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fixed syntax error
[arvados.git]
/
crunch_scripts
/
arvados-bcbio-nextgen.py
diff --git
a/crunch_scripts/arvados-bcbio-nextgen.py
b/crunch_scripts/arvados-bcbio-nextgen.py
index 13b1ef9e87bb40afc43ba7b65771c95c38679c65..30a1e2f533d062676bba6dcfea253d24d9d5f35a 100755
(executable)
--- a/
crunch_scripts/arvados-bcbio-nextgen.py
+++ b/
crunch_scripts/arvados-bcbio-nextgen.py
@@
-77,4
+77,4
@@
rcode = subprocess.call(["bcbio_nextgen.py", "--workflow", "template", "gatk-var
os.chdir("project1/work")
-rcode = subprocess.call(["bcbio_nextgen.py", "../config/project1.yaml"
)
])
+rcode = subprocess.call(["bcbio_nextgen.py", "../config/project1.yaml"])