for k,v in job_order_object.items():
if isinstance(v, basestring) and arvados.util.keep_locator_pattern.match(v):
job_order_object[k] = {
"class": "File",
for k,v in job_order_object.items():
if isinstance(v, basestring) and arvados.util.keep_locator_pattern.match(v):
job_order_object[k] = {
"class": "File",
- adjustFiles(job_order_object, keeppath)
+ adjustFileObjs(job_order_object, keeppathObj)
+ adjustDirObjs(job_order_object, keeppathObj)
for f in c:
final.copy(f, f, c, True)
for f in c:
final.copy(f, f, c, True)
with final.open("cwl.output.json", "w") as f:
json.dump(outputObj, f, indent=4)
with final.open("cwl.output.json", "w") as f:
json.dump(outputObj, f, indent=4)