X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/3409236dee75142911976ebaef134ae203a726c6..35336cd73e444534cb2eda20e3730464cc4e6553:/apps/workbench/app/controllers/collections_controller.rb

diff --git a/apps/workbench/app/controllers/collections_controller.rb b/apps/workbench/app/controllers/collections_controller.rb
index 3a1013a32c..d46ec0354c 100644
--- a/apps/workbench/app/controllers/collections_controller.rb
+++ b/apps/workbench/app/controllers/collections_controller.rb
@@ -2,6 +2,9 @@ class CollectionsController < ApplicationController
   skip_before_filter :find_object_by_uuid, :only => [:provenance]
   skip_before_filter :check_user_agreements, :only => [:show_file]
 
+  def show_pane_list
+    %w(Files Attributes Metadata Provenance_graph Used_by JSON API)
+  end
   def index
     if params[:search].andand.length.andand > 0
       tags = Link.where(any: ['contains', params[:search]])
@@ -16,7 +19,7 @@ class CollectionsController < ApplicationController
     @collection_info = {}
     @collections.each do |c|
       @collection_info[c.uuid] = {
-        tags: [],
+        tag_links: [],
         wanted: false,
         wanted_by_me: false,
         provenance: [],
@@ -28,7 +31,7 @@ class CollectionsController < ApplicationController
       info = @collection_info[link.head_uuid]
       case link.link_class
       when 'tag'
-        info[:tags] << link.name
+        info[:tag_links] << link
       when 'resources'
         info[:wanted] = true
         info[:wanted_by_me] ||= link.tail_uuid == current_user.uuid
@@ -52,144 +55,6 @@ class CollectionsController < ApplicationController
     self.response_body = FileStreamer.new opts
   end
 
-  def self.describe_node(uuid)
-    uuid = uuid.to_s
-    rsc = ArvadosBase::resource_class_for_uuid uuid
-    if rsc
-      "\"#{uuid}\" [label=\"#{rsc}\\n#{uuid}\",href=\"/#{rsc.to_s.underscore.pluralize rsc}/#{uuid}\"];"
-    else
-      ""
-    end
-  end
-
-  def self.job_uuid(job)
-    # "#{job[:script]}\\n#{job[:script_version]}"
-    "#{job[:script]}"
-  end
-
-  def self.collection_uuid(uuid)
-    m = /([a-f0-9]{32}(\+[0-9]+)?)(\+.*)?/.match(uuid.to_s)
-    if m
-      m[1]
-    else
-      nil
-    end
-  end
-
-  def self.script_param_edges(visited, job, prefix, sp, opts)
-    gr = ""
-    if sp and not sp.empty?
-      case sp
-      when Hash
-        sp.each do |k, v|
-          if prefix.size > 0
-            k = prefix + "::" + k.to_s
-          end
-          gr += CollectionsController::script_param_edges(visited, job, k.to_s, v, opts)
-        end
-      when Array
-        sp.each do |v|
-          gr += CollectionsController::script_param_edges(visited, job, prefix, v, opts)
-        end
-      else
-        m = collection_uuid(sp)
-        if m
-          gr += "\"#{job_uuid(job)}\" -> \"#{m}\" [label=\" #{prefix}\"];"
-          gr += CollectionsController::generate_provenance_edges(visited, m, opts)
-        end
-      end
-    end
-    gr
-  end
-
-  def self.generate_provenance_edges(pdata, uuid, opts)
-    gr = ""
-    m = CollectionsController::collection_uuid(uuid)
-    uuid = m if m
-
-    uuid = uuid.intern if uuid
-
-    if (not uuid) or uuid.empty? \
-      or (pdata[uuid] and pdata[uuid][:_visited])
-
-      #puts "already visited #{uuid}"
-      return ""
-    end
-
-    if not pdata[uuid] then 
-      return CollectionsController::describe_node(uuid) 
-    else
-      pdata[uuid][:_visited] = true
-    end
-
-    #puts "visiting #{uuid}"
-
-    if m  
-      # uuid is a collection
-      gr += CollectionsController::describe_node(uuid)
-
-      pdata.each do |k, job|
-        if job[:output] == uuid.to_s
-          gr += "\"#{uuid}\" -> \"#{job_uuid(job)}\" [label=\"output\"];"
-          gr += CollectionsController::generate_provenance_edges(pdata, job[:uuid])
-        end
-        if job[:log] == uuid.to_s
-          gr += "\"#{uuid}\" -> \"#{job_uuid(job)}\" [label=\"log\"];"
-          gr += CollectionsController::generate_provenance_edges(pdata, job[:uuid])
-        end
-      end
-    else
-      # uuid is something else
-      rsc = ArvadosBase::resource_class_for_uuid uuid.to_s
-
-      if rsc == Job
-        job = pdata[uuid]
-        if job
-          gr += CollectionsController::script_param_edges(pdata, job, "", job[:script_parameters], opts)
-        end
-      else
-        gr += CollectionsController::describe_node(uuid)
-      end
-    end
-
-    pdata.each do |k, link|
-      if link[:head_uuid] == uuid.to_s and link[:link_class] == "provenance"
-        gr += CollectionsController::describe_node(link[:tail_uuid])
-        gr += "\"#{link[:head_uuid]}\" -> \"#{link[:tail_uuid]}\" [label=\" #{link[:name]}\", href=\"/links/#{link[:uuid]}\"];"
-        gr += CollectionsController::generate_provenance_edges(pdata, link[:tail_uuid], opts)
-      end
-    end
-
-    #puts "finished #{uuid}"
-
-    gr
-  end
-
-  def self.create_provenance_graph(pdata, uuid, opts={})
-    require 'open3'
-    
-    gr = """strict digraph {
-node [fontsize=8,shape=box];
-edge [dir=back,fontsize=8];"""
-
-    #puts "pdata is #{pdata}"
-
-    gr += CollectionsController::generate_provenance_edges(pdata, uuid, opts)
-
-    gr += "}"
-    svg = ""
-
-    Open3.popen2("dot", "-Tsvg") do |stdin, stdout, wait_thr|
-      stdin.print(gr)
-      stdin.close
-      svg = stdout.read()
-      wait_thr.value
-      stdout.close()
-    end
-
-    svg = svg.sub(/<\?xml.*?\?>/m, "")
-    svg = svg.sub(/<!DOCTYPE.*?>/m, "")
-  end
 
   def show
     return super if !@object
@@ -237,7 +102,16 @@ edge [dir=back,fontsize=8];"""
     end
     
     Collection.where(uuid: @object.uuid).each do |u|
-      @prov_svg = CollectionsController::create_provenance_graph u.provenance, u.uuid
+      puts request
+      @prov_svg = ProvenanceHelper::create_provenance_graph(u.provenance, "provenance_svg", 
+                                                            {:request => request,
+                                                              :direction => :bottom_up, 
+                                                              :combine_jobs => :script_only}) rescue nil
+      @used_by_svg = ProvenanceHelper::create_provenance_graph(u.used_by, "used_by_svg", 
+                                                               {:request => request,
+                                                                 :direction => :top_down, 
+                                                                 :combine_jobs => :script_only, 
+                                                                 :pdata_only => true}) rescue nil
     end
   end