X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/1c3fcbc97db70680109aba244287df0231285648..dee20da037920692508446dc5f10d71ee3ab1524:/doc/install/singularity.html.textile.liquid diff --git a/doc/install/singularity.html.textile.liquid b/doc/install/singularity.html.textile.liquid index ca3ec8dfea..1f38253958 100644 --- a/doc/install/singularity.html.textile.liquid +++ b/doc/install/singularity.html.textile.liquid @@ -9,20 +9,25 @@ Copyright (C) The Arvados Authors. All rights reserved. SPDX-License-Identifier: CC-BY-SA-3.0 {% endcomment %} -Arvados can be configured to use Singularity instead of Docker to execute containers on cloud nodes or a SLURM/LSF cluster. +Arvados can be configured to use "Singularity":https://sylabs.io/singularity/ instead of Docker to execute containers on cloud nodes or a SLURM/LSF cluster. Singularity may be preferable due to its simpler installation and lack of long-running daemon process and special system users/groups. Please note: * *Singularity support is currently considered experimental.* * Even when using the singularity runtime, users' container images are expected to be saved in Docker format using @arv keep docker@. Arvados converts the Docker image to Singularity format (@.sif@) at runtime as needed. Specifying a @.sif@ file as an image when submitting a container request is not yet supported. -* Singularity does not limit the amount of memory available in a container. Each container will have access to all memory on the host where it runs. -* Programs running in containers may behave differently due to differences between Singularity and Docker, _e.g._, the root (image) filesystem is read-only in a Singularity container. +* Singularity does not limit the amount of memory available in a container. Each container will have access to all memory on the host where it runs, unless memory use is restricted by SLURM/LSF. +* Programs running in containers may behave differently due to differences between Singularity and Docker. +** The root (image) filesystem is read-only in a Singularity container. Programs that attempt to write outside a designated output or temporary directory are likely to fail. +** The Docker ENTRYPOINT instruction is ignored. * Arvados is currently tested with Singularity version 3.5.2. -To use singularity, first make sure Singularity is installed on your cloud worker image or SLURM/LSF compute nodes as applicable. +To use singularity, first make sure "Singularity is installed":https://sylabs.io/guides/3.5/user-guide/quick_start.html on your cloud worker image or SLURM/LSF compute nodes as applicable. Note @squashfs-tools@ is required.
$ singularity version
 3.5.2
+$ mksquashfs -version
+mksquashfs version 4.3-git (2014/06/09)
+[...]
 
@@ -34,4 +39,4 @@ Then update @Containers.RuntimeEngine@ in your cluster configuration: -Restart your dispatcher (@crunch-dispatch-slurm@ or @arvados-dispatch-cloud@) after updating your configuration file. +Restart your dispatcher (@crunch-dispatch-slurm@, @arvados-dispatch-cloud@, or @arvados-dispatch-lsf@) after updating your configuration file.