X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/42e6998c32f8d5553133e4b0b3ea02cd0c6f5554..7e7ada63bca240416584871398076c1bafc90f76:/services/crunch-run/crunchrun_test.go diff --git a/services/crunch-run/crunchrun_test.go b/services/crunch-run/crunchrun_test.go index a65d366054..9fdc689e79 100644 --- a/services/crunch-run/crunchrun_test.go +++ b/services/crunch-run/crunchrun_test.go @@ -1,3 +1,7 @@ +// Copyright (C) The Arvados Authors. All rights reserved. +// +// SPDX-License-Identifier: AGPL-3.0 + package main import ( @@ -10,6 +14,7 @@ import ( "fmt" "io" "io/ioutil" + "net" "os" "os/exec" "path/filepath" @@ -23,7 +28,6 @@ import ( "git.curoverse.com/arvados.git/sdk/go/arvados" "git.curoverse.com/arvados.git/sdk/go/arvadosclient" - "git.curoverse.com/arvados.git/sdk/go/keepclient" "git.curoverse.com/arvados.git/sdk/go/manifest" dockertypes "github.com/docker/docker/api/types" @@ -64,7 +68,11 @@ var hwImageId = "9c31ee32b3d15268a0754e8edc74d4f815ee014b693bc5109058e431dd5caea var otherManifest = ". 68a84f561b1d1708c6baff5e019a9ab3+46+Ae5d0af96944a3690becb1decdf60cc1c937f556d@5693216f 0:46:md5sum.txt\n" var otherPDH = "a3e8f74c6f101eae01fa08bfb4e49b3a+54" -var normalizedManifestWithSubdirs = ". 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt\n./subdir1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt\n./subdir1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt\n" +var normalizedManifestWithSubdirs = `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt +./subdir1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt +./subdir1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt +` + var normalizedWithSubdirsPDH = "a0def87f80dd594d4675809e83bd4f15+367" var denormalizedManifestWithSubdirs = ". 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt 0:10:subdir1/file1_in_subdir1.txt 10:17:subdir1/file2_in_subdir1.txt\n" @@ -83,6 +91,7 @@ type TestDockerClient struct { cwd string env []string api *ArvTestClient + realTemp string } func NewTestDockerClient(exitCode int) *TestDockerClient { @@ -94,8 +103,21 @@ func NewTestDockerClient(exitCode int) *TestDockerClient { return t } +type MockConn struct { + net.Conn +} + +func (m *MockConn) Write(b []byte) (int, error) { + return len(b), nil +} + +func NewMockConn() *MockConn { + c := &MockConn{} + return c +} + func (t *TestDockerClient) ContainerAttach(ctx context.Context, container string, options dockertypes.ContainerAttachOptions) (dockertypes.HijackedResponse, error) { - return dockertypes.HijackedResponse{Reader: bufio.NewReader(t.logReader)}, nil + return dockertypes.HijackedResponse{Conn: NewMockConn(), Reader: bufio.NewReader(t.logReader)}, nil } func (t *TestDockerClient) ContainerCreate(ctx context.Context, config *dockercontainer.Config, hostConfig *dockercontainer.HostConfig, networkingConfig *dockernetwork.NetworkingConfig, containerName string) (dockercontainer.ContainerCreateCreatedBody, error) { @@ -120,8 +142,15 @@ func (t *TestDockerClient) ContainerStop(ctx context.Context, container string, return nil } -func (t *TestDockerClient) ContainerWait(ctx context.Context, container string) (int64, error) { - return int64(t.finish), nil +func (t *TestDockerClient) ContainerWait(ctx context.Context, container string, condition dockercontainer.WaitCondition) (<-chan dockercontainer.ContainerWaitOKBody, <-chan error) { + body := make(chan dockercontainer.ContainerWaitOKBody) + err := make(chan error) + go func() { + body <- dockercontainer.ContainerWaitOKBody{StatusCode: int64(t.finish)} + close(body) + close(err) + }() + return body, err } func (t *TestDockerClient) ImageInspectWithRaw(ctx context.Context, image string) (dockertypes.ImageInspect, []byte, error) { @@ -235,7 +264,16 @@ func (client *ArvTestClient) Update(resourceType string, uuid string, parameters return nil } -var discoveryMap = map[string]interface{}{"defaultTrashLifetime": float64(1209600)} +var discoveryMap = map[string]interface{}{ + "defaultTrashLifetime": float64(1209600), + "crunchLimitLogBytesPerJob": float64(67108864), + "crunchLogThrottleBytes": float64(65536), + "crunchLogThrottlePeriod": float64(60), + "crunchLogThrottleLines": float64(1024), + "crunchLogPartialLineThrottlePeriod": float64(5), + "crunchLogBytesPerEvent": float64(4096), + "crunchLogSecondsBetweenEvents": float64(1), +} func (client *ArvTestClient) Discovery(key string) (interface{}, error) { return discoveryMap[key], nil @@ -270,10 +308,10 @@ func (client *KeepTestClient) PutHB(hash string, buf []byte) (string, int, error type FileWrapper struct { io.ReadCloser - len uint64 + len int64 } -func (fw FileWrapper) Len() uint64 { +func (fw FileWrapper) Size() int64 { return fw.len } @@ -281,20 +319,15 @@ func (fw FileWrapper) Seek(int64, int) (int64, error) { return 0, errors.New("not implemented") } -func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) { +func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) { if filename == hwImageId+".tar" { rdr := ioutil.NopCloser(&bytes.Buffer{}) client.Called = true return FileWrapper{rdr, 1321984}, nil - } - return nil, nil -} - -func (client *KeepTestClient) CollectionFileReader(collection map[string]interface{}, filename string) (keepclient.Reader, error) { - if filename == "/file1_in_main.txt" { - rdr := ioutil.NopCloser(&bytes.Buffer{}) + } else if filename == "/file1_in_main.txt" { + rdr := ioutil.NopCloser(strings.NewReader("foo")) client.Called = true - return FileWrapper{rdr, 1321984}, nil + return FileWrapper{rdr, 3}, nil } return nil, nil } @@ -374,11 +407,7 @@ func (KeepErrorTestClient) PutHB(hash string, buf []byte) (string, int, error) { return "", 0, errors.New("KeepError") } -func (KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) { - return nil, errors.New("KeepError") -} - -func (KeepErrorTestClient) CollectionFileReader(c map[string]interface{}, f string) (keepclient.Reader, error) { +func (KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) { return nil, errors.New("KeepError") } @@ -398,7 +427,7 @@ func (ErrorReader) Close() error { return nil } -func (ErrorReader) Len() uint64 { +func (ErrorReader) Size() int64 { return 0 } @@ -406,11 +435,7 @@ func (ErrorReader) Seek(int64, int) (int64, error) { return 0, errors.New("ErrorReader") } -func (KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) { - return ErrorReader{}, nil -} - -func (KeepReadErrorTestClient) CollectionFileReader(c map[string]interface{}, f string) (keepclient.Reader, error) { +func (KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) { return ErrorReader{}, nil } @@ -600,6 +625,8 @@ func FullRunHelper(c *C, record string, extraMounts []string, exitCode int, fn f c.Assert(err, IsNil) defer os.RemoveAll(realTemp) + docker.realTemp = realTemp + tempcount := 0 cr.MkTempDir = func(_ string, prefix string) (string, error) { tempcount++ @@ -622,7 +649,9 @@ func FullRunHelper(c *C, record string, extraMounts []string, exitCode int, fn f } err = cr.Run() - c.Check(err, IsNil) + if api.CalledWith("container.state", "Complete") != nil { + c.Check(err, IsNil) + } c.Check(api.WasSetRunning, Equals, true) c.Check(api.Content[api.Calls-1]["container"].(arvadosclient.Dict)["log"], NotNil) @@ -967,6 +996,22 @@ func (s *TestSuite) TestSetupMounts(c *C) { checkEmpty() } + { + i = 0 + cr.ArvMountPoint = "" + cr.Container.Mounts = make(map[string]arvados.Mount) + cr.Container.Mounts["/out"] = arvados.Mount{Kind: "tmp"} + cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"} + cr.OutputPath = "/out" + + err := cr.SetupMounts() + c.Check(err, IsNil) + c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"}) + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/out", realTemp + "/3:/tmp"}) + cr.CleanupDirs() + checkEmpty() + } + { i = 0 cr.ArvMountPoint = "" @@ -1142,7 +1187,7 @@ func (s *TestSuite) TestSetupMounts(c *C) { err := cr.SetupMounts() c.Check(err, NotNil) - c.Check(err, ErrorMatches, `Unsupported mount kind 'tmp' for stdin. Only 'collection' is supported.*`) + c.Check(err, ErrorMatches, `Unsupported mount kind 'tmp' for stdin.*`) cr.CleanupDirs() checkEmpty() } @@ -1393,6 +1438,76 @@ func (s *TestSuite) TestStdoutWithMountPointsUnderOutputDirDenormalizedManifest( } } +func (s *TestSuite) TestOutputSymlinkToInput(c *C) { + helperRecord := `{ + "command": ["/bin/sh", "-c", "echo $FROBIZ"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {"FROBIZ": "bilbo"}, + "mounts": { + "/tmp": {"kind": "tmp"}, + "/keep/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path": "/subdir1/file2_in_subdir1.txt"}, + "/keep/foo2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367"} + }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }` + + extraMounts := []string{ + "a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt", + } + + api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) { + os.Symlink("/keep/foo/sub1file2", t.realTemp+"/2/baz") + os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz2") + os.Symlink("/keep/foo2/subdir1", t.realTemp+"/2/baz3") + os.Mkdir(t.realTemp+"/2/baz4", 0700) + os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz4/baz5") + t.logWriter.Close() + }) + + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + for _, v := range api.Content { + if v["collection"] != nil { + collection := v["collection"].(arvadosclient.Dict) + if strings.Index(collection["name"].(string), "output") == 0 { + manifest := collection["manifest_text"].(string) + c.Check(manifest, Equals, `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz 9:18:baz2 +./baz3 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt +./baz3/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt +./baz4 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz5 +`) + } + } + } +} + +func (s *TestSuite) TestOutputError(c *C) { + helperRecord := `{ + "command": ["/bin/sh", "-c", "echo $FROBIZ"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {"FROBIZ": "bilbo"}, + "mounts": { + "/tmp": {"kind": "tmp"} + }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }` + + extraMounts := []string{} + + api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) { + os.Symlink("/etc/hosts", t.realTemp+"/2/baz") + t.logWriter.Close() + }) + + c.Check(api.CalledWith("container.state", "Cancelled"), NotNil) +} + func (s *TestSuite) TestStdinCollectionMountPoint(c *C) { helperRecord := `{ "command": ["/bin/sh", "-c", "echo $FROBIZ"], @@ -1425,10 +1540,70 @@ func (s *TestSuite) TestStdinCollectionMountPoint(c *C) { collection := v["collection"].(arvadosclient.Dict) if strings.Index(collection["name"].(string), "output") == 0 { manifest := collection["manifest_text"].(string) + c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out +`) + } + } + } +} + +func (s *TestSuite) TestStdinJsonMountPoint(c *C) { + helperRecord := `{ + "command": ["/bin/sh", "-c", "echo $FROBIZ"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {"FROBIZ": "bilbo"}, + "mounts": { + "/tmp": {"kind": "tmp"}, + "stdin": {"kind": "json", "content": "foo"}, + "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} + }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }` + + api, _, _ := FullRunHelper(c, helperRecord, nil, 0, func(t *TestDockerClient) { + t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n")) + t.logWriter.Close() + }) + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + for _, v := range api.Content { + if v["collection"] != nil { + collection := v["collection"].(arvadosclient.Dict) + if strings.Index(collection["name"].(string), "output") == 0 { + manifest := collection["manifest_text"].(string) c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out `) } } } } + +func (s *TestSuite) TestStderrMount(c *C) { + api, _, _ := FullRunHelper(c, `{ + "command": ["/bin/sh", "-c", "echo hello;exit 1"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": ".", + "environment": {}, + "mounts": {"/tmp": {"kind": "tmp"}, + "stdout": {"kind": "file", "path": "/tmp/a/out.txt"}, + "stderr": {"kind": "file", "path": "/tmp/b/err.txt"}}, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} +}`, nil, 1, func(t *TestDockerClient) { + t.logWriter.Write(dockerLog(1, "hello\n")) + t.logWriter.Write(dockerLog(2, "oops\n")) + t.logWriter.Close() + }) + + final := api.CalledWith("container.state", "Complete") + c.Assert(final, NotNil) + c.Check(final["container"].(arvadosclient.Dict)["exit_code"], Equals, 1) + c.Check(final["container"].(arvadosclient.Dict)["log"], NotNil) + + c.Check(api.CalledWith("collection.manifest_text", "./a b1946ac92492d2347c6235b4d2611184+6 0:6:out.txt\n./b 38af5c54926b620264ab1501150cf189+5 0:5:err.txt\n"), NotNil) +}