X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/4d3a1c5346c99da360af58f1932b8f7a2ba87723..1956ba70cdf1a367a61c8a8a5428db52fa02fc7c:/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid diff --git a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid index 46aadd33ed..277b9664e9 100644 --- a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid +++ b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid @@ -6,20 +6,19 @@ title: "Running a pipeline using Workbench" notextile.
-# Go to "Collections":https://{{ site.arvados_workbench_host }}/collections . -# On the collections page, go to the search box and search for "tutorial". -# This should yield a collection with the contents "var-GS000016015-ASM.tsv.bz2" -# Click on the check box to the left of "var-GS000016015-ASM.tsv.bz2". This puts the collection in your persistent selection list. Click on the paperclip in the upper right to get a dropdown menu listing your current selections. -# Go to "Pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_templates . -# Look for a pipeline named "Tutorial pipeline". -# Click on the play button to the left of "Tutorial pipeline". This will take you to a new page to configure the pipeline. -# Under *parameter* look for "input". Set the value of "input" by clicking on on "none" to get a editing popup. At the top of the selection list in the editing popup will be the collection that you selected in step 4. -# You can now click on "Run pipeline" in the upper right to start the pipeline. -# This will reload the page with the pipeline queued to run. +# Go to "Collections":https://{{ site.arvados_workbench_host }}/collections (*Data* %(rarr)→% *Collections (data files)*). +# On the Collections page, go to the search box and search for "tutorial". +# The results should include a collection with the contents *var-GS000016015-ASM.tsv.bz2*. +# Click on the check box to the left of *var-GS000016015-ASM.tsv.bz2*. This puts the collection in your persistent selection list. You can click on the paperclip in the upper right to review your current selections. +# Go to "Pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_templates (*Compute* %(rarr)→% *Pipeline templates*). +# Look for a pipeline named *Tutorial pipeline*. +# Click on the play button to the left of *Tutorial pipeline*. This will take you to a new page to configure the pipeline. +# Under the *parameter* column, look for *input*. Set the value of *input* by clicking on *none* to get a selection popup. The collection that you selected in step 4 will be at the top of that pulldown menu. Select that collection in the pulldown menu. +# You can now click on the *Run pipeline* button in the upper right to start the pipeline. A new page shows the pipeline status, queued to run. # The page refreshes automatically every 15 seconds. You should see the pipeline running, and then finish successfully. -# Once it is finished, click on the link under the *output* column. This will take you to the collection page for the output of this pipeline. -# Click on "md5sum.txt" to see the actual file that is the output of this pipeline. -# On the collection page, click on the "Provenance graph" tab to see a graphical representation of the data elements and pipelines that were involved in generating this file. +# Once the pipeline is finished, click on the link under the *output* column. This will take you to the collection page for the output of this pipeline. +# Click on *md5sum.txt* to see the actual file that is the output of this pipeline. +# Go back to the collection page for the result. Click on the *Provenance graph* tab to see a graph illustrating the collections and scripts that were used to generate this file. notextile.