X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/50de1d57245ed33b7f0a563eef9da73f16e0ca6c..47e59a35d5ed9b2cdb052894d741972324058505:/doc/_includes/_run_command_foreach_example.liquid

diff --git a/doc/_includes/_run_command_foreach_example.liquid b/doc/_includes/_run_command_foreach_example.liquid
index 828499f51f..8e3dd713d1 100644
--- a/doc/_includes/_run_command_foreach_example.liquid
+++ b/doc/_includes/_run_command_foreach_example.liquid
@@ -1,3 +1,9 @@
+{% comment %}
+Copyright (C) The Arvados Authors. All rights reserved.
+
+SPDX-License-Identifier: CC-BY-SA-3.0
+{% endcomment %}
+
 {
     "name":"run-command example pipeline",
     "components":{
@@ -15,25 +21,10 @@
                     {
                         "foreach": "read_pair",
                         "command": "$(read_pair)"
-                    },
-                    "$(glob $(dir $(sample))/*_1.fastq)",
-                    "$(glob $(dir $(sample))/*_2.fastq)"
+                    }
                 ],
                 "task.stdout": "$(basename $(glob $(dir $(sample))/*_1.fastq)).sam",
                 "task.foreach": ["sample_subdir", "read_pair"],
-                "reference_collection": "2463fa9efeb75e099685528b3b9071e0+438",
-                "samples": "df45f4be79668b6d3d974e24f78e766f+149",
-                "sample_subdir": "$(dir $(samples))",
-                "read_pair": {
-                    "group": "sample_subdir",
-                    "regex": "(.*)_[12]\\.fastq(\\.gz)?$"
-                }
-            }
-        }
-    }
-}
-
-
                 "reference_collection": {
                     "required": true,
                     "dataclass": "Collection"
@@ -41,4 +32,15 @@
                 "sample": {
                     "required": true,
                     "dataclass": "Collection"
+                },
+                "sample_subdir": "$(dir $(sample))",
+                "read_pair": {
+                    "value": {
+                        "group": "sample_subdir",
+                        "regex": "(.*)_[12]\\.fastq(\\.gz)?$"
+                    }
                 }
+            }
+        }
+    }
+}