X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/1a169a434494175b208d0d5055bb42333d9b64b9..7fec33bab2fb68405a1c641d3cd956d21487e14b:/sdk/cwl/arvados_cwl/__init__.py

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 4722433972..fd3b7a5d16 100644
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -28,10 +28,10 @@ from cwltool.utils import adjustFileObjs, adjustDirObjs, get_listing
 
 import arvados
 import arvados.config
+import arvados.logging
 from arvados.keep import KeepClient
 from arvados.errors import ApiError
 import arvados.commands._util as arv_cmd
-from arvados.api import OrderedJsonModel
 
 from .perf import Perf
 from ._version import __version__
@@ -123,6 +123,8 @@ def arg_parser():  # type: () -> argparse.ArgumentParser
     exgroup.add_argument("--create-workflow", action="store_true", help="Register an Arvados workflow that can be run from Workbench")
     exgroup.add_argument("--update-workflow", metavar="UUID", help="Update an existing Arvados workflow with the given UUID.")
 
+    exgroup.add_argument("--print-keep-deps", action="store_true", help="To assist copying, print a list of Keep collections that this workflow depends on.")
+
     exgroup = parser.add_mutually_exclusive_group()
     exgroup.add_argument("--wait", action="store_true", help="After submitting workflow runner, wait for completion.",
                         default=True, dest="wait")
@@ -324,7 +326,9 @@ def main(args=sys.argv[1:],
             return 1
         arvargs.work_api = want_api
 
-    if (arvargs.create_workflow or arvargs.update_workflow) and not arvargs.job_order:
+    workflow_op = arvargs.create_workflow or arvargs.update_workflow or arvargs.print_keep_deps
+
+    if workflow_op and not arvargs.job_order:
         job_order_object = ({}, "")
 
     add_arv_hints()
@@ -337,7 +341,6 @@ def main(args=sys.argv[1:],
         if api_client is None:
             api_client = arvados.safeapi.ThreadSafeApiCache(
                 api_params={
-                    'model': OrderedJsonModel(),
                     'num_retries': arvargs.retries,
                     'timeout': arvargs.http_timeout,
                 },
@@ -377,10 +380,20 @@ def main(args=sys.argv[1:],
     logger.setLevel(logging.INFO)
     logging.getLogger('arvados').setLevel(logging.INFO)
     logging.getLogger('arvados.keep').setLevel(logging.WARNING)
+    # API retries are filtered to the INFO level and can be noisy, but as long as
+    # they succeed we don't need to see warnings about it.
+    googleapiclient_http_logger = logging.getLogger('googleapiclient.http')
+    googleapiclient_http_logger.addFilter(arvados.logging.GoogleHTTPClientFilter())
+    googleapiclient_http_logger.setLevel(logging.WARNING)
 
     if arvargs.debug:
         logger.setLevel(logging.DEBUG)
         logging.getLogger('arvados').setLevel(logging.DEBUG)
+        # In debug mode show logs about retries, but we arn't
+        # debugging the google client so we don't need to see
+        # everything.
+        googleapiclient_http_logger.setLevel(logging.NOTSET)
+        logging.getLogger('googleapiclient').setLevel(logging.INFO)
 
     if arvargs.quiet:
         logger.setLevel(logging.WARN)
@@ -407,9 +420,11 @@ def main(args=sys.argv[1:],
         # unit tests.
         stdout = None
 
+    executor.loadingContext.default_docker_image = arvargs.submit_runner_image or "arvados/jobs:"+__version__
+
     if arvargs.workflow.startswith("arvwf:") or workflow_uuid_pattern.match(arvargs.workflow) or arvargs.workflow.startswith("keep:"):
         executor.loadingContext.do_validate = False
-        if arvargs.submit:
+        if arvargs.submit and not workflow_op:
             executor.fast_submit = True
 
     return cwltool.main.main(args=arvargs,
@@ -422,4 +437,4 @@ def main(args=sys.argv[1:],
                              custom_schema_callback=add_arv_hints,
                              loadingContext=executor.loadingContext,
                              runtimeContext=executor.toplevel_runtimeContext,
-                             input_required=not (arvargs.create_workflow or arvargs.update_workflow))
+                             input_required=not workflow_op)