X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/436d545670d3637dcd96b429e538b995ee98a49b..1128f6e0d62f71f4ee91ab609c918ae5bb291edd:/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid diff --git a/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid b/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid index ea608b4bc1..fa33f67669 100644 --- a/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid +++ b/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid @@ -6,7 +6,7 @@ title: "Using GATK with Arvados" This tutorial demonstrates how to use the Genome Analysis Toolkit (GATK) with Arvados. In this example we will install GATK and then create a VariantFiltration job to assign pass/fail scores to variants in a VCF file. -*This tutorial assumes that you are "logged into an Arvados VM instance":{{site.baseurl}}/user/getting_started/ssh-access.html#login, and have a "working environment.":{{site.baseurl}}/user/getting_started/check-environment.html* +{% include 'tutorial_expectations' %} h2. Installing GATK