X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/190e6d0b21800dcaec1c5d0b2346d2c2bf43eeea..42c20b25e1325124b88e3b9b285544dc41122b56:/apps/workbench/app/controllers/container_requests_controller.rb

diff --git a/apps/workbench/app/controllers/container_requests_controller.rb b/apps/workbench/app/controllers/container_requests_controller.rb
index b286a9456e..be463b022c 100644
--- a/apps/workbench/app/controllers/container_requests_controller.rb
+++ b/apps/workbench/app/controllers/container_requests_controller.rb
@@ -1,18 +1,88 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
 class ContainerRequestsController < ApplicationController
-  skip_around_filter :require_thread_api_token, if: proc { |ctrl|
-    Rails.configuration.anonymous_user_token and
+  skip_around_action :require_thread_api_token, if: proc { |ctrl|
+    !Rails.configuration.Users.AnonymousUserToken.empty? and
     'show' == ctrl.action_name
   }
 
+  def generate_provenance(cr)
+    return if params['tab_pane'] != "Provenance"
+
+    nodes = {}
+    child_crs = []
+    col_uuids = []
+    col_pdhs = []
+    col_uuids << cr[:output_uuid] if cr[:output_uuid]
+    col_pdhs += ProvenanceHelper::cr_input_pdhs(cr)
+
+    # Search for child CRs
+    if cr[:container_uuid]
+      child_crs = ContainerRequest.where(requesting_container_uuid: cr[:container_uuid]).with_count("none")
+
+      child_crs.each do |child|
+        nodes[child[:uuid]] = child
+        col_uuids << child[:output_uuid] if child[:output_uuid]
+        col_pdhs += ProvenanceHelper::cr_input_pdhs(child)
+      end
+    end
+
+    if nodes.length == 0
+      nodes[cr[:uuid]] = cr
+    end
+
+    pdh_to_col = {} # Indexed by PDH
+    output_pdhs = []
+
+    # Batch requests to get all related collections
+    # First fetch output collections by UUID.
+    Collection.filter([['uuid', 'in', col_uuids.uniq]]).with_count("none").each do |c|
+      output_pdhs << c[:portable_data_hash]
+      pdh_to_col[c[:portable_data_hash]] = c
+      nodes[c[:uuid]] = c
+    end
+    # Next, get input collections by PDH.
+    Collection.filter(
+      [['portable_data_hash', 'in', col_pdhs - output_pdhs]]).with_count("none").each do |c|
+      nodes[c[:portable_data_hash]] = c
+    end
+
+    @svg = ProvenanceHelper::create_provenance_graph(
+      nodes, "provenance_svg",
+      {
+        :request => request,
+        :pdh_to_uuid => pdh_to_col,
+      }
+    )
+  end
+
   def show_pane_list
-    panes = %w(Status Log Advanced)
+    panes = %w(Status Log Provenance Advanced)
     if @object.andand.state == 'Uncommitted'
-      panes = %w(Inputs) + panes - %w(Log)
+      panes = %w(Inputs) + panes - %w(Log Provenance)
     end
     panes
   end
 
+  def show
+    generate_provenance(@object)
+    super
+  end
+
   def cancel
+    if @object.container_uuid
+      c = Container.select(['state']).where(uuid: @object.container_uuid).with_count("none").first
+      if c && c.state != 'Running'
+        # If the container hasn't started yet, setting priority=0
+        # leaves our request in "Committed" state and doesn't cancel
+        # the container (even if no other requests are giving it
+        # priority). To avoid showing this container request as "on
+        # hold" after hitting the Cancel button, set state=Final too.
+        @object.state = 'Final'
+      end
+    end
     @object.update_attributes! priority: 0
     if params[:return_to]
       redirect_to params[:return_to]
@@ -45,12 +115,27 @@ class ContainerRequestsController < ApplicationController
             c = Collection.find(re[1])
             input_obj[param_id] = {"class" => primary_type,
                                    "location" => "keep:#{c.portable_data_hash}#{re[4]}",
-                                   "arv:collection" => input_obj[param_id]}
+                                   "http://arvados.org/cwl#collectionUUID" => re[1]}
           end
         end
       end
     end
     params[:merge] = true
+
+    if !@updates[:reuse_steps].nil?
+      if @updates[:reuse_steps] == "false"
+        @updates[:reuse_steps] = false
+      end
+      @updates[:command] ||= @object.command
+      @updates[:command] -= ["--disable-reuse", "--enable-reuse"]
+      if @updates[:reuse_steps]
+        @updates[:command].insert(1, "--enable-reuse")
+      else
+        @updates[:command].insert(1, "--disable-reuse")
+      end
+      @updates.delete(:reuse_steps)
+    end
+
     begin
       super
     rescue => e
@@ -64,7 +149,52 @@ class ContainerRequestsController < ApplicationController
 
     @object = ContainerRequest.new
 
-    @object.command = src.command
+    # set owner_uuid to that of source, provided it is a project and writable by current user
+    if params[:work_unit].andand[:owner_uuid]
+      @object.owner_uuid = src.owner_uuid = params[:work_unit][:owner_uuid]
+    else
+      current_project = Group.find(src.owner_uuid) rescue nil
+      if (current_project && current_project.writable_by.andand.include?(current_user.uuid))
+        @object.owner_uuid = src.owner_uuid
+      end
+    end
+
+    command = src.command
+    if command[0] == 'arvados-cwl-runner'
+      command.each_with_index do |arg, i|
+        if arg.start_with? "--project-uuid="
+          command[i] = "--project-uuid=#{@object.owner_uuid}"
+        end
+      end
+      command -= ["--disable-reuse", "--enable-reuse"]
+      command.insert(1, '--enable-reuse')
+    end
+
+    if params[:use_existing] == "false"
+      params[:use_existing] = false
+    elsif params[:use_existing] == "true"
+      params[:use_existing] = true
+    end
+
+    if params[:use_existing] || params[:use_existing].nil?
+      # If nil, reuse workflow steps but not the workflow runner.
+      @object.use_existing = !!params[:use_existing]
+
+      # Pass the correct argument to arvados-cwl-runner command.
+      if command[0] == 'arvados-cwl-runner'
+        command -= ["--disable-reuse", "--enable-reuse"]
+        command.insert(1, '--enable-reuse')
+      end
+    else
+      @object.use_existing = false
+      # Pass the correct argument to arvados-cwl-runner command.
+      if command[0] == 'arvados-cwl-runner'
+        command -= ["--disable-reuse", "--enable-reuse"]
+        command.insert(1, '--disable-reuse')
+      end
+    end
+
+    @object.command = command
     @object.container_image = src.container_image
     @object.cwd = src.cwd
     @object.description = src.description
@@ -77,14 +207,13 @@ class ContainerRequestsController < ApplicationController
     @object.runtime_constraints = src.runtime_constraints
     @object.scheduling_parameters = src.scheduling_parameters
     @object.state = 'Uncommitted'
-    @object.use_existing = false
 
-    # set owner_uuid to that of source, provided it is a project and writable by current user
-    current_project = Group.find(src.owner_uuid) rescue nil
-    if (current_project && current_project.writable_by.andand.include?(current_user.uuid))
-      @object.owner_uuid = src.owner_uuid
-    end
+    super
+  end
 
+  def index
+    @limit = 20
     super
   end
+
 end