs.show(uuid) -#' @param uuid -#' @return Log object. -#' @name logs.show -NULL - -#' logs.destroy is a method defined in Arvados class. -#' -#' @usage arv$logs.destroy(uuid) -#' @param uuid -#' @return Log object. -#' @name logs.destroy -NULL - -#' traits.get is a method defined in Arvados class. -#' -#' @usage arv$traits.get(uuid) -#' @param uuid The UUID of the Trait in question. -#' @return Trait object. -#' @name traits.get -NULL - -#' traits.index is a method defined in Arvados class. -#' -#' @usage arv$traits.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return TraitList object. -#' @name traits.index -NULL - -#' traits.create is a method defined in Arvados class. -#' -#' @usage arv$traits.create(trait, ensure_unique_name = "false") -#' @param trait Trait object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Trait object. -#' @name traits.create -NULL - -#' traits.update is a method defined in Arvados class. -#' -#' @usage arv$traits.update(trait, uuid) -#' @param trait Trait object. -#' @param uuid The UUID of the Trait in question. -#' @return Trait object. -#' @name traits.update -NULL - -#' traits.delete is a method defined in Arvados class. -#' -#' @usage arv$traits.delete(uuid) -#' @param uuid The UUID of the Trait in question. -#' @return Trait object. -#' @name traits.delete -NULL - -#' traits.list is a method defined in Arvados class. -#' -#' @usage arv$traits.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return TraitList object. -#' @name traits.list -NULL - -#' traits.show is a method defined in Arvados class. -#' -#' @usage arv$traits.show(uuid) -#' @param uuid -#' @return Trait object. -#' @name traits.show -NULL - -#' traits.destroy is a method defined in Arvados class. -#' -#' @usage arv$traits.destroy(uuid) -#' @param uuid -#' @return Trait object. -#' @name traits.destroy -NULL - -#' virtual_machines.get is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.get(uuid) -#' @param uuid The UUID of the VirtualMachine in question. -#' @return VirtualMachine object. -#' @name virtual_machines.get -NULL - -#' virtual_machines.index is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return VirtualMachineList object. -#' @name virtual_machines.index -NULL - -#' virtual_machines.create is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.create(virtualmachine, -#' ensure_unique_name = "false") -#' @param virtualMachine VirtualMachine object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return VirtualMachine object. -#' @name virtual_machines.create -NULL - -#' virtual_machines.update is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.update(virtualmachine, -#' uuid) -#' @param virtualMachine VirtualMachine object. -#' @param uuid The UUID of the VirtualMachine in question. -#' @return VirtualMachine object. -#' @name virtual_machines.update -NULL - -#' virtual_machines.delete is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.delete(uuid) -#' @param uuid The UUID of the VirtualMachine in question. -#' @return VirtualMachine object. -#' @name virtual_machines.delete -NULL - -#' virtual_machines.logins is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.logins(uuid) -#' @param uuid -#' @return VirtualMachine object. -#' @name virtual_machines.logins -NULL - -#' virtual_machines.get_all_logins is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.get_all_logins(NULL) -#' @return VirtualMachine object. -#' @name virtual_machines.get_all_logins -NULL - -#' virtual_machines.list is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return VirtualMachineList object. -#' @name virtual_machines.list -NULL - -#' virtual_machines.show is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.show(uuid) -#' @param uuid -#' @return VirtualMachine object. -#' @name virtual_machines.show -NULL - -#' virtual_machines.destroy is a method defined in Arvados class. -#' -#' @usage arv$virtual_machines.destroy(uuid) -#' @param uuid -#' @return VirtualMachine object. -#' @name virtual_machines.destroy -NULL - -#' workflows.get is a method defined in Arvados class. -#' -#' @usage arv$workflows.get(uuid) -#' @param uuid The UUID of the Workflow in question. -#' @return Workflow object. -#' @name workflows.get -NULL - -#' workflows.index is a method defined in Arvados class. -#' -#' @usage arv$workflows.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return WorkflowList object. -#' @name workflows.index -NULL - -#' workflows.create is a method defined in Arvados class. -#' -#' @usage arv$workflows.create(workflow, -#' ensure_unique_name = "false") -#' @param workflow Workflow object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Workflow object. -#' @name workflows.create -NULL - -#' workflows.update is a method defined in Arvados class. -#' -#' @usage arv$workflows.update(workflow, -#' uuid) -#' @param workflow Workflow object. -#' @param uuid The UUID of the Workflow in question. -#' @return Workflow object. -#' @name workflows.update -NULL - -#' workflows.delete is a method defined in Arvados class. -#' -#' @usage arv$workflows.delete(uuid) -#' @param uuid The UUID of the Workflow in question. -#' @return Workflow object. -#' @name workflows.delete -NULL - -#' workflows.list is a method defined in Arvados class. -#' -#' @usage arv$workflows.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return WorkflowList object. -#' @name workflows.list -NULL - -#' workflows.show is a method defined in Arvados class. -#' -#' @usage arv$workflows.show(uuid) -#' @param uuid -#' @return Workflow object. -#' @name workflows.show -NULL - -#' workflows.destroy is a method defined in Arvados class. -#' -#' @usage arv$workflows.destroy(uuid) -#' @param uuid -#' @return Workflow object. -#' @name workflows.destroy -NULL - -#' groups.get is a method defined in Arvados class. -#' -#' @usage arv$groups.get(uuid) -#' @param uuid The UUID of the Group in question. -#' @return Group object. -#' @name groups.get -NULL - -#' groups.index is a method defined in Arvados class. -#' -#' @usage arv$groups.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact", include_trash = NULL) -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @param include_trash Include items whose is_trashed attribute is true. -#' @return GroupList object. -#' @name groups.index -NULL - -#' groups.create is a method defined in Arvados class. -#' -#' @usage arv$groups.create(group, ensure_unique_name = "false") -#' @param group Group object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return Group object. -#' @name groups.create -NULL - -#' groups.update is a method defined in Arvados class. -#' -#' @usage arv$groups.update(group, uuid) -#' @param group Group object. -#' @param uuid The UUID of the Group in question. -#' @return Group object. -#' @name groups.update -NULL - -#' groups.delete is a method defined in Arvados class. -#' -#' @usage arv$groups.delete(uuid) -#' @param uuid The UUID of the Group in question. -#' @return Group object. -#' @name groups.delete -NULL - -#' groups.contents is a method defined in Arvados class. -#' -#' @usage arv$groups.contents(filters = NULL, -#' where = NULL, order = NULL, distinct = NULL, -#' limit = "100", offset = "0", count = "exact", -#' include_trash = NULL, uuid = NULL, recursive = NULL) -#' @param filters -#' @param where -#' @param order -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @param include_trash Include items whose is_trashed attribute is true. -#' @param uuid -#' @param recursive Include contents from child groups recursively. -#' @return Group object. -#' @name groups.contents -NULL - -#' groups.trash is a method defined in Arvados class. -#' -#' @usage arv$groups.trash(uuid) -#' @param uuid -#' @return Group object. -#' @name groups.trash -NULL - -#' groups.untrash is a method defined in Arvados class. -#' -#' @usage arv$groups.untrash(uuid) -#' @param uuid -#' @return Group object. -#' @name groups.untrash -NULL - -#' groups.list is a method defined in Arvados class. -#' -#' @usage arv$groups.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact", include_trash = NULL) -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @param include_trash Include items whose is_trashed attribute is true. -#' @return GroupList object. -#' @name groups.list -NULL - -#' groups.show is a method defined in Arvados class. -#' -#' @usage arv$groups.show(uuid) -#' @param uuid -#' @return Group object. -#' @name groups.show -NULL - -#' groups.destroy is a method defined in Arvados class. -#' -#' @usage arv$groups.destroy(uuid) -#' @param uuid -#' @return Group object. -#' @name groups.destroy -NULL - -#' user_agreements.get is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.get(uuid) -#' @param uuid The UUID of the UserAgreement in question. -#' @return UserAgreement object. -#' @name user_agreements.get -NULL - -#' user_agreements.index is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.index(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return UserAgreementList object. -#' @name user_agreements.index -NULL - -#' user_agreements.create is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.create(useragreement, -#' ensure_unique_name = "false") -#' @param userAgreement UserAgreement object. -#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision. -#' @return UserAgreement object. -#' @name user_agreements.create -NULL - -#' user_agreements.update is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.update(useragreement, -#' uuid) -#' @param userAgreement UserAgreement object. -#' @param uuid The UUID of the UserAgreement in question. -#' @return UserAgreement object. -#' @name user_agreements.update -NULL - -#' user_agreements.delete is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.delete(uuid) -#' @param uuid The UUID of the UserAgreement in question. -#' @return UserAgreement object. -#' @name user_agreements.delete -NULL - -#' user_agreements.signatures is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.signatures(NULL) -#' @return UserAgreement object. -#' @name user_agreements.signatures -NULL - -#' user_agreements.sign is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.sign(NULL) -#' @return UserAgreement object. -#' @name user_agreements.sign -NULL - -#' user_agreements.list is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.list(filters = NULL, -#' where = NULL, order = NULL, select = NULL, -#' distinct = NULL, limit = "100", offset = "0", -#' count = "exact") -#' @param filters -#' @param where -#' @param order -#' @param select -#' @param distinct -#' @param limit -#' @param offset -#' @param count -#' @return UserAgreementList object. -#' @name user_agreements.list -NULL - -#' user_agreements.new is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.new(NULL) -#' @return UserAgreement object. -#' @name user_agreements.new -NULL - -#' user_agreements.show is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.show(uuid) -#' @param uuid -#' @return UserAgreement object. -#' @name user_agreements.show -NULL - -#' user_agreements.destroy is a method defined in Arvados class. -#' -#' @usage arv$user_agreements.destroy(uuid) -#' @param uuid -#' @return UserAgreement object. -#' @name user_agreements.destroy -NULL - -#' @export -Arvados <- R6::R6Class( - - "Arvados", - - public = list( - - initialize = function(authToken = NULL, hostName = NULL, numRetries = 0) - { - if(!is.null(hostName)) - Sys.setenv(ARVADOS_API_HOST = hostName) - - if(!is.null(authToken)) - Sys.setenv(ARVADOS_API_TOKEN = authToken) - - hostName <- Sys.getenv("ARVADOS_API_HOST") - token <- Sys.getenv("ARVADOS_API_TOKEN") - - if(hostName == "" | token == "") - stop(paste("Please provide host name and authentification token", - "or set ARVADOS_API_HOST and ARVADOS_API_TOKEN", - "environment variables.")) - - private$token <- token - private$host <- paste0("https://", hostName, "/arvados/v1/") - private$numRetries <- numRetries - private$REST <- RESTService$new(token, hostName, - HttpRequest$new(), HttpParser$new(), - numRetries) - - }, - - project.get = function(uuid) - { - self$groups.get(uuid) - }, - - project.create = function(group, ensure_unique_name = "false") - { - group <- c("group_class" = "project", group) - self$groups.create(group, ensure_unique_name) - }, - - project.update = function(group, uuid) - { - group <- c("group_class" = "project", group) - self$groups.update(group, uuid) - }, - - project.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact", - include_trash = NULL) - { - filters[[length(filters) + 1]] <- list("group_class", "=", "project") - self$groups.list(filters, where, order, select, distinct, - limit, offset, count, include_trash) - }, - - project.delete = function(uuid) - { - self$groups.delete(uuid) - }, - - users.get = function(uuid) - { - endPoint <- stringr::str_interp("users/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("users") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.create = function(user, ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("users") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(user) > 0) - body <- jsonlite::toJSON(list(user = user), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.update = function(user, uuid) - { - endPoint <- stringr::str_interp("users/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(user) > 0) - body <- jsonlite::toJSON(list(user = user), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.delete = function(uuid) - { - endPoint <- stringr::str_interp("users/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.current = function() - { - endPoint <- stringr::str_interp("users/current") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.system = function() - { - endPoint <- stringr::str_interp("users/system") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.activate = function(uuid) - { - endPoint <- stringr::str_interp("users/${uuid}/activate") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.setup = function(user = NULL, openid_prefix = NULL, - repo_name = NULL, vm_uuid = NULL, send_notification_email = "false") - { - endPoint <- stringr::str_interp("users/setup") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(user = user, openid_prefix = openid_prefix, - repo_name = repo_name, vm_uuid = vm_uuid, - send_notification_email = send_notification_email) - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.unsetup = function(uuid) - { - endPoint <- stringr::str_interp("users/${uuid}/unsetup") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.update_uuid = function(uuid, new_uuid) - { - endPoint <- stringr::str_interp("users/${uuid}/update_uuid") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(new_uuid = new_uuid) - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("users") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.show = function(uuid) - { - endPoint <- stringr::str_interp("users/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - users.destroy = function(uuid) - { - endPoint <- stringr::str_interp("users/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.get = function(uuid) - { - endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("api_client_authorizations") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.create = function(apiclientauthorization, - ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("api_client_authorizations") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(apiclientauthorization) > 0) - body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.update = function(apiclientauthorization, uuid) - { - endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(apiclientauthorization) > 0) - body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.delete = function(uuid) - { - endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.create_system_auth = function(api_client_id = NULL, scopes = NULL) - { - endPoint <- stringr::str_interp("api_client_authorizations/create_system_auth") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(api_client_id = api_client_id, - scopes = scopes) - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.current = function() - { - endPoint <- stringr::str_interp("api_client_authorizations/current") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("api_client_authorizations") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.show = function(uuid) - { - endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_client_authorizations.destroy = function(uuid) - { - endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.get = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("containers") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.create = function(container, ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("containers") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(container) > 0) - body <- jsonlite::toJSON(list(container = container), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.update = function(container, uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(container) > 0) - body <- jsonlite::toJSON(list(container = container), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.delete = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.auth = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}/auth") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.lock = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}/lock") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.unlock = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}/unlock") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.secret_mounts = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}/secret_mounts") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.current = function() - { - endPoint <- stringr::str_interp("containers/current") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("containers") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.show = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - containers.destroy = function(uuid) - { - endPoint <- stringr::str_interp("containers/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.get = function(uuid) - { - endPoint <- stringr::str_interp("api_clients/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("api_clients") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.create = function(apiclient, ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("api_clients") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(apiclient) > 0) - body <- jsonlite::toJSON(list(apiclient = apiclient), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.update = function(apiclient, uuid) - { - endPoint <- stringr::str_interp("api_clients/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(apiclient) > 0) - body <- jsonlite::toJSON(list(apiclient = apiclient), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.delete = function(uuid) - { - endPoint <- stringr::str_interp("api_clients/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("api_clients") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.show = function(uuid) - { - endPoint <- stringr::str_interp("api_clients/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - api_clients.destroy = function(uuid) - { - endPoint <- stringr::str_interp("api_clients/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.get = function(uuid) - { - endPoint <- stringr::str_interp("authorized_keys/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("authorized_keys") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.create = function(authorizedkey, - ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("authorized_keys") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(authorizedkey) > 0) - body <- jsonlite::toJSON(list(authorizedkey = authorizedkey), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.update = function(authorizedkey, uuid) - { - endPoint <- stringr::str_interp("authorized_keys/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(authorizedkey) > 0) - body <- jsonlite::toJSON(list(authorizedkey = authorizedkey), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.delete = function(uuid) - { - endPoint <- stringr::str_interp("authorized_keys/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("authorized_keys") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.show = function(uuid) - { - endPoint <- stringr::str_interp("authorized_keys/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - authorized_keys.destroy = function(uuid) - { - endPoint <- stringr::str_interp("authorized_keys/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.get = function(uuid) - { - endPoint <- stringr::str_interp("container_requests/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("container_requests") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.create = function(containerrequest, - ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("container_requests") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(containerrequest) > 0) - body <- jsonlite::toJSON(list(containerrequest = containerrequest), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.update = function(containerrequest, uuid) - { - endPoint <- stringr::str_interp("container_requests/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(containerrequest) > 0) - body <- jsonlite::toJSON(list(containerrequest = containerrequest), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.delete = function(uuid) - { - endPoint <- stringr::str_interp("container_requests/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("container_requests") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.show = function(uuid) - { - endPoint <- stringr::str_interp("container_requests/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - container_requests.destroy = function(uuid) - { - endPoint <- stringr::str_interp("container_requests/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.get = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact", include_trash = NULL) - { - endPoint <- stringr::str_interp("collections") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count, - include_trash = include_trash) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.create = function(collection, ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("collections") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(collection) > 0) - body <- jsonlite::toJSON(list(collection = collection), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.update = function(collection, uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(collection) > 0) - body <- jsonlite::toJSON(list(collection = collection), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.delete = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.provenance = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}/provenance") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.used_by = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}/used_by") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.trash = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}/trash") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.untrash = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}/untrash") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact", include_trash = NULL) - { - endPoint <- stringr::str_interp("collections") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count, - include_trash = include_trash) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.show = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - collections.destroy = function(uuid) - { - endPoint <- stringr::str_interp("collections/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.get = function(uuid) - { - endPoint <- stringr::str_interp("humans/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("humans") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.create = function(human, ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("humans") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(human) > 0) - body <- jsonlite::toJSON(list(human = human), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.update = function(human, uuid) - { - endPoint <- stringr::str_interp("humans/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(human) > 0) - body <- jsonlite::toJSON(list(human = human), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.delete = function(uuid) - { - endPoint <- stringr::str_interp("humans/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("humans") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.show = function(uuid) - { - endPoint <- stringr::str_interp("humans/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - humans.destroy = function(uuid) - { - endPoint <- stringr::str_interp("humans/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.get = function(uuid) - { - endPoint <- stringr::str_interp("job_tasks/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("job_tasks") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.create = function(jobtask, ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("job_tasks") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(jobtask) > 0) - body <- jsonlite::toJSON(list(jobtask = jobtask), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.update = function(jobtask, uuid) - { - endPoint <- stringr::str_interp("job_tasks/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(jobtask) > 0) - body <- jsonlite::toJSON(list(jobtask = jobtask), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.delete = function(uuid) - { - endPoint <- stringr::str_interp("job_tasks/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("job_tasks") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.show = function(uuid) - { - endPoint <- stringr::str_interp("job_tasks/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - job_tasks.destroy = function(uuid) - { - endPoint <- stringr::str_interp("job_tasks/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.get = function(uuid) - { - endPoint <- stringr::str_interp("links/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("links") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.create = function(link, ensure_unique_name = "false") - { - endPoint <- stringr::str_interp("links") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(link) > 0) - body <- jsonlite::toJSON(list(link = link), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.update = function(link, uuid) - { - endPoint <- stringr::str_interp("links/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(link) > 0) - body <- jsonlite::toJSON(list(link = link), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.delete = function(uuid) - { - endPoint <- stringr::str_interp("links/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("links") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.show = function(uuid) - { - endPoint <- stringr::str_interp("links/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.destroy = function(uuid) - { - endPoint <- stringr::str_interp("links/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - links.get_permissions = function(uuid) - { - endPoint <- stringr::str_interp("permissions/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - - jobs.get = function(uuid) - { - endPoint <- stringr::str_interp("jobs/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, + "Arvados", - jobs.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("jobs") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, + public = list( - jobs.create = function(job, ensure_unique_name = "false", - find_or_create = "false", filters = NULL, - minimum_script_version = NULL, exclude_script_versions = NULL) + initialize = function(authToken = NULL, hostName = NULL, numRetries = 0) { - endPoint <- stringr::str_interp("jobs") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name, - find_or_create = find_or_create, filters = filters, - minimum_script_version = minimum_script_version, - exclude_script_versions = exclude_script_versions) - - if(length(job) > 0) - body <- jsonlite::toJSON(list(job = job), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, + if(!is.null(hostName)) + Sys.setenv(ARVADOS_API_HOST = hostName) - jobs.update = function(job, uuid) - { - endPoint <- stringr::str_interp("jobs/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(job) > 0) - body <- jsonlite::toJSON(list(job = job), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, + if(!is.null(authToken)) + Sys.setenv(ARVADOS_API_TOKEN = authToken) - jobs.delete = function(uuid) - { - endPoint <- stringr::str_interp("jobs/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, + hostName <- Sys.getenv("ARVADOS_API_HOST") + token <- Sys.getenv("ARVADOS_API_TOKEN") - jobs.queue = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("jobs/queue") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, + if(hostName == "" | token == "") + stop(paste("Please provide host name and authentification token", + "or set ARVADOS_API_HOST and ARVADOS_API_TOKEN", + "environment variables.")) + + private$token <- token + private$host <- paste0("https://", hostName, "/arvados/v1/") + private$numRetries <- numRetries + private$REST <- RESTService$new(token, hostName, + HttpRequest$new(), HttpParser$new(), + numRetries) - jobs.queue_size = function() - { - endPoint <- stringr::str_interp("jobs/queue_size") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource }, - jobs.cancel = function(uuid) + projects.get = function(uuid) { - endPoint <- stringr::str_interp("jobs/${uuid}/cancel") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource + self$groups.get(uuid) }, - jobs.lock = function(uuid) + projects.create = function(group, ensure_unique_name = "false") { - endPoint <- stringr::str_interp("jobs/${uuid}/lock") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource + group <- c("group_class" = "project", group) + self$groups.create(group, ensure_unique_name) }, - jobs.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") + projects.update = function(group, uuid) { - endPoint <- stringr::str_interp("jobs") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource + group <- c("group_class" = "project", group) + self$groups.update(group, uuid) }, - jobs.show = function(uuid) + projects.list = function(filters = NULL, where = NULL, + order = NULL, select = NULL, distinct = NULL, + limit = "100", offset = "0", count = "exact", + include_trash = NULL) { - endPoint <- stringr::str_interp("jobs/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource + filters[[length(filters) + 1]] <- list("group_class", "=", "project") + self$groups.list(filters, where, order, select, distinct, + limit, offset, count, include_trash) }, - jobs.destroy = function(uuid) + projects.delete = function(uuid) { - endPoint <- stringr::str_interp("jobs/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource + self$groups.delete(uuid) }, - keep_disks.get = function(uuid) + api_clients.get = function(uuid) { - endPoint <- stringr::str_interp("keep_disks/${uuid}") + endPoint <- stringr::str_interp("api_clients/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - keep_disks.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("keep_disks") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_disks.create = function(keepdisk, ensure_unique_name = "false") + api_clients.create = function(apiclient, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("keep_disks") + endPoint <- stringr::str_interp("api_clients") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(keepdisk) > 0) - body <- jsonlite::toJSON(list(keepdisk = keepdisk), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(apiclient) > 0) + body <- jsonlite::toJSON(list(apiclient = apiclient), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_disks.update = function(keepdisk, uuid) + api_clients.update = function(apiclient, uuid) { - endPoint <- stringr::str_interp("keep_disks/${uuid}") + endPoint <- stringr::str_interp("api_clients/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - if(length(keepdisk) > 0) - body <- jsonlite::toJSON(list(keepdisk = keepdisk), + + if(length(apiclient) > 0) + body <- jsonlite::toJSON(list(apiclient = apiclient), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_disks.delete = function(uuid) + api_clients.delete = function(uuid) { - endPoint <- stringr::str_interp("keep_disks/${uuid}") + endPoint <- stringr::str_interp("api_clients/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - keep_disks.ping = function(uuid = NULL, ping_secret, - node_uuid = NULL, filesystem_uuid = NULL, - service_host = NULL, service_port, service_ssl_flag) - { - endPoint <- stringr::str_interp("keep_disks/ping") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(uuid = uuid, ping_secret = ping_secret, - node_uuid = node_uuid, filesystem_uuid = filesystem_uuid, - service_host = service_host, service_port = service_port, - service_ssl_flag = service_ssl_flag) - - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_disks.list = function(filters = NULL, + api_clients.list = function(filters = NULL, where = NULL, order = NULL, select = NULL, distinct = NULL, limit = "100", offset = "0", - count = "exact") + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("keep_disks") + endPoint <- stringr::str_interp("api_clients") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- list(filters = filters, where = where, order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_disks.show = function(uuid) + api_client_authorizations.get = function(uuid) { - endPoint <- stringr::str_interp("keep_disks/${uuid}") + endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_disks.destroy = function(uuid) + api_client_authorizations.create = function(apiclientauthorization, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("keep_disks/${uuid}") + endPoint <- stringr::str_interp("api_client_authorizations") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(apiclientauthorization) > 0) + body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.get = function(uuid) + api_client_authorizations.update = function(apiclientauthorization, uuid) { - endPoint <- stringr::str_interp("keep_services/${uuid}") + endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + if(length(apiclientauthorization) > 0) + body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + api_client_authorizations.delete = function(uuid) { - endPoint <- stringr::str_interp("keep_services") + endPoint <- stringr::str_interp("api_client_authorizations/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.create = function(keepservice, - ensure_unique_name = "false") + api_client_authorizations.create_system_auth = function(api_client_id = NULL, scopes = NULL) { - endPoint <- stringr::str_interp("keep_services") + endPoint <- stringr::str_interp("api_client_authorizations/create_system_auth") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(keepservice) > 0) - body <- jsonlite::toJSON(list(keepservice = keepservice), - auto_unbox = TRUE) - else - body <- NULL - + queryArgs <- list(api_client_id = api_client_id, + scopes = scopes) + + body <- NULL + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.update = function(keepservice, uuid) + api_client_authorizations.current = function() { - endPoint <- stringr::str_interp("keep_services/${uuid}") + endPoint <- stringr::str_interp("api_client_authorizations/current") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - if(length(keepservice) > 0) - body <- jsonlite::toJSON(list(keepservice = keepservice), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, + + body <- NULL + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.delete = function(uuid) + api_client_authorizations.list = function(filters = NULL, + where = NULL, order = NULL, select = NULL, + distinct = NULL, limit = "100", offset = "0", + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("keep_services/${uuid}") + endPoint <- stringr::str_interp("api_client_authorizations") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.accessible = function() + authorized_keys.get = function(uuid) { - endPoint <- stringr::str_interp("keep_services/accessible") + endPoint <- stringr::str_interp("authorized_keys/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + authorized_keys.create = function(authorizedkey, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("keep_services") + endPoint <- stringr::str_interp("authorized_keys") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(authorizedkey) > 0) + body <- jsonlite::toJSON(list(authorizedkey = authorizedkey), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.show = function(uuid) + authorized_keys.update = function(authorizedkey, uuid) { - endPoint <- stringr::str_interp("keep_services/${uuid}") + endPoint <- stringr::str_interp("authorized_keys/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + if(length(authorizedkey) > 0) + body <- jsonlite::toJSON(list(authorizedkey = authorizedkey), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - keep_services.destroy = function(uuid) + authorized_keys.delete = function(uuid) { - endPoint <- stringr::str_interp("keep_services/${uuid}") + endPoint <- stringr::str_interp("authorized_keys/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.get = function(uuid) + authorized_keys.list = function(filters = NULL, + where = NULL, order = NULL, select = NULL, + distinct = NULL, limit = "100", offset = "0", + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("pipeline_templates/${uuid}") + endPoint <- stringr::str_interp("authorized_keys") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + collections.get = function(uuid) { - endPoint <- stringr::str_interp("pipeline_templates") + endPoint <- stringr::str_interp("collections/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.create = function(pipelinetemplate, - ensure_unique_name = "false") + collections.create = function(collection, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("pipeline_templates") + endPoint <- stringr::str_interp("collections") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(pipelinetemplate) > 0) - body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(collection) > 0) + body <- jsonlite::toJSON(list(collection = collection), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.update = function(pipelinetemplate, uuid) + collections.update = function(collection, uuid) { - endPoint <- stringr::str_interp("pipeline_templates/${uuid}") + endPoint <- stringr::str_interp("collections/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - if(length(pipelinetemplate) > 0) - body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate), + + if(length(collection) > 0) + body <- jsonlite::toJSON(list(collection = collection), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.delete = function(uuid) + collections.delete = function(uuid) { - endPoint <- stringr::str_interp("pipeline_templates/${uuid}") + endPoint <- stringr::str_interp("collections/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + collections.provenance = function(uuid) { - endPoint <- stringr::str_interp("pipeline_templates") + endPoint <- stringr::str_interp("collections/${uuid}/provenance") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.show = function(uuid) + collections.used_by = function(uuid) { - endPoint <- stringr::str_interp("pipeline_templates/${uuid}") + endPoint <- stringr::str_interp("collections/${uuid}/used_by") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_templates.destroy = function(uuid) + collections.trash = function(uuid) { - endPoint <- stringr::str_interp("pipeline_templates/${uuid}") + endPoint <- stringr::str_interp("collections/${uuid}/trash") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.get = function(uuid) + collections.untrash = function(uuid) { - endPoint <- stringr::str_interp("pipeline_instances/${uuid}") + endPoint <- stringr::str_interp("collections/${uuid}/untrash") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.index = function(filters = NULL, + collections.list = function(filters = NULL, where = NULL, order = NULL, select = NULL, distinct = NULL, limit = "100", offset = "0", - count = "exact") + count = "exact", cluster_id = NULL, bypass_federation = NULL, + include_trash = NULL, include_old_versions = NULL) { - endPoint <- stringr::str_interp("pipeline_instances") + endPoint <- stringr::str_interp("collections") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- list(filters = filters, where = where, order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation, + include_trash = include_trash, include_old_versions = include_old_versions) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.create = function(pipelineinstance, - ensure_unique_name = "false") + containers.get = function(uuid) { - endPoint <- stringr::str_interp("pipeline_instances") + endPoint <- stringr::str_interp("containers/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(pipelineinstance) > 0) - body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, + queryArgs <- NULL + + body <- NULL + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.update = function(pipelineinstance, uuid) + containers.create = function(container, ensure_unique_name = "false", + cluster_id = NULL) { - endPoint <- stringr::str_interp("pipeline_instances/${uuid}") + endPoint <- stringr::str_interp("containers") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(pipelineinstance) > 0) - body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(container) > 0) + body <- jsonlite::toJSON(list(container = container), auto_unbox = TRUE) else body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.delete = function(uuid) + containers.update = function(container, uuid) { - endPoint <- stringr::str_interp("pipeline_instances/${uuid}") + endPoint <- stringr::str_interp("containers/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + if(length(container) > 0) + body <- jsonlite::toJSON(list(container = container), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.cancel = function(uuid) + containers.delete = function(uuid) { - endPoint <- stringr::str_interp("pipeline_instances/${uuid}/cancel") + endPoint <- stringr::str_interp("containers/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, + + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + containers.auth = function(uuid) { - endPoint <- stringr::str_interp("pipeline_instances") + endPoint <- stringr::str_interp("containers/${uuid}/auth") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.show = function(uuid) + containers.lock = function(uuid) { - endPoint <- stringr::str_interp("pipeline_instances/${uuid}") + endPoint <- stringr::str_interp("containers/${uuid}/lock") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - pipeline_instances.destroy = function(uuid) + containers.unlock = function(uuid) { - endPoint <- stringr::str_interp("pipeline_instances/${uuid}") + endPoint <- stringr::str_interp("containers/${uuid}/unlock") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - nodes.get = function(uuid) + containers.secret_mounts = function(uuid) { - endPoint <- stringr::str_interp("nodes/${uuid}") + endPoint <- stringr::str_interp("containers/${uuid}/secret_mounts") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - nodes.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") + containers.current = function() { - endPoint <- stringr::str_interp("nodes") + endPoint <- stringr::str_interp("containers/current") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - nodes.create = function(node, ensure_unique_name = "false", - assign_slot = NULL) - { - endPoint <- stringr::str_interp("nodes") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name, - assign_slot = assign_slot) - - if(length(node) > 0) - body <- jsonlite::toJSON(list(node = node), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - nodes.update = function(node, uuid, assign_slot = NULL) + containers.list = function(filters = NULL, + where = NULL, order = NULL, select = NULL, + distinct = NULL, limit = "100", offset = "0", + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("nodes/${uuid}") + endPoint <- stringr::str_interp("containers") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(assign_slot = assign_slot) - - if(length(node) > 0) - body <- jsonlite::toJSON(list(node = node), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + + body <- NULL + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - nodes.delete = function(uuid) + container_requests.get = function(uuid) { - endPoint <- stringr::str_interp("nodes/${uuid}") + endPoint <- stringr::str_interp("container_requests/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - nodes.ping = function(uuid, ping_secret) + container_requests.create = function(containerrequest, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("nodes/${uuid}/ping") + endPoint <- stringr::str_interp("container_requests") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ping_secret = ping_secret) - - body <- NULL - + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(containerrequest) > 0) + body <- jsonlite::toJSON(list(containerrequest = containerrequest), + auto_unbox = TRUE) + else + body <- NULL + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - nodes.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("nodes") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - nodes.show = function(uuid) + container_requests.update = function(containerrequest, uuid) { - endPoint <- stringr::str_interp("nodes/${uuid}") + endPoint <- stringr::str_interp("container_requests/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + if(length(containerrequest) > 0) + body <- jsonlite::toJSON(list(containerrequest = containerrequest), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - nodes.destroy = function(uuid) + container_requests.delete = function(uuid) { - endPoint <- stringr::str_interp("nodes/${uuid}") + endPoint <- stringr::str_interp("container_requests/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.get = function(uuid) + container_requests.list = function(filters = NULL, + where = NULL, order = NULL, select = NULL, + distinct = NULL, limit = "100", offset = "0", + count = "exact", cluster_id = NULL, bypass_federation = NULL, + include_trash = NULL) { - endPoint <- stringr::str_interp("repositories/${uuid}") + endPoint <- stringr::str_interp("container_requests") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation, + include_trash = include_trash) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + groups.get = function(uuid) { - endPoint <- stringr::str_interp("repositories") + endPoint <- stringr::str_interp("groups/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.create = function(repository, ensure_unique_name = "false") + groups.create = function(group, ensure_unique_name = "false", + cluster_id = NULL, async = "false") { - endPoint <- stringr::str_interp("repositories") + endPoint <- stringr::str_interp("groups") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(repository) > 0) - body <- jsonlite::toJSON(list(repository = repository), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id, async = async) + + if(length(group) > 0) + body <- jsonlite::toJSON(list(group = group), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.update = function(repository, uuid) + groups.update = function(group, uuid, async = "false") { - endPoint <- stringr::str_interp("repositories/${uuid}") + endPoint <- stringr::str_interp("groups/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(repository) > 0) - body <- jsonlite::toJSON(list(repository = repository), + queryArgs <- list(async = async) + + if(length(group) > 0) + body <- jsonlite::toJSON(list(group = group), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.delete = function(uuid) + groups.delete = function(uuid) { - endPoint <- stringr::str_interp("repositories/${uuid}") + endPoint <- stringr::str_interp("groups/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.get_all_permissions = function() + groups.contents = function(filters = NULL, + where = NULL, order = NULL, distinct = NULL, + limit = "100", offset = "0", count = "exact", + cluster_id = NULL, bypass_federation = NULL, + include_trash = NULL, uuid = NULL, recursive = NULL, + include = NULL) { - endPoint <- stringr::str_interp("repositories/get_all_permissions") + endPoint <- stringr::str_interp("groups/contents") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, distinct = distinct, limit = limit, + offset = offset, count = count, cluster_id = cluster_id, + bypass_federation = bypass_federation, include_trash = include_trash, + uuid = uuid, recursive = recursive, include = include) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.list = function(filters = NULL, + groups.shared = function(filters = NULL, where = NULL, order = NULL, select = NULL, distinct = NULL, limit = "100", offset = "0", - count = "exact") + count = "exact", cluster_id = NULL, bypass_federation = NULL, + include_trash = NULL, include = NULL) { - endPoint <- stringr::str_interp("repositories") + endPoint <- stringr::str_interp("groups/shared") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- list(filters = filters, where = where, order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation, + include_trash = include_trash, include = include) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.show = function(uuid) + groups.trash = function(uuid) { - endPoint <- stringr::str_interp("repositories/${uuid}") + endPoint <- stringr::str_interp("groups/${uuid}/trash") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - repositories.destroy = function(uuid) + groups.untrash = function(uuid) { - endPoint <- stringr::str_interp("repositories/${uuid}") + endPoint <- stringr::str_interp("groups/${uuid}/untrash") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - specimens.get = function(uuid) + groups.list = function(filters = NULL, where = NULL, + order = NULL, select = NULL, distinct = NULL, + limit = "100", offset = "0", count = "exact", + cluster_id = NULL, bypass_federation = NULL, + include_trash = NULL) { - endPoint <- stringr::str_interp("specimens/${uuid}") + endPoint <- stringr::str_interp("groups") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation, + include_trash = include_trash) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - specimens.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + keep_services.get = function(uuid) { - endPoint <- stringr::str_interp("specimens") + endPoint <- stringr::str_interp("keep_services/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - specimens.create = function(specimen, ensure_unique_name = "false") + keep_services.create = function(keepservice, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("specimens") + endPoint <- stringr::str_interp("keep_services") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(specimen) > 0) - body <- jsonlite::toJSON(list(specimen = specimen), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(keepservice) > 0) + body <- jsonlite::toJSON(list(keepservice = keepservice), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - specimens.update = function(specimen, uuid) + keep_services.update = function(keepservice, uuid) { - endPoint <- stringr::str_interp("specimens/${uuid}") + endPoint <- stringr::str_interp("keep_services/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - if(length(specimen) > 0) - body <- jsonlite::toJSON(list(specimen = specimen), + + if(length(keepservice) > 0) + body <- jsonlite::toJSON(list(keepservice = keepservice), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - specimens.delete = function(uuid) + keep_services.delete = function(uuid) { - endPoint <- stringr::str_interp("specimens/${uuid}") + endPoint <- stringr::str_interp("keep_services/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - specimens.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("specimens") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - specimens.show = function(uuid) + keep_services.accessible = function() { - endPoint <- stringr::str_interp("specimens/${uuid}") + endPoint <- stringr::str_interp("keep_services/accessible") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - specimens.destroy = function(uuid) - { - endPoint <- stringr::str_interp("specimens/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - logs.get = function(uuid) + keep_services.list = function(filters = NULL, + where = NULL, order = NULL, select = NULL, + distinct = NULL, limit = "100", offset = "0", + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("logs/${uuid}") + endPoint <- stringr::str_interp("keep_services") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - logs.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") + links.get = function(uuid) { - endPoint <- stringr::str_interp("logs") + endPoint <- stringr::str_interp("links/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - logs.create = function(log, ensure_unique_name = "false") + links.create = function(link, ensure_unique_name = "false", + cluster_id = NULL) { - endPoint <- stringr::str_interp("logs") + endPoint <- stringr::str_interp("links") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(log) > 0) - body <- jsonlite::toJSON(list(log = log), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(link) > 0) + body <- jsonlite::toJSON(list(link = link), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - logs.update = function(log, uuid) + links.update = function(link, uuid) { - endPoint <- stringr::str_interp("logs/${uuid}") + endPoint <- stringr::str_interp("links/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - if(length(log) > 0) - body <- jsonlite::toJSON(list(log = log), + + if(length(link) > 0) + body <- jsonlite::toJSON(list(link = link), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - logs.delete = function(uuid) - { - endPoint <- stringr::str_interp("logs/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - - resource - }, - logs.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") - { - endPoint <- stringr::str_interp("logs") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - resource }, - logs.show = function(uuid) + links.delete = function(uuid) { - endPoint <- stringr::str_interp("logs/${uuid}") + endPoint <- stringr::str_interp("links/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - logs.destroy = function(uuid) + links.list = function(filters = NULL, where = NULL, + order = NULL, select = NULL, distinct = NULL, + limit = "100", offset = "0", count = "exact", + cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("logs/${uuid}") + endPoint <- stringr::str_interp("links") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - traits.get = function(uuid) + links.get_permissions = function(uuid) { - endPoint <- stringr::str_interp("traits/${uuid}") + endPoint <- stringr::str_interp("permissions/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - traits.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") + logs.get = function(uuid) { - endPoint <- stringr::str_interp("traits") + endPoint <- stringr::str_interp("logs/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - traits.create = function(trait, ensure_unique_name = "false") + logs.create = function(log, ensure_unique_name = "false", + cluster_id = NULL) { - endPoint <- stringr::str_interp("traits") + endPoint <- stringr::str_interp("logs") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(trait) > 0) - body <- jsonlite::toJSON(list(trait = trait), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(log) > 0) + body <- jsonlite::toJSON(list(log = log), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - traits.update = function(trait, uuid) + logs.update = function(log, uuid) { - endPoint <- stringr::str_interp("traits/${uuid}") + endPoint <- stringr::str_interp("logs/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - if(length(trait) > 0) - body <- jsonlite::toJSON(list(trait = trait), + + if(length(log) > 0) + body <- jsonlite::toJSON(list(log = log), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - traits.delete = function(uuid) + logs.delete = function(uuid) { - endPoint <- stringr::str_interp("traits/${uuid}") + endPoint <- stringr::str_interp("logs/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - traits.list = function(filters = NULL, where = NULL, + logs.list = function(filters = NULL, where = NULL, order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact") + limit = "100", offset = "0", count = "exact", + cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("traits") + endPoint <- stringr::str_interp("logs") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- list(filters = filters, where = where, order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) - traits.show = function(uuid) - { - endPoint <- stringr::str_interp("traits/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - traits.destroy = function(uuid) - { - endPoint <- stringr::str_interp("traits/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.get = function(uuid) + users.get = function(uuid) { - endPoint <- stringr::str_interp("virtual_machines/${uuid}") + endPoint <- stringr::str_interp("users/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - virtual_machines.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") - { - endPoint <- stringr::str_interp("virtual_machines") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.create = function(virtualmachine, - ensure_unique_name = "false") + users.create = function(user, ensure_unique_name = "false", + cluster_id = NULL) { - endPoint <- stringr::str_interp("virtual_machines") + endPoint <- stringr::str_interp("users") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(virtualmachine) > 0) - body <- jsonlite::toJSON(list(virtualmachine = virtualmachine), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(user) > 0) + body <- jsonlite::toJSON(list(user = user), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.update = function(virtualmachine, uuid) + users.update = function(user, uuid, bypass_federation = NULL) { - endPoint <- stringr::str_interp("virtual_machines/${uuid}") + endPoint <- stringr::str_interp("users/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(virtualmachine) > 0) - body <- jsonlite::toJSON(list(virtualmachine = virtualmachine), + queryArgs <- list(bypass_federation = bypass_federation) + + if(length(user) > 0) + body <- jsonlite::toJSON(list(user = user), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.delete = function(uuid) + users.delete = function(uuid) { - endPoint <- stringr::str_interp("virtual_machines/${uuid}") + endPoint <- stringr::str_interp("users/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.logins = function(uuid) + users.current = function() { - endPoint <- stringr::str_interp("virtual_machines/${uuid}/logins") + endPoint <- stringr::str_interp("users/current") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.get_all_logins = function() + users.system = function() { - endPoint <- stringr::str_interp("virtual_machines/get_all_logins") + endPoint <- stringr::str_interp("users/system") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + users.activate = function(uuid) { - endPoint <- stringr::str_interp("virtual_machines") + endPoint <- stringr::str_interp("users/${uuid}/activate") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + queryArgs <- NULL + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.show = function(uuid) + users.setup = function(uuid = NULL, user = NULL, + repo_name = NULL, vm_uuid = NULL, send_notification_email = "false") { - endPoint <- stringr::str_interp("virtual_machines/${uuid}") + endPoint <- stringr::str_interp("users/setup") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(uuid = uuid, user = user, + repo_name = repo_name, vm_uuid = vm_uuid, + send_notification_email = send_notification_email) + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - virtual_machines.destroy = function(uuid) + users.unsetup = function(uuid) { - endPoint <- stringr::str_interp("virtual_machines/${uuid}") + endPoint <- stringr::str_interp("users/${uuid}/unsetup") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - workflows.get = function(uuid) + users.merge = function(new_owner_uuid, new_user_token = NULL, + redirect_to_new_user = NULL, old_user_uuid = NULL, + new_user_uuid = NULL) { - endPoint <- stringr::str_interp("workflows/${uuid}") + endPoint <- stringr::str_interp("users/merge") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(new_owner_uuid = new_owner_uuid, + new_user_token = new_user_token, redirect_to_new_user = redirect_to_new_user, + old_user_uuid = old_user_uuid, new_user_uuid = new_user_uuid) + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - workflows.index = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + users.list = function(filters = NULL, where = NULL, + order = NULL, select = NULL, distinct = NULL, + limit = "100", offset = "0", count = "exact", + cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("workflows") + endPoint <- stringr::str_interp("users") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- list(filters = filters, where = where, order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - workflows.create = function(workflow, ensure_unique_name = "false") + repositories.get = function(uuid) { - endPoint <- stringr::str_interp("workflows") + endPoint <- stringr::str_interp("repositories/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(workflow) > 0) - body <- jsonlite::toJSON(list(workflow = workflow), - auto_unbox = TRUE) - else - body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, + queryArgs <- NULL + + body <- NULL + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - workflows.update = function(workflow, uuid) + repositories.create = function(repository, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("workflows/${uuid}") + endPoint <- stringr::str_interp("repositories") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - - if(length(workflow) > 0) - body <- jsonlite::toJSON(list(workflow = workflow), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(repository) > 0) + body <- jsonlite::toJSON(list(repository = repository), auto_unbox = TRUE) else body <- NULL - - response <- private$REST$http$exec("PUT", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - workflows.delete = function(uuid) - { - endPoint <- stringr::str_interp("workflows/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - workflows.list = function(filters = NULL, - where = NULL, order = NULL, select = NULL, - distinct = NULL, limit = "100", offset = "0", - count = "exact") + repositories.update = function(repository, uuid) { - endPoint <- stringr::str_interp("workflows") + endPoint <- stringr::str_interp("repositories/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + queryArgs <- NULL + + if(length(repository) > 0) + body <- jsonlite::toJSON(list(repository = repository), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - workflows.show = function(uuid) + repositories.delete = function(uuid) { - endPoint <- stringr::str_interp("workflows/${uuid}") + endPoint <- stringr::str_interp("repositories/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - workflows.destroy = function(uuid) + repositories.get_all_permissions = function() { - endPoint <- stringr::str_interp("workflows/${uuid}") + endPoint <- stringr::str_interp("repositories/get_all_permissions") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.get = function(uuid) + repositories.list = function(filters = NULL, + where = NULL, order = NULL, select = NULL, + distinct = NULL, limit = "100", offset = "0", + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("groups/${uuid}") + endPoint <- stringr::str_interp("repositories") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.index = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact", - include_trash = NULL) + virtual_machines.get = function(uuid) { - endPoint <- stringr::str_interp("groups") + endPoint <- stringr::str_interp("virtual_machines/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count, - include_trash = include_trash) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.create = function(group, ensure_unique_name = "false") + virtual_machines.create = function(virtualmachine, + ensure_unique_name = "false", cluster_id = NULL) { - endPoint <- stringr::str_interp("groups") + endPoint <- stringr::str_interp("virtual_machines") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - - if(length(group) > 0) - body <- jsonlite::toJSON(list(group = group), + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(virtualmachine) > 0) + body <- jsonlite::toJSON(list(virtualmachine = virtualmachine), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.update = function(group, uuid) + virtual_machines.update = function(virtualmachine, uuid) { - endPoint <- stringr::str_interp("groups/${uuid}") + endPoint <- stringr::str_interp("virtual_machines/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - if(length(group) > 0) - body <- jsonlite::toJSON(list(group = group), + + if(length(virtualmachine) > 0) + body <- jsonlite::toJSON(list(virtualmachine = virtualmachine), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.delete = function(uuid) + virtual_machines.delete = function(uuid) { - endPoint <- stringr::str_interp("groups/${uuid}") + endPoint <- stringr::str_interp("virtual_machines/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.contents = function(filters = NULL, - where = NULL, order = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact", - include_trash = NULL, uuid = NULL, recursive = NULL) + virtual_machines.logins = function(uuid) { - endPoint <- stringr::str_interp("groups/contents") + endPoint <- stringr::str_interp("virtual_machines/${uuid}/logins") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, distinct = distinct, limit = limit, - offset = offset, count = count, include_trash = include_trash, - uuid = uuid, recursive = recursive) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.trash = function(uuid) + virtual_machines.get_all_logins = function() { - endPoint <- stringr::str_interp("groups/${uuid}/trash") + endPoint <- stringr::str_interp("virtual_machines/get_all_logins") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.untrash = function(uuid) + virtual_machines.list = function(filters = NULL, + where = NULL, order = NULL, select = NULL, + distinct = NULL, limit = "100", offset = "0", + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("groups/${uuid}/untrash") + endPoint <- stringr::str_interp("virtual_machines") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - + queryArgs <- list(filters = filters, where = where, + order = order, select = select, distinct = distinct, + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - - response <- private$REST$http$exec("POST", url, headers, body, + + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.list = function(filters = NULL, where = NULL, - order = NULL, select = NULL, distinct = NULL, - limit = "100", offset = "0", count = "exact", - include_trash = NULL) + workflows.get = function(uuid) { - endPoint <- stringr::str_interp("groups") + endPoint <- stringr::str_interp("workflows/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(filters = filters, where = where, - order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count, - include_trash = include_trash) - + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.show = function(uuid) + workflows.create = function(workflow, ensure_unique_name = "false", + cluster_id = NULL) { - endPoint <- stringr::str_interp("groups/${uuid}") + endPoint <- stringr::str_interp("workflows") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + + if(length(workflow) > 0) + body <- jsonlite::toJSON(list(workflow = workflow), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - groups.destroy = function(uuid) + workflows.update = function(workflow, uuid) { - endPoint <- stringr::str_interp("groups/${uuid}") + endPoint <- stringr::str_interp("workflows/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, + + if(length(workflow) > 0) + body <- jsonlite::toJSON(list(workflow = workflow), + auto_unbox = TRUE) + else + body <- NULL + + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - user_agreements.get = function(uuid) + workflows.delete = function(uuid) { - endPoint <- stringr::str_interp("user_agreements/${uuid}") + endPoint <- stringr::str_interp("workflows/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - - response <- private$REST$http$exec("GET", url, headers, body, + + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - user_agreements.index = function(filters = NULL, + workflows.list = function(filters = NULL, where = NULL, order = NULL, select = NULL, distinct = NULL, limit = "100", offset = "0", - count = "exact") + count = "exact", cluster_id = NULL, bypass_federation = NULL) { - endPoint <- stringr::str_interp("user_agreements") + endPoint <- stringr::str_interp("workflows") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- list(filters = filters, where = where, order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + + body <- NULL + + response <- private$REST$http$exec("GET", url, headers, body, + queryArgs, private$numRetries) + resource <- private$REST$httpParser$parseJSONResponse(response) + + if(!is.null(resource$errors)) + stop(resource$errors) + + resource + }, + + user_agreements.get = function(uuid) + { + endPoint <- stringr::str_interp("user_agreements/${uuid}") + url <- paste0(private$host, endPoint) + headers <- list(Authorization = paste("Bearer", private$token), + "Content-Type" = "application/json") + queryArgs <- NULL + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, user_agreements.create = function(useragreement, - ensure_unique_name = "false") + ensure_unique_name = "false", cluster_id = NULL) { endPoint <- stringr::str_interp("user_agreements") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") - queryArgs <- list(ensure_unique_name = ensure_unique_name) - + queryArgs <- list(ensure_unique_name = ensure_unique_name, + cluster_id = cluster_id) + if(length(useragreement) > 0) - body <- jsonlite::toJSON(list(useragreement = useragreement), + body <- jsonlite::toJSON(list(useragreement = useragreement), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, @@ -7306,23 +3849,23 @@ Arvados <- R6::R6Class( { endPoint <- stringr::str_interp("user_agreements/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + if(length(useragreement) > 0) - body <- jsonlite::toJSON(list(useragreement = useragreement), + body <- jsonlite::toJSON(list(useragreement = useragreement), auto_unbox = TRUE) else body <- NULL - + response <- private$REST$http$exec("PUT", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, @@ -7330,19 +3873,19 @@ Arvados <- R6::R6Class( { endPoint <- stringr::str_interp("user_agreements/${uuid}") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("DELETE", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, @@ -7350,19 +3893,19 @@ Arvados <- R6::R6Class( { endPoint <- stringr::str_interp("user_agreements/signatures") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, @@ -7370,44 +3913,45 @@ Arvados <- R6::R6Class( { endPoint <- stringr::str_interp("user_agreements/sign") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("POST", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, user_agreements.list = function(filters = NULL, where = NULL, order = NULL, select = NULL, distinct = NULL, limit = "100", offset = "0", - count = "exact") + count = "exact", cluster_id = NULL, bypass_federation = NULL) { endPoint <- stringr::str_interp("user_agreements") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- list(filters = filters, where = where, order = order, select = select, distinct = distinct, - limit = limit, offset = offset, count = count) - + limit = limit, offset = offset, count = count, + cluster_id = cluster_id, bypass_federation = bypass_federation) + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, @@ -7415,59 +3959,39 @@ Arvados <- R6::R6Class( { endPoint <- stringr::str_interp("user_agreements/new") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - + if(!is.null(resource$errors)) stop(resource$errors) - + resource }, - user_agreements.show = function(uuid) + configs.get = function() { - endPoint <- stringr::str_interp("user_agreements/${uuid}") + endPoint <- stringr::str_interp("config") url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), + headers <- list(Authorization = paste("Bearer", private$token), "Content-Type" = "application/json") queryArgs <- NULL - + body <- NULL - + response <- private$REST$http$exec("GET", url, headers, body, queryArgs, private$numRetries) resource <- private$REST$httpParser$parseJSONResponse(response) - - if(!is.null(resource$errors)) - stop(resource$errors) - - resource - }, - user_agreements.destroy = function(uuid) - { - endPoint <- stringr::str_interp("user_agreements/${uuid}") - url <- paste0(private$host, endPoint) - headers <- list(Authorization = paste("OAuth2", private$token), - "Content-Type" = "application/json") - queryArgs <- NULL - - body <- NULL - - response <- private$REST$http$exec("DELETE", url, headers, body, - queryArgs, private$numRetries) - resource <- private$REST$httpParser$parseJSONResponse(response) - if(!is.null(resource$errors)) stop(resource$errors) - + resource },