twostep-both-remote-success:
type: Any
outputSource: twostep-both-remote/success
+ twostep-remote-copy-to-home-success:
+ type: Any
+ outputSource: twostep-remote-copy-to-home/success
+ scatter-gather-success:
+ type: Any
+ outputSource: scatter-gather/success
+ threestep-remote-success:
+ type: Any
+ outputSource: threestep-remote/success
+ hint-on-wf-success:
+ type: Any
+ outputSource: hint-on-wf/success
+ hint-on-tool-success:
+ type: Any
+ outputSource: hint-on-tool/success
steps:
base-case:
+ doc: |
+ Base case (no federation), single step workflow with both the
+ runner and step on the same cluster.
in:
arvados_api_token: arvados_api_token
arvado_api_host_insecure: arvado_api_host_insecure
run: framework/testcase.cwl
runner-home-step-remote:
+ doc: |
+ Single step workflow with the runner on the home cluster and the
+ step on the remote cluster. ClusterTarget hint is on the workflow step.
in:
arvados_api_token: arvados_api_token
arvado_api_host_insecure: arvado_api_host_insecure
run: framework/testcase.cwl
runner-remote-step-home:
+ doc: |
+ Single step workflow with the runner on the remote cluster and the
+ step on the home cluster.
in:
arvados_api_token: arvados_api_token
arvado_api_host_insecure: arvado_api_host_insecure
run: framework/testcase.cwl
remote-case:
+ doc: |
+ Single step workflow with both the runner and the step on the
+ remote cluster.
in:
arvados_api_token: arvados_api_token
arvado_api_host_insecure: arvado_api_host_insecure
scrub_image: {default: "arvados/fed-test:remote-case"}
scrub_collections:
default:
- - 031a4ced0aa99de90fb630568afc6e9b+67 # input collection
- - eb93a6718eb1a1a8ee9f66ee7d683472+51 # md5sum output collection
- - f654d4048612135f4a5e7707ec0fcf3e+112 # final output json
+ - fccd49fdef8e452295f718208abafd88+69 # input collection
+ - 58c0e8ea6b148134ef8577ee11307eec+51 # md5sum output collection
+ - 1fd679c5ab64c123b9764024dbf560f0+112 # final output json
out: [out, success]
run: framework/testcase.cwl
twostep-home-to-remote:
+ doc: |
+ Two step workflow. The runner is on the home cluster, the first
+ step is on the home cluster, the second step is on the remote
+ cluster.
in:
arvados_api_token: arvados_api_token
arvado_api_host_insecure: arvado_api_host_insecure
run: framework/testcase.cwl
twostep-remote-to-home:
+ doc: |
+ Two step workflow. The runner is on the home cluster, the first
+ step is on the remote cluster, the second step is on the home
+ cluster.
in:
arvados_api_token: arvados_api_token
arvado_api_host_insecure: arvado_api_host_insecure
run: framework/testcase.cwl
twostep-both-remote:
+ doc: |
+ Two step workflow. The runner is on the home cluster, both steps are
+ on the remote cluster.
in:
arvados_api_token: arvados_api_token
arvado_api_host_insecure: arvado_api_host_insecure
- ddfa58a81953dad08436d571615dd584+112 # runner output json
out: [out, success]
run: framework/testcase.cwl
+
+ twostep-remote-copy-to-home:
+ doc: |
+ Two step workflow. The runner is on the home cluster, the first
+ step is on the remote cluster, the second step is on the home
+ cluster, and propagates its input file directly from input to
+ output by symlinking the input file in the output directory.
+ Tests that crunch-run will copy blocks from remote to local
+ when preparing output collection.
+ in:
+ arvados_api_token: arvados_api_token
+ arvado_api_host_insecure: arvado_api_host_insecure
+ arvados_api_hosts: arvados_api_hosts
+ arvados_cluster_ids: arvados_cluster_ids
+ acr: acr
+ wf:
+ default:
+ class: File
+ location: cases/twostep-remote-copy-to-home.cwl
+ secondaryFiles:
+ - class: File
+ location: cases/md5sum.cwl
+ - class: File
+ location: cases/rev-input-to-output.cwl
+ obj:
+ default:
+ inp:
+ class: File
+ location: data/twostep-remote-copy-to-home.txt
+ valueFrom: |-
+ ${
+ self["md5sumCluster"] = inputs.arvados_cluster_ids[1];
+ self["revCluster"] = inputs.arvados_cluster_ids[0];
+ return self;
+ }
+ runner_cluster: { valueFrom: "$(inputs.arvados_cluster_ids[0])" }
+ scrub_image: {default: "arvados/fed-test:twostep-remote-copy-to-home"}
+ scrub_collections:
+ default:
+ - 538887bc29a3098bf79abdb8536d17bd+79 # input collection
+ - 14da0e0d52d7ab2945427074b275e9ee+51 # md5sum output collection
+ - 2d3a4a840077390a0d7788f169eaba89+112 # rev output collection
+ - 2d3a4a840077390a0d7788f169eaba89+112 # runner output json
+ out: [out, success]
+ run: framework/testcase.cwl
+
+ scatter-gather:
+ doc: ""
+ in:
+ arvados_api_token: arvados_api_token
+ arvado_api_host_insecure: arvado_api_host_insecure
+ arvados_api_hosts: arvados_api_hosts
+ arvados_cluster_ids: arvados_cluster_ids
+ acr: acr
+ wf:
+ default:
+ class: File
+ location: cases/scatter-gather.cwl
+ secondaryFiles:
+ - class: File
+ location: cases/md5sum.cwl
+ - class: File
+ location: cases/cat.cwl
+ obj:
+ default:
+ shards:
+ - class: File
+ location: data/scatter-gather-s1.txt
+ - class: File
+ location: data/scatter-gather-s2.txt
+ - class: File
+ location: data/scatter-gather-s3.txt
+ valueFrom: |-
+ ${
+ self["clusters"] = inputs.arvados_cluster_ids;
+ return self;
+ }
+ runner_cluster: { valueFrom: "$(inputs.arvados_cluster_ids[0])" }
+ scrub_image: {default: "arvados/fed-test:scatter-gather"}
+ scrub_collections:
+ default:
+ - 99cc18329bce1b4a5fe6c4cf60477668+209 # input collection
+ - 2e570e844e03c7027baad148642d726f+51 # s1 md5sum output collection
+ - 61c88ee7811d0b849b5c06376eb065a6+51 # s2 md5sum output collection
+ - 85aaf18d638045fe609e025d3a319b2a+51 # s3 md5sum output collection
+ - ec44bcba77e65128f1a8f843d881ede4+56 # cat output collection
+ - 89de265942800ae36549109969940363+117 # runner output json
+ out: [out, success]
+ run: framework/testcase.cwl
+
+ threestep-remote:
+ doc: ""
+ in:
+ arvados_api_token: arvados_api_token
+ arvado_api_host_insecure: arvado_api_host_insecure
+ arvados_api_hosts: arvados_api_hosts
+ arvados_cluster_ids: arvados_cluster_ids
+ acr: acr
+ wf:
+ default:
+ class: File
+ location: cases/threestep-remote.cwl
+ secondaryFiles:
+ - class: File
+ location: cases/md5sum.cwl
+ - class: File
+ location: cases/rev-input-to-output.cwl
+ obj:
+ default:
+ inp:
+ class: File
+ location: data/threestep-remote.txt
+ valueFrom: |-
+ ${
+ self["clusterA"] = inputs.arvados_cluster_ids[0];
+ self["clusterB"] = inputs.arvados_cluster_ids[1];
+ self["clusterC"] = inputs.arvados_cluster_ids[2];
+ return self;
+ }
+ runner_cluster: { valueFrom: "$(inputs.arvados_cluster_ids[0])" }
+ scrub_image: {default: "arvados/fed-test:threestep-remote"}
+ scrub_collections:
+ default:
+ - 9fbf33e62876357fe134f619865cc5a5+68 # input collection
+ - 210c5f2a716f6689b04316acd4928c10+51 # md5sum output collection
+ - 3abea7506269d5ebf61fb17c78bbd2af+105 # revB output
+ - 9e1b3acb28949759ad07e4c9740bbaa5+113 # revC output
+ - 8c86dbec7de7948871b5e168ede417e1+120 # runner output json
+ out: [out, success]
+ run: framework/testcase.cwl
+
+ hint-on-wf:
+ doc: |
+ Single step workflow with the runner on the home cluster and the
+ step on the remote cluster. ClusterTarget hint is at the workflow level.
+ in:
+ arvados_api_token: arvados_api_token
+ arvado_api_host_insecure: arvado_api_host_insecure
+ arvados_api_hosts: arvados_api_hosts
+ arvados_cluster_ids: arvados_cluster_ids
+ acr: acr
+ wf:
+ default:
+ class: File
+ location: cases/hint-on-wf.cwl
+ secondaryFiles:
+ - class: File
+ location: cases/md5sum.cwl
+ obj:
+ default:
+ inp:
+ class: File
+ location: data/hint-on-wf.txt
+ valueFrom: |-
+ ${
+ self["runOnCluster"] = inputs.arvados_cluster_ids[1];
+ return self;
+ }
+ runner_cluster: { valueFrom: "$(inputs.arvados_cluster_ids[0])" }
+ scrub_image: {default: "arvados/fed-test:hint-on-wf"}
+ scrub_collections:
+ default:
+ - 862433f328041b2525c90b1dc3c462fd+62 # input collection
+ - 9a68b0b9720977faba8a28e75a4398b7+51 # md5sum output collection
+ - 6a601cddb36ee2f766783b1aa9ff8d66+112 # runner output json
+ out: [out, success]
+ run: framework/testcase.cwl
+
+ hint-on-tool:
+ doc: |
+ Single step workflow with the runner on the home cluster and the
+ step on the remote cluster. ClusterTarget hint is at the tool level.
+ in:
+ arvados_api_token: arvados_api_token
+ arvado_api_host_insecure: arvado_api_host_insecure
+ arvados_api_hosts: arvados_api_hosts
+ arvados_cluster_ids: arvados_cluster_ids
+ acr: acr
+ wf:
+ default:
+ class: File
+ location: cases/hint-on-tool.cwl
+ secondaryFiles:
+ - class: File
+ location: cases/md5sum-tool-hint.cwl
+ obj:
+ default:
+ inp:
+ class: File
+ location: data/hint-on-tool.txt
+ valueFrom: |-
+ ${
+ self["runOnCluster"] = inputs.arvados_cluster_ids[1];
+ return self;
+ }
+ runner_cluster: { valueFrom: "$(inputs.arvados_cluster_ids[0])" }
+ scrub_image: {default: "arvados/fed-test:hint-on-tool"}
+ scrub_collections:
+ default:
+ - 6803004a4f8db9f8d1d54f6229851599+64 # input collection
+ - cacb0d56235564b5ff485c5b31215ab5+51 # md5sum output collection
+ - 2b50af43fdd84a9e906be2d54b92cddf+112 # runner output json
+ out: [out, success]
+ run: framework/testcase.cwl
projects / arvados.git / blobdiff