X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/21bf21abe900918a7882f7e43c102418e04159be..01693774dffd5ad5dd5313f24a5933f44b0e069d:/sdk/cwl/tests/test_job.py diff --git a/sdk/cwl/tests/test_job.py b/sdk/cwl/tests/test_job.py index 4473b88ca0..20efe15139 100644 --- a/sdk/cwl/tests/test_job.py +++ b/sdk/cwl/tests/test_job.py @@ -19,6 +19,7 @@ from schema_salad.ref_resolver import Loader from schema_salad.sourceline import cmap from .mock_discovery import get_rootDesc from .matcher import JsonDiffMatcher, StripYAMLComments +from .test_container import CollectionMock if not os.getenv('ARVADOS_DEBUG'): logging.getLogger('arvados.cwl-runner').setLevel(logging.WARN) @@ -388,7 +389,8 @@ class TestWorkflow(unittest.TestCase): tool, metadata = loadingContext.loader.resolve_ref("tests/wf/scatter2.cwl") metadata["cwlVersion"] = tool["cwlVersion"] - mockcollection().portable_data_hash.return_value = "99999999999999999999999999999999+118" + mockc = mock.MagicMock() + mockcollection.side_effect = lambda *args, **kwargs: CollectionMock(mockc, *args, **kwargs) mockcollectionreader().find.return_value = arvados.arvfile.ArvadosFile(mock.MagicMock(), "token.txt") arvtool = arvados_cwl.ArvadosWorkflow(runner, tool, loadingContext) @@ -412,8 +414,8 @@ class TestWorkflow(unittest.TestCase): 'HOME': '$(task.outdir)', 'TMPDIR': '$(task.tmpdir)'}, 'task.vwd': { - 'workflow.cwl': '$(task.keep)/99999999999999999999999999999999+118/workflow.cwl', - 'cwl.input.yml': '$(task.keep)/99999999999999999999999999999999+118/cwl.input.yml' + 'workflow.cwl': '$(task.keep)/99999999999999999999999999999996+99/workflow.cwl', + 'cwl.input.yml': '$(task.keep)/99999999999999999999999999999996+99/cwl.input.yml' }, 'command': [u'cwltool', u'--no-container', u'--move-outputs', u'--preserve-entire-environment', u'workflow.cwl#main', u'cwl.input.yml'], 'task.stdout': 'cwl.output.json'}]}, @@ -430,8 +432,8 @@ class TestWorkflow(unittest.TestCase): ['docker_image_locator', 'in docker', 'arvados/jobs']], find_or_create=True) - mockcollection().open().__enter__().write.assert_has_calls([mock.call(subwf)]) - mockcollection().open().__enter__().write.assert_has_calls([mock.call( + mockc.open().__enter__().write.assert_has_calls([mock.call(subwf)]) + mockc.open().__enter__().write.assert_has_calls([mock.call( '''{ "fileblub": { "basename": "token.txt", @@ -469,7 +471,7 @@ class TestWorkflow(unittest.TestCase): tool, metadata = loadingContext.loader.resolve_ref("tests/wf/echo-wf.cwl") metadata["cwlVersion"] = tool["cwlVersion"] - mockcollection().portable_data_hash.return_value = "99999999999999999999999999999999+118" + mockcollection.side_effect = lambda *args, **kwargs: CollectionMock(mock.MagicMock(), *args, **kwargs) arvtool = arvados_cwl.ArvadosWorkflow(runner, tool, loadingContext) arvtool.formatgraph = None @@ -491,8 +493,8 @@ class TestWorkflow(unittest.TestCase): 'HOME': '$(task.outdir)', 'TMPDIR': '$(task.tmpdir)'}, 'task.vwd': { - 'workflow.cwl': '$(task.keep)/99999999999999999999999999999999+118/workflow.cwl', - 'cwl.input.yml': '$(task.keep)/99999999999999999999999999999999+118/cwl.input.yml' + 'workflow.cwl': '$(task.keep)/99999999999999999999999999999996+99/workflow.cwl', + 'cwl.input.yml': '$(task.keep)/99999999999999999999999999999996+99/cwl.input.yml' }, 'command': [u'cwltool', u'--no-container', u'--move-outputs', u'--preserve-entire-environment', u'workflow.cwl#main', u'cwl.input.yml'], 'task.stdout': 'cwl.output.json'}]},