X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/0f53d219c91812baeac4cff3387196c6501ec0c0..0eb72b526bf8bbb011551ecf019f604e17a534f1:/apps/workbench/app/controllers/container_requests_controller.rb

diff --git a/apps/workbench/app/controllers/container_requests_controller.rb b/apps/workbench/app/controllers/container_requests_controller.rb
index b67d100887..f61596ecc7 100644
--- a/apps/workbench/app/controllers/container_requests_controller.rb
+++ b/apps/workbench/app/controllers/container_requests_controller.rb
@@ -1,17 +1,81 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
 class ContainerRequestsController < ApplicationController
   skip_around_filter :require_thread_api_token, if: proc { |ctrl|
     Rails.configuration.anonymous_user_token and
     'show' == ctrl.action_name
   }
 
+  def generate_provenance(cr)
+    return if params['tab_pane'] != "Provenance"
+
+    nodes = {cr[:uuid] => cr}
+    child_crs = []
+    col_uuids = []
+    col_pdhs = []
+    col_uuids << cr[:output_uuid] if cr[:output_uuid]
+    col_pdhs += ProvenanceHelper::cr_input_pdhs(cr)
+
+    # Search for child CRs
+    if cr[:container_uuid]
+      child_crs = ContainerRequest.where(requesting_container_uuid: cr[:container_uuid])
+
+      child_crs.each do |child|
+        nodes[child[:uuid]] = child
+        col_uuids << child[:output_uuid] if child[:output_uuid]
+        col_pdhs += ProvenanceHelper::cr_input_pdhs(child)
+      end
+    end
+
+    output_cols = {} # Indexed by UUID
+    input_cols = {} # Indexed by PDH
+    output_pdhs = []
+
+    # Batch requests to get all related collections
+    # First fetch output collections by UUID.
+    Collection.filter([['uuid', 'in', col_uuids.uniq]]).each do |c|
+      output_cols[c[:uuid]] = c
+      output_pdhs << c[:portable_data_hash]
+    end
+    # Then, get only input collections by PDH. There could be more than one collection
+    # per PDH: the number of collections is used on the collection node label.
+    Collection.filter(
+      [['portable_data_hash', 'in', col_pdhs - output_pdhs]]).each do |c|
+      if input_cols[c[:portable_data_hash]]
+        input_cols[c[:portable_data_hash]] << c
+      else
+        input_cols[c[:portable_data_hash]] = [c]
+      end
+    end
+
+    @svg = ProvenanceHelper::create_provenance_graph(
+      nodes, "provenance_svg",
+      {
+        :request => request,
+        :direction => :top_down,
+        :output_collections => output_cols,
+        :input_collections => input_cols,
+        :cr_children_of => {
+          cr[:uuid] => child_crs.select{|child| child[:uuid]},
+        },
+      })
+  end
+
   def show_pane_list
-    panes = %w(Status Log Advanced)
+    panes = %w(Status Log Provenance Advanced)
     if @object.andand.state == 'Uncommitted'
-      panes = %w(Inputs) + panes - %w(Log)
+      panes = %w(Inputs) + panes - %w(Log Provenance)
     end
     panes
   end
 
+  def show
+    generate_provenance(@object)
+    super
+  end
+
   def cancel
     @object.update_attributes! priority: 0
     if params[:return_to]
@@ -59,4 +123,56 @@ class ContainerRequestsController < ApplicationController
     end
   end
 
+  def copy
+    src = @object
+
+    @object = ContainerRequest.new
+
+    # By default the copied CR won't be reusing containers, unless use_existing=true
+    # param is passed.
+    command = src.command
+    if params[:use_existing]
+      @object.use_existing = true
+      # Pass the correct argument to arvados-cwl-runner command.
+      if src.command[0] == 'arvados-cwl-runner'
+        command = src.command - ['--disable-reuse']
+        command.insert(1, '--enable-reuse')
+      end
+    else
+      @object.use_existing = false
+      # Pass the correct argument to arvados-cwl-runner command.
+      if src.command[0] == 'arvados-cwl-runner'
+        command = src.command - ['--enable-reuse']
+        command.insert(1, '--disable-reuse')
+      end
+    end
+
+    @object.command = command
+    @object.container_image = src.container_image
+    @object.cwd = src.cwd
+    @object.description = src.description
+    @object.environment = src.environment
+    @object.mounts = src.mounts
+    @object.name = src.name
+    @object.output_path = src.output_path
+    @object.priority = 1
+    @object.properties[:template_uuid] = src.properties[:template_uuid]
+    @object.runtime_constraints = src.runtime_constraints
+    @object.scheduling_parameters = src.scheduling_parameters
+    @object.state = 'Uncommitted'
+
+    # set owner_uuid to that of source, provided it is a project and writable by current user
+    current_project = Group.find(src.owner_uuid) rescue nil
+    if (current_project && current_project.writable_by.andand.include?(current_user.uuid))
+      @object.owner_uuid = src.owner_uuid
+    end
+
+    super
+  end
+
+  def index
+    @limit = 20
+    super
+  end
+
 end