X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/15635ff9fa2c964fb45467c9846ed92f7f6388b9..feb463839301b0b596089e48a981660365d2c4a7:/sdk/cwl/arvados_cwl/arvcontainer.py diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py index 4c1915fe73..08da4ca16e 100644 --- a/sdk/cwl/arvados_cwl/arvcontainer.py +++ b/sdk/cwl/arvados_cwl/arvcontainer.py @@ -62,7 +62,7 @@ class ArvadosContainer(object): } if self.generatefiles["listing"]: - raise UnsupportedRequirement("Generate files not supported") + raise UnsupportedRequirement("InitialWorkDirRequirement not supported with --api=containers") container_request["environment"] = {"TMPDIR": self.tmpdir, "HOME": self.outdir} if self.environment: @@ -226,7 +226,7 @@ class RunnerContainer(Runner): }, "runtime_constraints": { "vcpus": 1, - "ram": 1024*1024*256, + "ram": 1024*1024 * self.submit_runner_ram, "API": True } } @@ -241,9 +241,23 @@ class RunnerContainer(Runner): ).execute(num_retries=self.arvrunner.num_retries) self.uuid = response["uuid"] - self.arvrunner.processes[response["uuid"]] = response["uuid"] + self.arvrunner.processes[response["uuid"]] = self logger.info("Submitted container %s", response["uuid"]) if response["state"] == "Final": self.done(response) + + def done(self, record): + try: + container = self.arvrunner.api.containers().get( + uuid=record["container_uuid"] + ).execute(num_retries=self.arvrunner.num_retries) + except Exception as e: + logger.exception("While getting runner container: %s", e) + self.arvrunner.output_callback({}, "permanentFail") + del self.arvrunner.processes[record["uuid"]] + else: + super(RunnerContainer, self).done(container) + finally: + del self.arvrunner.processes[record["uuid"]]