X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/2a21ea7ddc0739f9ce54589600be7f136ddd83fa..0783caa882a7c45c24b5a054957a1568ad55ed99:/lib/crunchrun/singularity.go

diff --git a/lib/crunchrun/singularity.go b/lib/crunchrun/singularity.go
index f154728c70..1da401f859 100644
--- a/lib/crunchrun/singularity.go
+++ b/lib/crunchrun/singularity.go
@@ -16,6 +16,7 @@ import (
 	"regexp"
 	"sort"
 	"strconv"
+	"strings"
 	"syscall"
 	"time"
 
@@ -43,7 +44,13 @@ func newSingularityExecutor(logf func(string, ...interface{})) (*singularityExec
 	}, nil
 }
 
-func (e *singularityExecutor) Runtime() string { return "singularity" }
+func (e *singularityExecutor) Runtime() string {
+	buf, err := exec.Command("singularity", "--version").CombinedOutput()
+	if err != nil {
+		return "singularity (unknown version)"
+	}
+	return strings.TrimSuffix(string(buf), "\n")
+}
 
 func (e *singularityExecutor) getOrCreateProject(ownerUuid string, name string, containerClient *arvados.Client) (*arvados.Group, error) {
 	var gp arvados.GroupList
@@ -281,7 +288,7 @@ func (e *singularityExecutor) execCmd(path string) *exec.Cmd {
 	for _, path := range binds {
 		mount := e.spec.BindMounts[path]
 		if path == e.spec.Env["HOME"] {
-			// Singularity treates $HOME as special case
+			// Singularity treats $HOME as special case
 			args = append(args, "--home", mount.HostPath+":"+path)
 		} else {
 			args = append(args, "--bind", mount.HostPath+":"+path+":"+readonlyflag[mount.ReadOnly])
@@ -295,8 +302,8 @@ func (e *singularityExecutor) execCmd(path string) *exec.Cmd {
 	env := make([]string, 0, len(e.spec.Env))
 	for k, v := range e.spec.Env {
 		if k == "HOME" {
-			// Singularity treates $HOME as special case, this is handled
-			// with --home above
+			// Singularity treats $HOME as special case,
+			// this is handled with --home above
 			continue
 		}
 		env = append(env, "SINGULARITYENV_"+k+"="+v)
@@ -310,6 +317,14 @@ func (e *singularityExecutor) execCmd(path string) *exec.Cmd {
 		// us to select specific devices we need to propagate that.
 		env = append(env, "SINGULARITYENV_CUDA_VISIBLE_DEVICES="+cudaVisibleDevices)
 	}
+	// Singularity's default behavior is to evaluate each
+	// SINGULARITYENV_* env var with a shell as a double-quoted
+	// string and pass the result to the contained
+	// process. Singularity 3.10+ has an option to pass env vars
+	// through literally without evaluating, which is what we
+	// want. See https://github.com/sylabs/singularity/pull/704
+	// and https://dev.arvados.org/issues/19081
+	env = append(env, "SINGULARITY_NO_EVAL=1")
 
 	args = append(args, e.imageFilename)
 	args = append(args, e.spec.Command...)