X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/3a0aa1db801154916f50b1b299d5100945a3e1df..3fa6aa4043286ad61e5f29c136d3cc2942e8750d:/doc/user/cwl/bwa-mem/bwa-mem.cwl

diff --git a/doc/user/cwl/bwa-mem/bwa-mem.cwl b/doc/user/cwl/bwa-mem/bwa-mem.cwl
index ba3b6a0e89..018867c83e 100755
--- a/doc/user/cwl/bwa-mem/bwa-mem.cwl
+++ b/doc/user/cwl/bwa-mem/bwa-mem.cwl
@@ -1,16 +1,20 @@
 #!/usr/bin/env cwl-runner
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: CC-BY-SA-3.0
+
 cwlVersion: v1.0
 class: CommandLineTool
 
 hints:
   DockerRequirement:
-    dockerPull: biodckr/bwa
+    dockerPull: quay.io/biocontainers/bwa:0.7.17--ha92aebf_3
 
 baseCommand: [bwa, mem]
 
 arguments:
   - {prefix: "-t", valueFrom: $(runtime.cores)}
-  - {prefix: "-R", valueFrom: "@RG\tID:$(inputs.group_id)\tPL:$(inputs.PL)\tSM:$(inputs.sample_id)"}
+  - {prefix: "-R", valueFrom: '@RG\\\tID:$(inputs.group_id)\\\tPL:$(inputs.PL)\\\tSM:$(inputs.sample_id)'}
 
 inputs:
   reference: