from cwltool.load_tool import fetch_document, resolve_and_validate_document
from cwltool.process import shortname
from cwltool.workflow import Workflow, WorkflowException, WorkflowStep
-from cwltool.utils import adjustFileObjs, adjustDirObjs, visit_class
+from cwltool.utils import adjustFileObjs, adjustDirObjs, visit_class, normalizeFilesDirs
from cwltool.context import LoadingContext
import ruamel.yaml as yaml
discover_secondary_files(self.arvrunner.fs_access, builder,
self.tool["inputs"], joborder)
+ normalizeFilesDirs(joborder)
with Perf(metrics, "subworkflow upload_deps"):
upload_dependencies(self.arvrunner,