X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/2d7610520e4d1ab289899821bf4d885b77a1e327..5aa470ef5aa86f7946be8d379e409deacfabba67:/docker/bcbio-nextgen/Dockerfile diff --git a/docker/bcbio-nextgen/Dockerfile b/docker/bcbio-nextgen/Dockerfile index e3e705b04d..8f6e7745c5 100644 --- a/docker/bcbio-nextgen/Dockerfile +++ b/docker/bcbio-nextgen/Dockerfile @@ -1,19 +1,29 @@ +# Install Arvados SDK into bcbio-nextgen Docker image. +# +# To build bcbio-nextgen: +# +# $ git clone https://github.com/chapmanb/bcbio-nextgen.git +# $ cd bcbio-nextgen +# $ docker build +# $ docker tag bcbio-nextgen +# + FROM bcbio-nextgen MAINTAINER Peter Amstutz USER root -ADD generated/arvados.tar.gz /usr/src/arvados/ -ENV GEM_HOME /usr/local/rvm/gems/ruby-2.1.0 -ENV GEM_PATH /usr/local/rvm/gems/ruby-2.1.0:/usr/local/rvm/gems/ruby-2.1.0@global -ENV PATH /usr/local/rvm/gems/ruby-2.1.0/bin:/usr/local/rvm/gems/ruby-2.1.0@global/bin:/usr/local/rvm/rubies/ruby-2.1.0/bin:/usr/local/rvm/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin - # Install Ruby 2.1.0 RUN apt-get remove --quiet --assume-yes ruby && \ curl -L https://get.rvm.io | bash -s stable && \ /usr/local/rvm/bin/rvm install 2.1.0 && \ /bin/mkdir -p /usr/src/arvados +ADD generated/arvados.tar.gz /usr/src/arvados/ +ENV GEM_HOME /usr/local/rvm/gems/ruby-2.1.0 +ENV GEM_PATH /usr/local/rvm/gems/ruby-2.1.0:/usr/local/rvm/gems/ruby-2.1.0@global +ENV PATH /usr/local/rvm/gems/ruby-2.1.0/bin:/usr/local/rvm/gems/ruby-2.1.0@global/bin:/usr/local/rvm/rubies/ruby-2.1.0/bin:/usr/local/rvm/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + # Install dependencies and set up system. # The FUSE packages help ensure that we can install the Python SDK (arv-mount). RUN /usr/bin/apt-get update && \