X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/01a3a3cd88f56635a0f5d7938c70a3884c6b85bb..caf56e922b9caaa9a65332dc6bf3a36bd8fea48f:/sdk/cwl/arvados_cwl/arvdocker.py diff --git a/sdk/cwl/arvados_cwl/arvdocker.py b/sdk/cwl/arvados_cwl/arvdocker.py index 8f76bbf012..e59903f2dc 100644 --- a/sdk/cwl/arvados_cwl/arvdocker.py +++ b/sdk/cwl/arvados_cwl/arvdocker.py @@ -1,31 +1,81 @@ +# Copyright (C) The Arvados Authors. All rights reserved. +# +# SPDX-License-Identifier: Apache-2.0 + import logging +import sys +import threading +import copy + +from schema_salad.sourceline import SourceLine + import cwltool.docker +from cwltool.errors import WorkflowException import arvados.commands.keepdocker logger = logging.getLogger('arvados.cwl-runner') +cached_lookups = {} +cached_lookups_lock = threading.Lock() + def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid): """Check if a Docker image is available in Keep, if not, upload it using arv-keepdocker.""" if "dockerImageId" not in dockerRequirement and "dockerPull" in dockerRequirement: + dockerRequirement = copy.deepcopy(dockerRequirement) dockerRequirement["dockerImageId"] = dockerRequirement["dockerPull"] + if hasattr(dockerRequirement, 'lc'): + dockerRequirement.lc.data["dockerImageId"] = dockerRequirement.lc.data["dockerPull"] + + global cached_lookups + global cached_lookups_lock + with cached_lookups_lock: + if dockerRequirement["dockerImageId"] in cached_lookups: + return dockerRequirement["dockerImageId"] - sp = dockerRequirement["dockerImageId"].split(":") - image_name = sp[0] - image_tag = sp[1] if len(sp) > 1 else None + with SourceLine(dockerRequirement, "dockerImageId", WorkflowException, logger.isEnabledFor(logging.DEBUG)): + sp = dockerRequirement["dockerImageId"].split(":") + image_name = sp[0] + image_tag = sp[1] if len(sp) > 1 else "latest" - images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3, - image_name=image_name, - image_tag=image_tag) + images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3, + image_name=image_name, + image_tag=image_tag) - if not images: - imageId = cwltool.docker.get_image(dockerRequirement, pull_image) - args = ["--project-uuid="+project_uuid, image_name] - if image_tag: + if not images: + # Fetch Docker image if necessary. + try: + cwltool.docker.get_image(dockerRequirement, pull_image) + except OSError as e: + raise WorkflowException("While trying to get Docker image '%s', failed to execute 'docker': %s" % (dockerRequirement["dockerImageId"], e)) + + # Upload image to Arvados + args = [] + if project_uuid: + args.append("--project-uuid="+project_uuid) + args.append(image_name) args.append(image_tag) - logger.info("Uploading Docker image %s", ":".join(args[1:])) - arvados.commands.keepdocker.main(args, stdout=sys.stderr) + logger.info("Uploading Docker image %s:%s", image_name, image_tag) + try: + arvados.commands.keepdocker.main(args, stdout=sys.stderr) + except SystemExit as e: + if e.code: + raise WorkflowException("keepdocker exited with code %s" % e.code) + + images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3, + image_name=image_name, + image_tag=image_tag) - # XXX return PDH instead + if not images: + raise WorkflowException("Could not find Docker image %s:%s" % (image_name, image_tag)) + + with cached_lookups_lock: + cached_lookups[dockerRequirement["dockerImageId"]] = True return dockerRequirement["dockerImageId"] + +def arv_docker_clear_cache(): + global cached_lookups + global cached_lookups_lock + with cached_lookups_lock: + cached_lookups = {}