X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/0a29de2f77bcce28b89561897d1b746a8c9151ac..4a9acc11eaba55a152851256d19c8fdad3b9f863:/lib/install/deps.go

diff --git a/lib/install/deps.go b/lib/install/deps.go
index 178d447c3f..a5c428d0a0 100644
--- a/lib/install/deps.go
+++ b/lib/install/deps.go
@@ -34,13 +34,13 @@ const goversion = "1.17.7"
 const (
 	rubyversion             = "2.7.5"
 	bundlerversion          = "2.2.19"
-	singularityversion      = "3.7.4"
+	singularityversion      = "3.9.9"
 	pjsversion              = "1.9.8"
 	geckoversion            = "0.24.0"
 	gradleversion           = "5.3.1"
 	nodejsversion           = "v12.22.11"
 	devtestDatabasePassword = "insecure_arvados_test"
-	workbench2version       = "5e020488f67b5bc919796e0dc8b0b9f3b3ff23b0"
+	workbench2version       = "2454ac35292a79594c32a80430740317ed5005cf"
 )
 
 //go:embed arvados.service
@@ -138,7 +138,6 @@ func (inst *installCommand) RunCommand(prog string, args []string, stdin io.Read
 		pkgs = append(pkgs,
 			"dpkg-dev",
 			"eatmydata", // install it for later steps, even if we're not using it now
-			"rsync",
 		)
 	}
 
@@ -185,6 +184,7 @@ func (inst *installCommand) RunCommand(prog string, args []string, stdin io.Read
 			"r-cran-markdown",
 			"r-cran-roxygen2",
 			"r-cran-xml",
+			"rsync",
 			"sudo",
 			"uuid-dev",
 			"wget",
@@ -199,10 +199,13 @@ func (inst *installCommand) RunCommand(prog string, args []string, stdin io.Read
 		}
 		if dev || test {
 			pkgs = append(pkgs, "squashfs-tools") // for singularity
+			pkgs = append(pkgs, "gnupg")          // for docker install recipe
 		}
 		switch {
-		case osv.Debian && osv.Major >= 10:
+		case osv.Debian && osv.Major >= 11:
 			pkgs = append(pkgs, "libcurl4", "perl-modules-5.32")
+		case osv.Debian && osv.Major >= 10:
+			pkgs = append(pkgs, "libcurl4", "perl-modules")
 		default:
 			pkgs = append(pkgs, "libcurl3", "perl-modules")
 		}
@@ -221,6 +224,37 @@ func (inst *installCommand) RunCommand(prog string, args []string, stdin io.Read
 		}
 	}
 
+	if dev || test {
+		if havedockerversion, err := exec.Command("docker", "--version").CombinedOutput(); err == nil {
+			logger.Printf("%s installed, assuming that version is ok", bytes.TrimSuffix(havedockerversion, []byte("\n")))
+		} else if osv.Debian {
+			var codename string
+			switch osv.Major {
+			case 10:
+				codename = "buster"
+			case 11:
+				codename = "bullseye"
+			default:
+				err = fmt.Errorf("don't know how to install docker-ce for debian %d", osv.Major)
+				return 1
+			}
+			err = inst.runBash(`
+rm -f /usr/share/keyrings/docker-archive-keyring.gpg
+curl -fsSL https://download.docker.com/linux/debian/gpg | gpg --dearmor -o /usr/share/keyrings/docker-archive-keyring.gpg
+echo 'deb [arch=amd64 signed-by=/usr/share/keyrings/docker-archive-keyring.gpg] https://download.docker.com/linux/debian/ `+codename+` stable' | \
+    tee /etc/apt/sources.list.d/docker.list
+apt-get update
+DEBIAN_FRONTEND=noninteractive apt-get --yes --no-install-recommends install docker-ce
+`, stdout, stderr)
+			if err != nil {
+				return 1
+			}
+		} else {
+			err = fmt.Errorf("don't know how to install docker for osversion %v", osv)
+			return 1
+		}
+	}
+
 	os.Mkdir("/var/lib/arvados", 0755)
 	os.Mkdir("/var/lib/arvados/tmp", 0700)
 	if prod || pkg {
@@ -336,6 +370,14 @@ make -C ./builddir install
 			}
 		}
 
+		err = inst.runBash(`
+install /usr/bin/nsenter /var/lib/arvados/bin/nsenter
+setcap "cap_sys_admin+pei cap_sys_chroot+pei" /var/lib/arvados/bin/nsenter
+`, stdout, stderr)
+		if err != nil {
+			return 1
+		}
+
 		// The entry in /etc/locale.gen is "en_US.UTF-8"; once
 		// it's installed, locale -a reports it as
 		// "en_US.utf8".
@@ -521,15 +563,6 @@ yarn install
 		for _, srcdir := range []string{
 			"cmd/arvados-client",
 			"cmd/arvados-server",
-			"services/arv-git-httpd",
-			"services/crunch-dispatch-local",
-			"services/crunch-dispatch-slurm",
-			"services/health",
-			"services/keep-balance",
-			"services/keep-web",
-			"services/keepproxy",
-			"services/keepstore",
-			"services/ws",
 		} {
 			fmt.Fprintf(stderr, "building %s...\n", srcdir)
 			cmd := exec.Command("go", "install", "-ldflags", "-X git.arvados.org/arvados.git/lib/cmd.version="+inst.PackageVersion+" -X main.version="+inst.PackageVersion+" -s -w")
@@ -544,19 +577,6 @@ yarn install
 			}
 		}
 
-		// Symlink user-facing Go programs /usr/bin/x ->
-		// /var/lib/arvados/bin/x
-		for _, prog := range []string{"arvados-client", "arvados-server"} {
-			err = os.Remove("/usr/bin/" + prog)
-			if err != nil && !errors.Is(err, os.ErrNotExist) {
-				return 1
-			}
-			err = os.Symlink("/var/lib/arvados/bin/"+prog, "/usr/bin/"+prog)
-			if err != nil {
-				return 1
-			}
-		}
-
 		// Copy assets from source tree to /var/lib/arvados/share
 		cmd := exec.Command("install", "-v", "-t", "/var/lib/arvados/share", filepath.Join(inst.SourcePath, "sdk/python/tests/nginx.conf"))
 		cmd.Stdout = stdout
@@ -566,6 +586,33 @@ yarn install
 			return 1
 		}
 
+		// Install python SDK and arv-mount in
+		// /var/lib/arvados/lib/python.
+		//
+		// setup.py writes a file in the source directory in
+		// order to include the version number in the package
+		// itself.  We don't want to write to the source tree
+		// (in "arvados-package" context it's mounted
+		// readonly) so we run setup.py in a temporary copy of
+		// the source dir.
+		if err = inst.runBash(`
+v=/var/lib/arvados/lib/python
+tmp=/var/lib/arvados/tmp/python
+python3 -m venv "$v"
+. "$v/bin/activate"
+pip3 install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
+export ARVADOS_BUILDING_VERSION="`+inst.PackageVersion+`"
+for src in "`+inst.SourcePath+`/sdk/python" "`+inst.SourcePath+`/services/fuse"; do
+  rsync -a --delete-after "$src/" "$tmp/"
+  cd "$tmp"
+  python3 setup.py install
+  cd ..
+  rm -rf "$tmp"
+done
+`, stdout, stderr); err != nil {
+			return 1
+		}
+
 		// Install Rails apps to /var/lib/arvados/{railsapi,workbench1}/
 		for dstdir, srcdir := range map[string]string{
 			"railsapi":   "services/api",
@@ -594,12 +641,15 @@ yarn install
 				{"touch", "log/production.log"},
 				{"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger", "log", "tmp", "vendor", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
 				{"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:" + bundlerversion},
-				{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--deployment", "--jobs", "8", "--path", "/var/www/.gem", "--without", "development test diagnostics performance"},
+				{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "deployment", "true"},
+				{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "path", "/var/www/.gem"},
+				{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "without", "development test diagnostics performance"},
+				{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--jobs", "8"},
 
 				{"chown", "www-data:www-data", ".", "public/assets"},
 				// {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "system", "true"},
-				{"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
-				{"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
+				{"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
+				{"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
 				{"chown", "root:root", "."},
 				{"chown", "-R", "root:root", "public/assets", "vendor"},
 
@@ -642,21 +692,71 @@ rsync -a --delete-after build/ /var/lib/arvados/workbench2/
 			return 1
 		}
 
+		// Install arvados-cli gem (binaries go in
+		// /var/lib/arvados/bin)
+		if err = inst.runBash(`
+/var/lib/arvados/bin/gem install --conservative --no-document arvados-cli
+`, stdout, stderr); err != nil {
+			return 1
+		}
+
 		err = os.WriteFile("/lib/systemd/system/arvados.service", arvadosServiceFile, 0777)
 		if err != nil {
 			return 1
 		}
-		// This is equivalent to "systemd enable", but does
-		// not depend on the systemctl program being
-		// available.
-		symlink := "/etc/systemd/system/multi-user.target.wants/arvados.service"
-		err = os.Remove(symlink)
-		if err != nil && !errors.Is(err, os.ErrNotExist) {
-			return 1
+		if prod {
+			// (fpm will do this for us in the pkg case)
+			// This is equivalent to "systemd enable", but
+			// does not depend on the systemctl program
+			// being available:
+			symlink := "/etc/systemd/system/multi-user.target.wants/arvados.service"
+			err = os.Remove(symlink)
+			if err != nil && !errors.Is(err, os.ErrNotExist) {
+				return 1
+			}
+			err = os.Symlink("/lib/systemd/system/arvados.service", symlink)
+			if err != nil {
+				return 1
+			}
 		}
-		err = os.Symlink("/lib/systemd/system/arvados.service", symlink)
-		if err != nil {
-			return 1
+
+		// Add symlinks in /usr/bin for user-facing programs
+		for _, srcdst := range [][]string{
+			// go
+			{"bin/arvados-client"},
+			{"bin/arvados-client", "arv"},
+			{"bin/arvados-server"},
+			// sdk/cli
+			{"bin/arv", "arv-ruby"},
+			{"bin/arv-tag"},
+			// sdk/python
+			{"lib/python/bin/arv-copy"},
+			{"lib/python/bin/arv-federation-migrate"},
+			{"lib/python/bin/arv-get"},
+			{"lib/python/bin/arv-keepdocker"},
+			{"lib/python/bin/arv-ls"},
+			{"lib/python/bin/arv-migrate-docker19"},
+			{"lib/python/bin/arv-normalize"},
+			{"lib/python/bin/arv-put"},
+			{"lib/python/bin/arv-ws"},
+			// services/fuse
+			{"lib/python/bin/arv-mount"},
+		} {
+			src := "/var/lib/arvados/" + srcdst[0]
+			if _, err = os.Stat(src); err != nil {
+				return 1
+			}
+			dst := srcdst[len(srcdst)-1]
+			_, dst = filepath.Split(dst)
+			dst = "/usr/bin/" + dst
+			err = os.Remove(dst)
+			if err != nil && !errors.Is(err, os.ErrNotExist) {
+				return 1
+			}
+			err = os.Symlink(src, dst)
+			if err != nil {
+				return 1
+			}
 		}
 	}