X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/342c15f625fda8746e7d74510a298286b3a52196..3facf89bf048487ee718fe15d012b489f2d407b7:/sdk/R/README.Rmd diff --git a/sdk/R/README.Rmd b/sdk/R/README.Rmd index 7ea226fd09..63bf55373d 100644 --- a/sdk/R/README.Rmd +++ b/sdk/R/README.Rmd @@ -14,7 +14,7 @@ knitr::opts_chunk$set(eval=FALSE) ``` ```{r} -install.packages("ArvadosR", repos=c("http://r.arvados.org", getOption("repos")["CRAN"]), dependencies=TRUE) +install.packages("ArvadosR", repos=c("https://r.arvados.org", getOption("repos")["CRAN"]), dependencies=TRUE) ``` Note: on Linux, you may have to install supporting packages. @@ -133,7 +133,7 @@ files <- collection$getFileListing() arvadosFile <- collection$get("location/to/my/file.cpp") ``` - or +or ```{r} arvadosSubcollection <- collection$get("location/to/my/directory/") @@ -177,7 +177,7 @@ fileContent <- arvadosFile$read("raw", offset = 1024, length = 512) size <- arvadosFile$getSizeInBytes() ``` - or +or ```{r} size <- arvadosSubcollection$getSizeInBytes() @@ -189,7 +189,7 @@ size <- arvadosSubcollection$getSizeInBytes() collection$create(files) ``` - Example: +Example: ```{r} mainFile <- collection$create("cpp/src/main.cpp") @@ -219,9 +219,9 @@ subcollection$remove("fileInsideSubcollection.exe") subcollection$remove("folderInsideSubcollection/") ``` -* Move file or folder inside collection: +* Move or rename a file or folder within a collection (moving between collections is currently not supported): -Directley from collection +Directly from collection ```{r} collection$move("folder/file.cpp", "file.cpp") @@ -244,9 +244,9 @@ subcollection$move("newDestination/folder") Make sure to include new file name in destination. In second example file$move("newDestination/") will not work. -* Copy file or folder inside collection: +* Copy file or folder within a collection (copying between collections is currently not supported): -Directley from collection +Directly from collection ```{r} collection$copy("folder/file.cpp", "file.cpp")