X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/0e53f1c16b9417eecb693fe398585c81f7b4e329..39f5ca6f38aa5aa6b00479bcfb93e0a9a5cf511c:/sdk/python/arvados/stream.py diff --git a/sdk/python/arvados/stream.py b/sdk/python/arvados/stream.py index dc90d8e57c..7a29100a39 100644 --- a/sdk/python/arvados/stream.py +++ b/sdk/python/arvados/stream.py @@ -1,7 +1,6 @@ import gflags import httplib import httplib2 -import logging import os import pprint import sys @@ -71,7 +70,7 @@ def locators_and_ranges(data_locators, range_start, range_size, debug=False): block_size = data_locators[i][BLOCKSIZE] block_start = data_locators[i][OFFSET] block_end = block_start + block_size - + while i < len(data_locators): locator, block_size, block_start = data_locators[i] block_end = block_start + block_size @@ -137,7 +136,7 @@ class StreamFileReader(object): data = '' for locator, blocksize, segmentoffset, segmentsize in locators_and_ranges(self.segments, self._filepos, size): data += self._stream.readfrom(locator+segmentoffset, segmentsize) - self._filepos += len(data) + self._filepos += len(data) return data def readfrom(self, start, size): @@ -169,7 +168,7 @@ class StreamFileReader(object): dc = bz2.BZ2Decompressor() return self.decompress(lambda segment: dc.decompress(segment), size) elif re.search('\.gz$', self._name): - dc = zlib.decompressobj(16+zlib.MAX_WBITS) + dc = zlib.decompressobj(16+zlib.MAX_WBITS) return self.decompress(lambda segment: dc.decompress(dc.unconsumed_tail + segment), size) else: return self.readall(size) @@ -209,7 +208,7 @@ class StreamReader(object): self._keep = keep else: self._keep = Keep.global_client_object() - + streamoffset = 0L # parse stream @@ -264,11 +263,16 @@ class StreamReader(object): for locator, blocksize, segmentoffset, segmentsize in locators_and_ranges(self._data_locators, start, size): data += self._keep.get(locator)[segmentoffset:segmentoffset+segmentsize] return data - - def manifest_text(self): + + def manifest_text(self, strip=False): manifest_text = [self.name().replace(' ', '\\040')] - manifest_text.extend([d[LOCATOR] for d in self._data_locators]) - manifest_text.extend([' '.join(["{}:{}:{}".format(seg[LOCATOR], seg[BLOCKSIZE], f.name().replace(' ', '\\040')) + if strip: + for d in self._data_locators: + m = re.match(r'^[0-9a-f]{32}\+\d+', d[LOCATOR]) + manifest_text.append(m.group(0)) + else: + manifest_text.extend([d[LOCATOR] for d in self._data_locators]) + manifest_text.extend([' '.join(["{}:{}:{}".format(seg[LOCATOR], seg[BLOCKSIZE], f.name().replace(' ', '\\040')) for seg in f.segments]) for f in self._files.values()]) return ' '.join(manifest_text) + '\n'