Merge branch 'master' into 2272-setup-user-in-workbench

[arvados.git] / doc / user / tutorials / tutorial-new-pipeline.html.textile.liquid

diff --git a/doc/user/tutorials/tutorial-new-pipeline.html.textile.liquid b/doc/user/tutorials/tutorial-new-pipeline.html.textile.liquid
index b0025c7176f1da1bc5684bb934396ead0cb08bae..a832434287aad6189796c7906e5e06bb20a32162 100644 (file)
--- a/doc/user/tutorials/tutorial-new-pipeline.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-new-pipeline.html.textile.liquid
@@ -43,7 +43,7 @@ Next, create a file that contains the pipeline definition:
           "dataclass": "Collection"
         }
       },
-      "repository":"<b>you</b>",
+      "repository":"$USER",
       "script_version":"master",
       "output_is_persistent":false
     },
@@ -54,7 +54,7 @@ Next, create a file that contains the pipeline definition:
           "output_of":"do_hash"
         }
       },
-      "repository":"<b>you</b>",
+      "repository":"$USER",
       "script_version":"master",
       "output_is_persistent":true
     }
@@ -64,7 +64,9 @@ EOF
 </span></code></pre>
 </notextile>
 
-* @"output_of"@ indicates that the @output@ of the @do_hash@ component is connected to the @"input"@ of @do_filter@.  This is a _dependency_.  Arvados uses the dependencies between jobs to automatically determine the correct order to run the jobs.
+* @"output_of"@ indicates that the @output@ of the @do_hash@ component should be used as the @"input"@ of @do_filter@.  Arvados uses these dependencies between jobs to automatically determine the correct order to run them.
+
+(Your shell should automatically fill in @$USER@ with your login name.  The JSON that gets saved should have @"repository"@ pointed at your personal git repository.)
 
 Now, use @arv pipeline_template create@ to register your pipeline template in Arvados: