X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/31d31c010bb6b5170e3962fdd50c6d393cfe6076..8352a6863cdcc2794108a71fd5b64e7b75f9dd20:/sdk/cwl/tests/test_submit.py diff --git a/sdk/cwl/tests/test_submit.py b/sdk/cwl/tests/test_submit.py index 85c49c9134..1b892a9836 100644 --- a/sdk/cwl/tests/test_submit.py +++ b/sdk/cwl/tests/test_submit.py @@ -1,3 +1,7 @@ +# Copyright (C) The Arvados Authors. All rights reserved. +# +# SPDX-License-Identifier: Apache-2.0 + import copy import cStringIO import functools @@ -11,10 +15,11 @@ import unittest import arvados import arvados.collection import arvados_cwl +import arvados_cwl.executor import arvados_cwl.runner import arvados.keep -from .matcher import JsonDiffMatcher +from .matcher import JsonDiffMatcher, StripYAMLComments from .mock_discovery import get_rootDesc import ruamel.yaml as yaml @@ -34,7 +39,6 @@ def stubs(func): stubs.events = events stubs.keepdocker = keepdocker - def putstub(p, **kwargs): return "%s+%i" % (hashlib.md5(p).hexdigest(), len(p)) keep_client1().put.side_effect = putstub @@ -43,8 +47,18 @@ def stubs(func): keep_client2.put.side_effect = putstub stubs.keep_client = keep_client2 - stubs.keepdocker.return_value = [("zzzzz-4zz18-zzzzzzzzzzzzzz3", "")] + stubs.docker_images = { + "arvados/jobs:"+arvados_cwl.__version__: [("zzzzz-4zz18-zzzzzzzzzzzzzd3", "")], + "debian:8": [("zzzzz-4zz18-zzzzzzzzzzzzzd4", "")], + "arvados/jobs:123": [("zzzzz-4zz18-zzzzzzzzzzzzzd5", "")], + "arvados/jobs:latest": [("zzzzz-4zz18-zzzzzzzzzzzzzd6", "")], + } + def kd(a, b, image_name=None, image_tag=None): + return stubs.docker_images.get("%s:%s" % (image_name, image_tag), []) + stubs.keepdocker.side_effect = kd + stubs.fake_user_uuid = "zzzzz-tpzed-zzzzzzzzzzzzzzz" + stubs.fake_container_uuid = "zzzzz-dz642-zzzzzzzzzzzzzzz" stubs.api = mock.MagicMock() stubs.api._rootDesc = get_rootDesc() @@ -53,33 +67,66 @@ def stubs(func): "uuid": stubs.fake_user_uuid, } stubs.api.collections().list().execute.return_value = {"items": []} - stubs.api.collections().create().execute.side_effect = ({ - "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz1", - "portable_data_hash": "99999999999999999999999999999991+99", - "manifest_text": "" - }, { - "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz2", - "portable_data_hash": "99999999999999999999999999999992+99", - "manifest_text": "./tool 00000000000000000000000000000000+0 0:0:submit_tool.cwl 0:0:blub.txt" - }, - { - "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz4", - "portable_data_hash": "99999999999999999999999999999994+99", - "manifest_text": "" - }, - { - "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz5", - "portable_data_hash": "99999999999999999999999999999995+99", - "manifest_text": "" - }, - { - "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz6", - "portable_data_hash": "99999999999999999999999999999996+99", - "manifest_text": "" + stubs.api.containers().current().execute.return_value = { + "uuid": stubs.fake_container_uuid, } - ) - stubs.api.collections().get().execute.return_value = { - "portable_data_hash": "99999999999999999999999999999993+99", "manifest_text": "./tool 00000000000000000000000000000000+0 0:0:submit_tool.cwl 0:0:blub.txt"} + + class CollectionExecute(object): + def __init__(self, exe): + self.exe = exe + def execute(self, num_retries=None): + return self.exe + + def collection_createstub(created_collections, body, ensure_unique_name=None): + mt = body["manifest_text"] + uuid = "zzzzz-4zz18-zzzzzzzzzzzzzx%d" % len(created_collections) + pdh = "%s+%i" % (hashlib.md5(mt).hexdigest(), len(mt)) + created_collections[uuid] = { + "uuid": uuid, + "portable_data_hash": pdh, + "manifest_text": mt + } + return CollectionExecute(created_collections[uuid]) + + def collection_getstub(created_collections, uuid): + for v in created_collections.itervalues(): + if uuid in (v["uuid"], v["portable_data_hash"]): + return CollectionExecute(v) + + created_collections = { + "99999999999999999999999999999998+99": { + "uuid": "", + "portable_data_hash": "99999999999999999999999999999998+99", + "manifest_text": ". 99999999999999999999999999999998+99 0:0:file1.txt" + }, + "99999999999999999999999999999994+99": { + "uuid": "", + "portable_data_hash": "99999999999999999999999999999994+99", + "manifest_text": ". 99999999999999999999999999999994+99 0:0:expect_arvworkflow.cwl" + }, + "zzzzz-4zz18-zzzzzzzzzzzzzd3": { + "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzd3", + "portable_data_hash": "999999999999999999999999999999d3+99", + "manifest_text": "" + }, + "zzzzz-4zz18-zzzzzzzzzzzzzd4": { + "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzd4", + "portable_data_hash": "999999999999999999999999999999d4+99", + "manifest_text": "" + }, + "zzzzz-4zz18-zzzzzzzzzzzzzd5": { + "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzd5", + "portable_data_hash": "999999999999999999999999999999d5+99", + "manifest_text": "" + }, + "zzzzz-4zz18-zzzzzzzzzzzzzd6": { + "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzd6", + "portable_data_hash": "999999999999999999999999999999d6+99", + "manifest_text": "" + } + } + stubs.api.collections().create.side_effect = functools.partial(collection_createstub, created_collections) + stubs.api.collections().get.side_effect = functools.partial(collection_getstub, created_collections) stubs.expect_job_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz" stubs.api.jobs().create().execute.return_value = { @@ -100,13 +147,13 @@ def stubs(func): } stubs.expect_job_spec = { 'runtime_constraints': { - 'docker_image': 'arvados/jobs:'+arvados_cwl.__version__, + 'docker_image': '999999999999999999999999999999d3+99', 'min_ram_mb_per_node': 1024 }, 'script_parameters': { 'x': { 'basename': 'blorp.txt', - 'location': 'keep:99999999999999999999999999999992+99/blorp.txt', + 'location': 'keep:169f39d466a5438ac4a90e779bf750c7+53/blorp.txt', 'class': 'File' }, 'y': { @@ -119,12 +166,12 @@ def stubs(func): "listing": [{ "basename": "renamed.txt", "class": "File", - "location": "keep:99999999999999999999999999999998+99/file1.txt" + "location": "keep:99999999999999999999999999999998+99/file1.txt", + "size": 0 }], 'class': 'Directory' }, - 'cwl:tool': - '99999999999999999999999999999994+99/workflow.cwl#main' + 'cwl:tool': '57ad063d64c60dbddc027791f0649211+60/workflow.cwl#main' }, 'repository': 'arvados', 'script_version': 'master', @@ -138,15 +185,26 @@ def stubs(func): 'owner_uuid': None, "components": { "cwl-runner": { - 'runtime_constraints': {'docker_image': 'arvados/jobs:'+arvados_cwl.__version__, 'min_ram_mb_per_node': 1024}, + 'runtime_constraints': {'docker_image': '999999999999999999999999999999d3+99', 'min_ram_mb_per_node': 1024}, 'script_parameters': { 'y': {"value": {'basename': '99999999999999999999999999999998+99', 'location': 'keep:99999999999999999999999999999998+99', 'class': 'Directory'}}, - 'x': {"value": {'basename': 'blorp.txt', 'class': 'File', 'location': 'keep:99999999999999999999999999999992+99/blorp.txt'}}, + 'x': {"value": { + 'basename': 'blorp.txt', + 'class': 'File', + 'location': 'keep:169f39d466a5438ac4a90e779bf750c7+53/blorp.txt', + "size": 16 + }}, 'z': {"value": {'basename': 'anonymous', 'class': 'Directory', 'listing': [ - {'basename': 'renamed.txt', 'class': 'File', 'location': 'keep:99999999999999999999999999999998+99/file1.txt'} + { + 'basename': 'renamed.txt', + 'class': 'File', 'location': + 'keep:99999999999999999999999999999998+99/file1.txt', + 'size': 0 + } ]}}, - 'cwl:tool': '99999999999999999999999999999994+99/workflow.cwl#main', + 'cwl:tool': '57ad063d64c60dbddc027791f0649211+60/workflow.cwl#main', + 'arv:debug': True, 'arv:enable_reuse': True, 'arv:on_error': 'continue' }, @@ -173,7 +231,7 @@ def stubs(func): expect_packed_workflow = yaml.round_trip_load(f) stubs.expect_container_spec = { - 'priority': 1, + 'priority': 500, 'mounts': { '/var/spool/cwl': { 'writable': True, @@ -190,22 +248,36 @@ def stubs(func): '/var/lib/cwl/cwl.input.json': { 'kind': 'json', 'content': { - 'y': {'basename': '99999999999999999999999999999998+99', 'location': 'keep:99999999999999999999999999999998+99', 'class': 'Directory'}, - 'x': {'basename': u'blorp.txt', 'class': 'File', 'location': u'keep:99999999999999999999999999999992+99/blorp.txt'}, + 'y': { + 'basename': '99999999999999999999999999999998+99', + 'location': 'keep:99999999999999999999999999999998+99', + 'class': 'Directory'}, + 'x': { + 'basename': u'blorp.txt', + 'class': 'File', + 'location': u'keep:169f39d466a5438ac4a90e779bf750c7+53/blorp.txt', + "size": 16 + }, 'z': {'basename': 'anonymous', 'class': 'Directory', 'listing': [ - {'basename': 'renamed.txt', 'class': 'File', 'location': 'keep:99999999999999999999999999999998+99/file1.txt'} + {'basename': 'renamed.txt', + 'class': 'File', + 'location': 'keep:99999999999999999999999999999998+99/file1.txt', + 'size': 0 + } ]} }, 'kind': 'json' } }, + 'secret_mounts': {}, 'state': 'Committed', - 'owner_uuid': None, - 'command': ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', - '--enable-reuse', '--on-error=continue', + 'command': ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', '--debug', '--on-error=continue', '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'], 'name': 'submit_wf.cwl', - 'container_image': 'arvados/jobs:'+arvados_cwl.__version__, + 'container_image': '999999999999999999999999999999d3+99', 'output_path': '/var/spool/cwl', 'cwd': '/var/spool/cwl', 'runtime_constraints': { @@ -213,7 +285,9 @@ def stubs(func): 'vcpus': 1, 'ram': 1024*1024*1024 }, - "properties": {} + 'use_existing': True, + 'properties': {}, + 'secret_mounts': {} } stubs.expect_workflow_uuid = "zzzzz-7fd4e-zzzzzzzzzzzzzzz" @@ -233,10 +307,17 @@ def stubs(func): class TestSubmit(unittest.TestCase): - @mock.patch("arvados_cwl.runner.arv_docker_get_image") + @mock.patch("arvados_cwl.arvdocker.arv_docker_get_image") @mock.patch("time.sleep") @stubs def test_submit(self, stubs, tm, arvdock): + def get_image(api_client, dockerRequirement, pull_image, project_uuid): + if dockerRequirement["dockerPull"] == 'arvados/jobs:'+arvados_cwl.__version__: + return '999999999999999999999999999999d3+99' + elif dockerRequirement["dockerPull"] == "debian:8": + return '999999999999999999999999999999d4+99' + arvdock.side_effect = get_image + capture_stdout = cStringIO.StringIO() exited = arvados_cwl.main( ["--submit", "--no-wait", "--api=jobs", "--debug", @@ -245,24 +326,28 @@ class TestSubmit(unittest.TestCase): self.assertEqual(exited, 0) stubs.api.collections().create.assert_has_calls([ - mock.call(), mock.call(body=JsonDiffMatcher({ 'manifest_text': '. 5bcc9fe8f8d5992e6cf418dc7ce4dbb3+16 0:16:blub.txt\n', 'replication_desired': None, - 'name': 'submit_tool.cwl dependencies', - }), ensure_unique_name=True), - mock.call().execute(num_retries=4), + 'name': 'submit_tool.cwl dependencies (5d373e7629203ce39e7c22af98a0f881+52)', + }), ensure_unique_name=False), mock.call(body=JsonDiffMatcher({ 'manifest_text': '. 979af1245a12a1fed634d4222473bfdc+16 0:16:blorp.txt\n', 'replication_desired': None, - 'name': 'submit_wf.cwl input', - }), ensure_unique_name=True), - mock.call().execute(num_retries=4)]) + 'name': 'submit_wf.cwl input (169f39d466a5438ac4a90e779bf750c7+53)', + }), ensure_unique_name=False), + mock.call(body=JsonDiffMatcher({ + 'manifest_text': + ". 68089141fbf7e020ac90a9d6a575bc8f+1312 0:1312:workflow.cwl\n", + 'replication_desired': None, + 'name': 'submit_wf.cwl', + }), ensure_unique_name=True) ]) arvdock.assert_has_calls([ mock.call(stubs.api, {"class": "DockerRequirement", "dockerPull": "debian:8"}, True, None), + mock.call(stubs.api, {"class": "DockerRequirement", "dockerPull": "debian:8", 'http://arvados.org/cwl#dockerCollectionPDH': '999999999999999999999999999999d4+99'}, True, None), mock.call(stubs.api, {'dockerPull': 'arvados/jobs:'+arvados_cwl.__version__}, True, None) ]) @@ -285,12 +370,22 @@ class TestSubmit(unittest.TestCase): expect_pipeline = copy.deepcopy(stubs.expect_pipeline_instance) expect_pipeline["components"]["cwl-runner"]["script_parameters"]["arv:enable_reuse"] = {"value": False} + expect_pipeline["properties"] = {"run_options": {"enable_job_reuse": False}} stubs.api.pipeline_instances().create.assert_called_with( body=JsonDiffMatcher(expect_pipeline)) self.assertEqual(capture_stdout.getvalue(), stubs.expect_pipeline_uuid + '\n') + @stubs + def test_error_when_multiple_storage_classes_specified(self, stubs): + storage_classes = "foo,bar" + exited = arvados_cwl.main( + ["--debug", "--storage-classes", storage_classes, + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + sys.stdin, sys.stderr, api_client=stubs.api) + self.assertEqual(exited, 1) + @mock.patch("time.sleep") @stubs def test_submit_on_error(self, stubs, tm): @@ -404,7 +499,7 @@ class TestSubmit(unittest.TestCase): project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz' exited = arvados_cwl.main( - ["--submit", "--no-wait", + ["--submit", "--no-wait", "--debug", "--project-uuid", project_uuid, "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], sys.stdout, sys.stderr, api_client=stubs.api) @@ -428,21 +523,18 @@ class TestSubmit(unittest.TestCase): logging.exception("") stubs.api.collections().create.assert_has_calls([ - mock.call(), mock.call(body=JsonDiffMatcher({ 'manifest_text': '. 5bcc9fe8f8d5992e6cf418dc7ce4dbb3+16 0:16:blub.txt\n', 'replication_desired': None, - 'name': 'submit_tool.cwl dependencies', - }), ensure_unique_name=True), - mock.call().execute(num_retries=4), + 'name': 'submit_tool.cwl dependencies (5d373e7629203ce39e7c22af98a0f881+52)', + }), ensure_unique_name=False), mock.call(body=JsonDiffMatcher({ 'manifest_text': '. 979af1245a12a1fed634d4222473bfdc+16 0:16:blorp.txt\n', 'replication_desired': None, - 'name': 'submit_wf.cwl input', - }), ensure_unique_name=True), - mock.call().execute(num_retries=4)]) + 'name': 'submit_wf.cwl input (169f39d466a5438ac4a90e779bf750c7+53)', + }), ensure_unique_name=False)]) expect_container = copy.deepcopy(stubs.expect_container_spec) stubs.api.container_requests().create.assert_called_with( @@ -463,9 +555,49 @@ class TestSubmit(unittest.TestCase): logging.exception("") expect_container = copy.deepcopy(stubs.expect_container_spec) - expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', - '--disable-reuse', '--on-error=continue', - '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + expect_container["command"] = [ + 'arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--disable-reuse', '--debug', '--on-error=continue', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + expect_container["use_existing"] = False + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + + @stubs + def test_submit_container_reuse_disabled_by_workflow(self, stubs): + capture_stdout = cStringIO.StringIO() + + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", + "tests/wf/submit_wf_no_reuse.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["command"] = [ + 'arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--disable-reuse', '--debug', '--on-error=continue', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + expect_container["use_existing"] = False + expect_container["name"] = "submit_wf_no_reuse.cwl" + expect_container["mounts"]["/var/lib/cwl/workflow.json"]["content"]["$graph"][1]["hints"] = [ + { + "class": "http://arvados.org/cwl#ReuseRequirement", + "enableReuse": False, + }, + ] + expect_container["mounts"]["/var/lib/cwl/workflow.json"]["content"]["$graph"][0]["$namespaces"] = { + "arv": "http://arvados.org/cwl#", + "cwltool": "http://commonwl.org/cwltool#" + } stubs.api.container_requests().create.assert_called_with( body=JsonDiffMatcher(expect_container)) @@ -486,9 +618,11 @@ class TestSubmit(unittest.TestCase): logging.exception("") expect_container = copy.deepcopy(stubs.expect_container_spec) - expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', - '--enable-reuse', '--on-error=stop', - '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', '--debug', '--on-error=stop', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] stubs.api.container_requests().create.assert_called_with( body=JsonDiffMatcher(expect_container)) @@ -510,9 +644,12 @@ class TestSubmit(unittest.TestCase): logging.exception("") expect_container = copy.deepcopy(stubs.expect_container_spec) - expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', - "--output-name="+output_name, '--enable-reuse', '--on-error=continue', - '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', + "--output-name="+output_name, '--debug', '--on-error=continue', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] expect_container["output_name"] = output_name stubs.api.container_requests().create.assert_called_with( @@ -520,6 +657,123 @@ class TestSubmit(unittest.TestCase): self.assertEqual(capture_stdout.getvalue(), stubs.expect_container_request_uuid + '\n') + @stubs + def test_submit_storage_classes(self, stubs): + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--debug", "--submit", "--no-wait", "--api=containers", "--storage-classes=foo", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', "--debug", + "--storage-classes=foo", '--on-error=continue', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @mock.patch("arvados_cwl.task_queue.TaskQueue") + @mock.patch("arvados_cwl.arvworkflow.ArvadosWorkflow.job") + @mock.patch("arvados_cwl.executor.ArvCwlExecutor.make_output_collection", return_value = (None, None)) + @stubs + def test_storage_classes_correctly_propagate_to_make_output_collection(self, stubs, make_output, job, tq): + def set_final_output(job_order, output_callback, runtimeContext): + output_callback("zzzzz-4zz18-zzzzzzzzzzzzzzzz", "success") + return [] + job.side_effect = set_final_output + + try: + exited = arvados_cwl.main( + ["--debug", "--local", "--storage-classes=foo", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + sys.stdin, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + make_output.assert_called_with(u'Output of submit_wf.cwl', ['foo'], '', 'zzzzz-4zz18-zzzzzzzzzzzzzzzz') + + @mock.patch("arvados_cwl.task_queue.TaskQueue") + @mock.patch("arvados_cwl.arvworkflow.ArvadosWorkflow.job") + @mock.patch("arvados_cwl.executor.ArvCwlExecutor.make_output_collection", return_value = (None, None)) + @stubs + def test_default_storage_classes_correctly_propagate_to_make_output_collection(self, stubs, make_output, job, tq): + def set_final_output(job_order, output_callback, runtimeContext): + output_callback("zzzzz-4zz18-zzzzzzzzzzzzzzzz", "success") + return [] + job.side_effect = set_final_output + + try: + exited = arvados_cwl.main( + ["--debug", "--local", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + sys.stdin, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + make_output.assert_called_with(u'Output of submit_wf.cwl', ['default'], '', 'zzzzz-4zz18-zzzzzzzzzzzzzzzz') + + @stubs + def test_submit_container_output_ttl(self, stubs): + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--intermediate-output-ttl", "3600", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', '--debug', '--on-error=continue', + "--intermediate-output-ttl=3600", + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @stubs + def test_submit_container_trash_intermediate(self, stubs): + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--trash-intermediate", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', '--debug', '--on-error=continue', + "--trash-intermediate", + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + @stubs def test_submit_container_output_tags(self, stubs): output_tags = "tag0,tag1,tag2" @@ -535,9 +789,12 @@ class TestSubmit(unittest.TestCase): logging.exception("") expect_container = copy.deepcopy(stubs.expect_container_spec) - expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', - "--output-tags="+output_tags, '--enable-reuse', '--on-error=continue', - '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', + "--output-tags="+output_tags, '--debug', '--on-error=continue', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] stubs.api.container_requests().create.assert_called_with( body=JsonDiffMatcher(expect_container)) @@ -569,6 +826,7 @@ class TestSubmit(unittest.TestCase): @stubs def test_submit_file_keepref(self, stubs, tm, collectionReader): capture_stdout = cStringIO.StringIO() + collectionReader().find.return_value = arvados.arvfile.ArvadosFile(mock.MagicMock(), "blorp.txt") exited = arvados_cwl.main( ["--submit", "--no-wait", "--api=containers", "--debug", "tests/wf/submit_keepref_wf.cwl"], @@ -592,7 +850,7 @@ class TestSubmit(unittest.TestCase): self.assertEqual(exited, 0) expect_container = { - 'priority': 1, + 'priority': 500, 'mounts': { '/var/spool/cwl': { 'writable': True, @@ -613,12 +871,13 @@ class TestSubmit(unittest.TestCase): 'kind': 'json' } }, 'state': 'Committed', - 'owner_uuid': None, 'output_path': '/var/spool/cwl', 'name': 'expect_arvworkflow.cwl#main', - 'container_image': 'arvados/jobs:'+arvados_cwl.__version__, - 'command': ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', - '--enable-reuse', '--on-error=continue', + 'container_image': '999999999999999999999999999999d3+99', + 'command': ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', '--debug', '--on-error=continue', '/var/lib/cwl/workflow/expect_arvworkflow.cwl#main', '/var/lib/cwl/cwl.input.json'], 'cwd': '/var/spool/cwl', 'runtime_constraints': { @@ -626,7 +885,9 @@ class TestSubmit(unittest.TestCase): 'vcpus': 1, 'ram': 1073741824 }, - "properties": {} + 'use_existing': True, + 'properties': {}, + 'secret_mounts': {} } stubs.api.container_requests().create.assert_called_with( @@ -674,7 +935,7 @@ class TestSubmit(unittest.TestCase): self.assertEqual(exited, 0) expect_container = { - 'priority': 1, + 'priority': 500, 'mounts': { '/var/spool/cwl': { 'writable': True, @@ -711,7 +972,11 @@ class TestSubmit(unittest.TestCase): 'id': '#submit_tool.cwl/x'} ], 'requirements': [ - {'dockerPull': 'debian:8', 'class': 'DockerRequirement'} + { + 'dockerPull': 'debian:8', + 'class': 'DockerRequirement', + "http://arvados.org/cwl#dockerCollectionPDH": "999999999999999999999999999999d4+99" + } ], 'id': '#submit_tool.cwl', 'outputs': [], @@ -728,12 +993,13 @@ class TestSubmit(unittest.TestCase): 'kind': 'json' } }, 'state': 'Committed', - 'owner_uuid': None, 'output_path': '/var/spool/cwl', 'name': 'a test workflow', - 'container_image': 'arvados/jobs:'+arvados_cwl.__version__, - 'command': ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', - '--enable-reuse', '--on-error=continue', + 'container_image': "999999999999999999999999999999d3+99", + 'command': ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=4', + '--enable-reuse', '--debug', '--on-error=continue', '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'], 'cwd': '/var/spool/cwl', 'runtime_constraints': { @@ -741,9 +1007,11 @@ class TestSubmit(unittest.TestCase): 'vcpus': 1, 'ram': 1073741824 }, - "properties": { + 'use_existing': True, + 'properties': { "template_uuid": "962eh-7fd4e-gkbzl62qqtfig37" - } + }, + 'secret_mounts': {} } stubs.api.container_requests().create.assert_called_with( @@ -773,6 +1041,85 @@ class TestSubmit(unittest.TestCase): stubs.expect_container_request_uuid + '\n') + @stubs + def test_submit_container_project(self, stubs): + project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz' + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--project-uuid="+project_uuid, + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["owner_uuid"] = project_uuid + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + "--eval-timeout=20", "--thread-count=4", + '--enable-reuse', '--debug', '--on-error=continue', + '--project-uuid='+project_uuid, + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @stubs + def test_submit_container_eval_timeout(self, stubs): + project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz' + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--eval-timeout=60", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=60.0', '--thread-count=4', + '--enable-reuse', '--debug', '--on-error=continue', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + + @stubs + def test_submit_container_thread_count(self, stubs): + project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz' + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--thread-count=20", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', + '--no-log-timestamps', '--disable-validate', + '--eval-timeout=20', '--thread-count=20', + '--enable-reuse', '--debug', '--on-error=continue', + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @stubs def test_submit_job_runner_image(self, stubs): capture_stdout = cStringIO.StringIO() @@ -785,7 +1132,7 @@ class TestSubmit(unittest.TestCase): except: logging.exception("") - stubs.expect_pipeline_instance["components"]["cwl-runner"]["runtime_constraints"]["docker_image"] = "arvados/jobs:123" + stubs.expect_pipeline_instance["components"]["cwl-runner"]["runtime_constraints"]["docker_image"] = "999999999999999999999999999999d5+99" expect_pipeline = copy.deepcopy(stubs.expect_pipeline_instance) stubs.api.pipeline_instances().create.assert_called_with( @@ -805,19 +1152,79 @@ class TestSubmit(unittest.TestCase): except: logging.exception("") - stubs.expect_container_spec["container_image"] = "arvados/jobs:123" + stubs.expect_container_spec["container_image"] = "999999999999999999999999999999d5+99" + + expect_container = copy.deepcopy(stubs.expect_container_spec) + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @stubs + def test_submit_priority(self, stubs): + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--priority=669", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + stubs.expect_container_spec["priority"] = 669 + + expect_container = copy.deepcopy(stubs.expect_container_spec) + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + + @stubs + def test_submit_wf_runner_resources(self, stubs): + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", + "tests/wf/submit_wf_runner_resources.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["runtime_constraints"] = { + "API": True, + "vcpus": 2, + "ram": 2000 * 2**20 + } + expect_container["name"] = "submit_wf_runner_resources.cwl" + expect_container["mounts"]["/var/lib/cwl/workflow.json"]["content"]["$graph"][1]["hints"] = [ + { + "class": "http://arvados.org/cwl#WorkflowRunnerResources", + "coresMin": 2, + "ramMin": 2000 + } + ] + expect_container["mounts"]["/var/lib/cwl/workflow.json"]["content"]["$graph"][0]["$namespaces"] = { + "arv": "http://arvados.org/cwl#", + } + stubs.api.container_requests().create.assert_called_with( body=JsonDiffMatcher(expect_container)) self.assertEqual(capture_stdout.getvalue(), stubs.expect_container_request_uuid + '\n') + def tearDown(self): + arvados_cwl.arvdocker.arv_docker_clear_cache() @mock.patch("arvados.commands.keepdocker.find_one_image_hash") - @mock.patch("cwltool.docker.get_image") + @mock.patch("cwltool.docker.DockerCommandLineJob.get_image") @mock.patch("arvados.api") def test_arvados_jobs_image(self, api, get_image, find_one_image_hash): + arvados_cwl.arvdocker.arv_docker_clear_cache() + arvrunner = mock.MagicMock() arvrunner.project_uuid = "" api.return_value = mock.MagicMock() @@ -843,9 +1250,237 @@ class TestSubmit(unittest.TestCase): "properties": "" }], "items_available": 1, "offset": 0},) arvrunner.api.collections().create().execute.return_value = {"uuid": ""} - self.assertEqual("arvados/jobs:"+arvados_cwl.__version__, + arvrunner.api.collections().get().execute.return_value = {"uuid": "zzzzz-4zz18-zzzzzzzzzzzzzzb", + "portable_data_hash": "9999999999999999999999999999999b+99"} + self.assertEqual("9999999999999999999999999999999b+99", arvados_cwl.runner.arvados_jobs_image(arvrunner, "arvados/jobs:"+arvados_cwl.__version__)) + + @stubs + def test_submit_secrets(self, stubs): + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", + "tests/wf/secret_wf.cwl", "tests/secret_test_job.yml"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + + expect_container = { + "command": [ + "arvados-cwl-runner", + "--local", + "--api=containers", + "--no-log-timestamps", + "--disable-validate", + "--eval-timeout=20", + '--thread-count=4', + "--enable-reuse", + '--debug', + "--on-error=continue", + "/var/lib/cwl/workflow.json#main", + "/var/lib/cwl/cwl.input.json" + ], + "container_image": "999999999999999999999999999999d3+99", + "cwd": "/var/spool/cwl", + "mounts": { + "/var/lib/cwl/cwl.input.json": { + "content": { + "pw": { + "$include": "/secrets/s0" + } + }, + "kind": "json" + }, + "/var/lib/cwl/workflow.json": { + "content": { + "$graph": [ + { + "$namespaces": { + "cwltool": "http://commonwl.org/cwltool#" + }, + "arguments": [ + "md5sum", + "example.conf" + ], + "class": "CommandLineTool", + "hints": [ + { + "class": "http://commonwl.org/cwltool#Secrets", + "secrets": [ + "#secret_job.cwl/pw" + ] + } + ], + "id": "#secret_job.cwl", + "inputs": [ + { + "id": "#secret_job.cwl/pw", + "type": "string" + } + ], + "outputs": [ + { + "id": "#secret_job.cwl/out", + "type": "stdout" + } + ], + "stdout": "hashed_example.txt", + "requirements": [ + { + "class": "InitialWorkDirRequirement", + "listing": [ + { + "entry": "username: user\npassword: $(inputs.pw)\n", + "entryname": "example.conf" + } + ] + } + ] + }, + { + "class": "Workflow", + "hints": [ + { + "class": "DockerRequirement", + "dockerPull": "debian:8", + "http://arvados.org/cwl#dockerCollectionPDH": "999999999999999999999999999999d4+99" + }, + { + "class": "http://commonwl.org/cwltool#Secrets", + "secrets": [ + "#main/pw" + ] + } + ], + "id": "#main", + "inputs": [ + { + "id": "#main/pw", + "type": "string" + } + ], + "outputs": [ + { + "id": "#main/out", + "outputSource": "#main/step1/out", + "type": "File" + } + ], + "steps": [ + { + "id": "#main/step1", + "in": [ + { + "id": "#main/step1/pw", + "source": "#main/pw" + } + ], + "out": [ + "#main/step1/out" + ], + "run": "#secret_job.cwl" + } + ] + } + ], + "cwlVersion": "v1.0" + }, + "kind": "json" + }, + "/var/spool/cwl": { + "kind": "collection", + "writable": True + }, + "stdout": { + "kind": "file", + "path": "/var/spool/cwl/cwl.output.json" + } + }, + "name": "secret_wf.cwl", + "output_path": "/var/spool/cwl", + "priority": 500, + "properties": {}, + "runtime_constraints": { + "API": True, + "ram": 1073741824, + "vcpus": 1 + }, + "secret_mounts": { + "/secrets/s0": { + "content": "blorp", + "kind": "text" + } + }, + "state": "Committed", + "use_existing": True + } + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @stubs + def test_submit_request_uuid(self, stubs): + stubs.expect_container_request_uuid = "zzzzz-xvhdp-yyyyyyyyyyyyyyy" + + stubs.api.container_requests().update().execute.return_value = { + "uuid": stubs.expect_container_request_uuid, + "container_uuid": "zzzzz-dz642-zzzzzzzzzzzzzzz", + "state": "Queued" + } + + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--submit-request-uuid=zzzzz-xvhdp-yyyyyyyyyyyyyyy", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + stubs.api.container_requests().update.assert_called_with( + uuid="zzzzz-xvhdp-yyyyyyyyyyyyyyy", body=JsonDiffMatcher(stubs.expect_container_spec), cluster_id="zzzzz") + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @stubs + def test_submit_container_cluster_id(self, stubs): + capture_stdout = cStringIO.StringIO() + stubs.api._rootDesc["remoteHosts"]["zbbbb"] = "123" + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--submit-runner-cluster=zbbbb", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container), cluster_id="zbbbb") + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + + @stubs + def test_submit_validate_cluster_id(self, stubs): + capture_stdout = cStringIO.StringIO() + stubs.api._rootDesc["remoteHosts"]["zbbbb"] = "123" + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--submit-runner-cluster=zcccc", + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 1) + + class TestCreateTemplate(unittest.TestCase): existing_template_uuid = "zzzzz-d1hrv-validworkfloyml" @@ -854,7 +1489,7 @@ class TestCreateTemplate(unittest.TestCase): 'dataclass': 'File', 'required': True, 'type': 'File', - 'value': '99999999999999999999999999999992+99/blorp.txt', + 'value': '169f39d466a5438ac4a90e779bf750c7+53/blorp.txt', } expect_component['script_parameters']['y'] = { 'dataclass': 'Collection', @@ -973,7 +1608,8 @@ class TestCreateTemplate(unittest.TestCase): class TestCreateWorkflow(unittest.TestCase): existing_workflow_uuid = "zzzzz-7fd4e-validworkfloyml" - expect_workflow = open("tests/wf/expect_packed.cwl").read() + expect_workflow = StripYAMLComments( + open("tests/wf/expect_packed.cwl").read()) @stubs def test_create(self, stubs): @@ -1106,17 +1742,48 @@ class TestCreateWorkflow(unittest.TestCase): self.existing_workflow_uuid + '\n') + @stubs + def test_create_collection_per_tool(self, stubs): + project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz' + + capture_stdout = cStringIO.StringIO() + + exited = arvados_cwl.main( + ["--create-workflow", "--debug", + "--api=containers", + "--project-uuid", project_uuid, + "tests/collection_per_tool/collection_per_tool.cwl"], + capture_stdout, sys.stderr, api_client=stubs.api) + self.assertEqual(exited, 0) + + toolfile = "tests/collection_per_tool/collection_per_tool_packed.cwl" + expect_workflow = StripYAMLComments(open(toolfile).read()) + + body = { + "workflow": { + "owner_uuid": project_uuid, + "name": "collection_per_tool.cwl", + "description": "", + "definition": expect_workflow, + } + } + stubs.api.workflows().create.assert_called_with( + body=JsonDiffMatcher(body)) + + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_workflow_uuid + '\n') + class TestTemplateInputs(unittest.TestCase): expect_template = { "components": { "inputs_test.cwl": { 'runtime_constraints': { - 'docker_image': 'arvados/jobs:'+arvados_cwl.__version__, + 'docker_image': '999999999999999999999999999999d3+99', 'min_ram_mb_per_node': 1024 }, 'script_parameters': { 'cwl:tool': - '99999999999999999999999999999992+99/workflow.cwl#main', + 'a2de777156fb700f1363b1f2e370adca+60/workflow.cwl#main', 'optionalFloatInput': None, 'fileInput': { 'type': 'File', @@ -1176,8 +1843,8 @@ class TestTemplateInputs(unittest.TestCase): expect_template = copy.deepcopy(self.expect_template) params = expect_template[ "components"]["inputs_test.cwl"]["script_parameters"] - params["fileInput"]["value"] = '99999999999999999999999999999992+99/blorp.txt' - params["cwl:tool"] = '99999999999999999999999999999994+99/workflow.cwl#main' + params["fileInput"]["value"] = '169f39d466a5438ac4a90e779bf750c7+53/blorp.txt' + params["cwl:tool"] = 'a2de777156fb700f1363b1f2e370adca+60/workflow.cwl#main' params["floatInput"]["value"] = 1.234 params["boolInput"]["value"] = True