X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/2b7d05cdf4e054024607b859bd6fb41e04855bfa..7d5593ff7e42845c03e35ba732f308ad00491a56:/doc/user/cwl/cwl-run-options.html.textile.liquid

diff --git a/doc/user/cwl/cwl-run-options.html.textile.liquid b/doc/user/cwl/cwl-run-options.html.textile.liquid
index 94e46ae1bc..703ec89139 100644
--- a/doc/user/cwl/cwl-run-options.html.textile.liquid
+++ b/doc/user/cwl/cwl-run-options.html.textile.liquid
@@ -38,34 +38,40 @@ table(table table-bordered table-condensed).
 |==--output-name OUTPUT_NAME==|Name to use for collection that stores the final output.|
 |==--output-tags OUTPUT_TAGS==|Tags for the final output collection separated by commas, e.g., =='--output-tags tag0,tag1,tag2'==.|
 |==--ignore-docker-for-reuse==|Ignore Docker image version when deciding whether to reuse past containers.|
-|==--submit==|              Submit workflow runner to Arvados to manage the workflow (default).|
-|==--local==|               Run workflow on local host (still submits containers to Arvados).|
+|==--submit==|              Submit workflow to run on Arvados.|
+|==--local==|               Run workflow on local host (submits containers to Arvados).|
 |==--create-template==|     (Deprecated) synonym for --create-workflow.|
 |==--create-workflow==|     Register an Arvados workflow that can be run from Workbench|
-|==--update-workflow== UUID|Update an existing Arvados workflow or pipeline template with the given UUID.|
+|==--update-workflow== UUID|Update an existing Arvados workflow with the given UUID.|
 |==--wait==|                After submitting workflow runner, wait for completion.|
 |==--no-wait==|             Submit workflow runner and exit.|
 |==--log-timestamps==|      Prefix logging lines with timestamp|
 |==--no-log-timestamps==|   No timestamp on logging lines|
 |==--compute-checksum==|    Compute checksum of contents while collecting outputs|
-|==--submit-runner-ram== SUBMIT_RUNNER_RAM|RAM (in MiB) required for the workflow runner (default 1024)|
-|==--submit-runner-image== SUBMIT_RUNNER_IMAGE|Docker image for workflow runner|
+|==--submit-runner-ram== SUBMIT_RUNNER_RAM|RAM (in MiB) required for the workflow runner job (default 1024)|
+|==--submit-runner-image== SUBMIT_RUNNER_IMAGE|Docker image for workflow runner job|
 |==--always-submit-runner==|When invoked with --submit --wait, always submit a runner to manage the workflow, even when only running a single CommandLineTool|
 |==--match-submitter-images==|Where Arvados has more than one Docker image of the same name, use image from the Docker instance on the submitting node.|
 |==--submit-request-uuid== UUID|Update and commit to supplied container request instead of creating a new one.|
 |==--submit-runner-cluster== CLUSTER_ID|Submit workflow runner to a remote cluster|
-|==--name NAME==|Name to use for workflow execution instance.|
+|==--collection-cache-size== COLLECTION_CACHE_SIZE|Collection cache size (in MiB, default 256).|
+|==--name== NAME|Name to use for workflow execution instance.|
 |==--on-error== {stop,continue}|Desired workflow behavior when a step fails.  One of 'stop' (do not submit any more steps) or 'continue' (may submit other steps that are not downstream from the error). Default is 'continue'.|
-|==--enable-dev==|Enable loading and running development versions of CWL spec.|
-|==--storage-classes== STORAGE_CLASSES|Specify comma separated list of storage classes to be used when saving the final workflow output to Keep.|
-|==--intermediate-storage-classes== STORAGE_CLASSES|Specify comma separated list of storage classes to be used when intermediate workflow output to Keep.|
+|==--enable-dev==|Enable loading and running development versions of the CWL standards.|
+|==--storage-classes== STORAGE_CLASSES|Specify comma separated list of storage classes to be used when saving final workflow output to Keep.|
+|==--intermediate-storage-classes== INTERMEDIATE_STORAGE_CLASSES|Specify comma separated list of storage classes to be used when saving intermediate workflow output to Keep.|
 |==--intermediate-output-ttl== N|If N > 0, intermediate output collections will be trashed N seconds after creation. Default is 0 (don't trash).|
 |==--priority== PRIORITY|Workflow priority (range 1..1000, higher has precedence over lower)|
-|==--thread-count== THREAD_COUNT|Number of threads to use for container submit and output collection.|
+|==--thread-count== THREAD_COUNT|Number of threads to use for job submit and output collection.|
 |==--http-timeout== HTTP_TIMEOUT|API request timeout in seconds. Default is 300 seconds (5 minutes).|
-|==--enable-preemptible==|Use preemptible instances. Control individual steps with "arv:UsePreemptible":cwl-extensions.html#UsePreemptible hint.|
+|==--defer-downloads==|When submitting a workflow, defer downloading HTTP URLs to workflow launch instead of downloading to Keep before submit.|
+|==--varying-url-params== VARYING_URL_PARAMS|A comma separated list of URL query parameters that should be ignored when storing HTTP URLs in Keep.|
+|==--prefer-cached-downloads==|If a HTTP URL is found in Keep, skip upstream URL freshness check (will not notice if the upstream has changed, but also not error if upstream is unavailable).|
+|==--enable-preemptible==|Use preemptible instances. Control individual steps with arv:UsePreemptible hint.|
 |==--disable-preemptible==|Don't use preemptible instances.|
-|==--skip-schemas==|Skip loading of extension schemas (the $schemas section).|
+|==--copy-deps==|         Copy dependencies into the destination project.|
+|==--no-copy-deps==|      Leave dependencies where they are.|
+|==--skip-schemas==|      Skip loading of schemas|
 |==--trash-intermediate==|Immediately trash intermediate outputs on workflow success.|
 |==--no-trash-intermediate==|Do not trash intermediate outputs (default).|