X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/060d38d627bd1e51dd2b3c6e7de9af6aa7d7b6f3..37516bc14fdfe634c78764c15f3a8eb3a09b403c:/sdk/cwl/tests/arvados-tests.sh

diff --git a/sdk/cwl/tests/arvados-tests.sh b/sdk/cwl/tests/arvados-tests.sh
index f069251a2a..0cf43405ec 100755
--- a/sdk/cwl/tests/arvados-tests.sh
+++ b/sdk/cwl/tests/arvados-tests.sh
@@ -1,9 +1,44 @@
-#!/bin/sh
+#!/bin/bash
 # Copyright (C) The Arvados Authors. All rights reserved.
 #
 # SPDX-License-Identifier: Apache-2.0
+#
+# This in an additional integration test suite for Arvados specific
+# bugs and features that are not covered by the unit tests or CWL
+# conformance tests.
+#
+
+set -ex
 
 if ! arv-get d7514270f356df848477718d58308cc4+94 > /dev/null ; then
-    arv-put --portable-data-hash testdir
+    arv-put --portable-data-hash testdir/*
+fi
+if ! arv-get f225e6259bdd63bc7240599648dde9f1+97 > /dev/null ; then
+    arv-put --portable-data-hash hg19/*
+fi
+if ! arv-get 4d8a70b1e63b2aad6984e40e338e2373+69 > /dev/null ; then
+    arv-put --portable-data-hash secondaryFiles/hello.txt*
+fi
+if ! arv-get 20850f01122e860fb878758ac1320877+71 > /dev/null ; then
+    arv-put --portable-data-hash samples/sample1_S01_R1_001.fastq.gz
 fi
-exec cwltest --test arvados-tests.yml --tool $PWD/runner.sh $@
+
+# Use the python executor associated with the installed OS package, if present.
+python="$(PATH="/usr/lib/python3-arvados-cwl-runner/bin:/opt/arvados-py/bin:$PATH" command -v python3)"
+
+# Test for #18888
+# This is a standalone test because the bug was observed with this
+# command line and was thought to be due to command line handling.
+arvados-cwl-runner 18888-download_def.cwl --scripts scripts/
+
+# Test for #19070
+# The most effective way to test this seemed to be to write an
+# integration test to check for the expected behavior.
+$python test_copy_deps.py
+
+# Test for #17004
+# Checks that the final output collection has the expected properties.
+$python test_set_output_prop.py
+
+# Run integration tests
+exec cwltest --test arvados-tests.yml --tool arvados-cwl-runner $@ -- --disable-reuse --compute-checksum --api=containers