"os/exec"
"os/user"
"path/filepath"
+ "regexp"
"runtime"
"strconv"
"strings"
const goversion = "1.20.6"
const (
- rubyversion = "2.7.7"
- bundlerversion = "2.2.19"
- singularityversion = "3.10.4"
- pjsversion = "1.9.8"
- geckoversion = "0.24.0"
- gradleversion = "5.3.1"
- nodejsversion = "v12.22.12"
- devtestDatabasePassword = "insecure_arvados_test"
+ defaultRubyVersion = "3.2.2"
+ defaultBundlerVersion = "2.2.19"
+ defaultSingularityVersion = "3.10.4"
+ pjsversion = "1.9.8"
+ geckoversion = "0.24.0"
+ gradleversion = "5.3.1"
+ defaultNodejsVersion = "12.22.12"
+ devtestDatabasePassword = "insecure_arvados_test"
)
//go:embed arvados.service
var arvadosServiceFile []byte
type installCommand struct {
- ClusterType string
- SourcePath string
- Commit string
- PackageVersion string
- EatMyData bool
+ ClusterType string
+ SourcePath string
+ Commit string
+ PackageVersion string
+ RubyVersion string
+ BundlerVersion string
+ SingularityVersion string
+ NodejsVersion string
+ EatMyData bool
}
func (inst *installCommand) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
flags.StringVar(&inst.SourcePath, "source", "/arvados", "source tree location (required for -type=package)")
flags.StringVar(&inst.Commit, "commit", "", "source commit `hash` to embed (blank means use 'git log' or all-zero placeholder)")
flags.StringVar(&inst.PackageVersion, "package-version", "0.0.0", "version string to embed in executable files")
+ flags.StringVar(&inst.RubyVersion, "ruby-version", defaultRubyVersion, "Ruby `version` to install (do not override in production mode)")
+ flags.StringVar(&inst.BundlerVersion, "bundler-version", defaultBundlerVersion, "Bundler `version` to install (do not override in production mode)")
+ flags.StringVar(&inst.SingularityVersion, "singularity-version", defaultSingularityVersion, "Singularity `version` to install (do not override in production mode)")
+ flags.StringVar(&inst.NodejsVersion, "nodejs-version", defaultNodejsVersion, "Nodejs `version` to install (not applicable in production mode)")
flags.BoolVar(&inst.EatMyData, "eatmydata", false, "use eatmydata to speed up install")
if ok, code := cmd.ParseFlags(flags, prog, args, "", stderr); !ok {
return 1
}
+ if ok, _ := regexp.MatchString(`^\d\.\d+\.\d+$`, inst.RubyVersion); !ok {
+ fmt.Fprintf(stderr, "invalid argument %q for -ruby-version\n", inst.RubyVersion)
+ return 2
+ }
+ if ok, _ := regexp.MatchString(`^\d`, inst.BundlerVersion); !ok {
+ fmt.Fprintf(stderr, "invalid argument %q for -bundler-version\n", inst.BundlerVersion)
+ return 2
+ }
+ if ok, _ := regexp.MatchString(`^\d`, inst.SingularityVersion); !ok {
+ fmt.Fprintf(stderr, "invalid argument %q for -singularity-version\n", inst.SingularityVersion)
+ return 2
+ }
+ if ok, _ := regexp.MatchString(`^\d`, inst.NodejsVersion); !ok {
+ fmt.Fprintf(stderr, "invalid argument %q for -nodejs-version\n", inst.NodejsVersion)
+ return 2
+ }
+
osv, err := identifyOS()
if err != nil {
return 1
"default-jre-headless",
"gettext",
"libattr1-dev",
+ "libffi-dev",
"libfuse-dev",
"libgbm1", // cypress / workbench2 tests
"libgnutls28-dev",
"libssl-dev",
"libxml2-dev",
"libxslt1-dev",
+ "libyaml-dev",
"linkchecker",
"lsof",
"make",
"gnupg") // docker install recipe
}
switch {
- case osv.Debian && osv.Major >= 11:
- pkgs = append(pkgs, "g++", "libcurl4", "libcurl4-openssl-dev")
- case osv.Debian && osv.Major >= 10:
+ case osv.Debian && osv.Major >= 10,
+ osv.Ubuntu && osv.Major >= 22:
pkgs = append(pkgs, "g++", "libcurl4", "libcurl4-openssl-dev")
case osv.Debian || osv.Ubuntu:
pkgs = append(pkgs, "g++", "libcurl3", "libcurl3-openssl-dev")
return 1
}
}
- rubymajorversion := rubyversion[:strings.LastIndex(rubyversion, ".")]
- if haverubyversion, err := exec.Command("/var/lib/arvados/bin/ruby", "-v").CombinedOutput(); err == nil && bytes.HasPrefix(haverubyversion, []byte("ruby "+rubyversion)) {
- logger.Print("ruby " + rubyversion + " already installed")
+ rubyminorversion := inst.RubyVersion[:strings.LastIndex(inst.RubyVersion, ".")]
+ if haverubyversion, err := exec.Command("/var/lib/arvados/bin/ruby", "-v").CombinedOutput(); err == nil && bytes.HasPrefix(haverubyversion, []byte("ruby "+inst.RubyVersion)) {
+ logger.Print("ruby " + inst.RubyVersion + " already installed")
} else {
err = inst.runBash(`
+rubyversion="`+inst.RubyVersion+`"
+rubyminorversion="`+rubyminorversion+`"
tmp="$(mktemp -d)"
trap 'rm -r "${tmp}"' ERR EXIT
-wget --progress=dot:giga -O- https://cache.ruby-lang.org/pub/ruby/`+rubymajorversion+`/ruby-`+rubyversion+`.tar.gz | tar -C "${tmp}" -xzf -
-cd "${tmp}/ruby-`+rubyversion+`"
+wget --progress=dot:giga -O- "https://cache.ruby-lang.org/pub/ruby/$rubyminorversion/ruby-$rubyversion.tar.gz" | tar -C "${tmp}" -xzf -
+cd "${tmp}/ruby-$rubyversion"
./configure --disable-install-static-library --enable-shared --disable-install-doc --prefix /var/lib/arvados
make -j8
+rm -f /var/lib/arvados/bin/erb
make install
+if [[ "$rubyversion" > "3" ]]; then
+ /var/lib/arvados/bin/gem update --no-document --system 3.4.21
+fi
/var/lib/arvados/bin/gem install bundler --no-document
`, stdout, stderr)
if err != nil {
}
}
- if havesingularityversion, err := exec.Command("/var/lib/arvados/bin/singularity", "--version").CombinedOutput(); err == nil && strings.Contains(string(havesingularityversion), singularityversion) {
- logger.Print("singularity " + singularityversion + " already installed")
+ if havesingularityversion, err := exec.Command("/var/lib/arvados/bin/singularity", "--version").CombinedOutput(); err == nil && strings.Contains(string(havesingularityversion), inst.SingularityVersion) {
+ logger.Print("singularity " + inst.SingularityVersion + " already installed")
} else if dev || test {
err = inst.runBash(`
-S=`+singularityversion+`
+S=`+inst.SingularityVersion+`
tmp=/var/lib/arvados/tmp/singularity
trap "rm -r ${tmp}" ERR EXIT
cd /var/lib/arvados/tmp
}
if !prod {
- if havenodejsversion, err := exec.Command("/usr/local/bin/node", "--version").CombinedOutput(); err == nil && string(havenodejsversion) == nodejsversion+"\n" {
- logger.Print("nodejs " + nodejsversion + " already installed")
+ if havenodejsversion, err := exec.Command("/usr/local/bin/node", "--version").CombinedOutput(); err == nil && string(havenodejsversion) == "v"+inst.NodejsVersion+"\n" {
+ logger.Print("nodejs " + inst.NodejsVersion + " already installed")
} else {
err = inst.runBash(`
-NJS=`+nodejsversion+`
+NJS=v`+inst.NodejsVersion+`
rm -rf /var/lib/arvados/node-*-linux-x64
wget --progress=dot:giga -O- https://nodejs.org/dist/${NJS}/node-${NJS}-linux-x64.tar.xz | sudo tar -C /var/lib/arvados -xJf -
ln -sfv /var/lib/arvados/node-${NJS}-linux-x64/bin/{node,npm} /usr/local/bin/
} else {
err = inst.runBash(`
npm install -g yarn
-ln -sfv /var/lib/arvados/node-`+nodejsversion+`-linux-x64/bin/{yarn,yarnpkg} /usr/local/bin/
+ln -sfv /var/lib/arvados/node-v`+inst.NodejsVersion+`-linux-x64/bin/{yarn,yarnpkg} /usr/local/bin/
`, stdout, stderr)
if err != nil {
return 1
export ARVADOS_BUILDING_VERSION="`+inst.PackageVersion+`"
for src in "`+inst.SourcePath+`/sdk/python" "`+inst.SourcePath+`/services/fuse"; do
rsync -a --delete-after "$src/" "$tmp/"
- cd "$tmp"
- python3 setup.py install
- cd ..
+ env -C "$tmp" python3 setup.py build
+ pip3 install "$tmp"
rm -rf "$tmp"
done
`, stdout, stderr); err != nil {
return 1
}
- // Install Rails apps to /var/lib/arvados/{railsapi,workbench1}/
- for dstdir, srcdir := range map[string]string{
- "railsapi": "services/api",
- "workbench1": "apps/workbench",
+ // Install RailsAPI to /var/lib/arvados/railsapi/
+ fmt.Fprintln(stderr, "building railsapi...")
+ cmd = exec.Command("rsync",
+ "-a", "--no-owner", "--no-group", "--delete-after", "--delete-excluded",
+ "--exclude", "/coverage",
+ "--exclude", "/log",
+ "--exclude", "/node_modules",
+ "--exclude", "/tmp",
+ "--exclude", "/public/assets",
+ "--exclude", "/vendor",
+ "--exclude", "/config/environments",
+ "./", "/var/lib/arvados/railsapi/")
+ cmd.Dir = filepath.Join(inst.SourcePath, "services", "api")
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ for _, cmdline := range [][]string{
+ {"mkdir", "-p", "log", "public/assets", "tmp", "vendor", ".bundle", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger"},
+ {"touch", "log/production.log"},
+ {"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger", "log", "tmp", "vendor", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:" + inst.BundlerVersion},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "deployment", "true"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "path", "/var/www/.gem"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "without", "development test diagnostics performance"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--jobs", fmt.Sprintf("%d", runtime.NumCPU())},
+
+ {"chown", "www-data:www-data", ".", "public/assets"},
+ // {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "system", "true"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
+ {"chown", "root:root", "."},
+ {"chown", "-R", "root:root", "public/assets", "vendor"},
+
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "build-native-support"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "install-standalone-runtime"},
} {
- fmt.Fprintf(stderr, "building %s...\n", srcdir)
- cmd := exec.Command("rsync",
- "-a", "--no-owner", "--no-group", "--delete-after", "--delete-excluded",
- "--exclude", "/coverage",
- "--exclude", "/log",
- "--exclude", "/node_modules",
- "--exclude", "/tmp",
- "--exclude", "/public/assets",
- "--exclude", "/vendor",
- "--exclude", "/config/environments",
- "./", "/var/lib/arvados/"+dstdir+"/")
- cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
- cmd.Stdout = stdout
- cmd.Stderr = stderr
- err = cmd.Run()
- if err != nil {
- return 1
- }
- for _, cmdline := range [][]string{
- {"mkdir", "-p", "log", "public/assets", "tmp", "vendor", ".bundle", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger"},
- {"touch", "log/production.log"},
- {"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger", "log", "tmp", "vendor", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:" + bundlerversion},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "deployment", "true"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "path", "/var/www/.gem"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "without", "development test diagnostics performance"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--jobs", fmt.Sprintf("%d", runtime.NumCPU())},
-
- {"chown", "www-data:www-data", ".", "public/assets"},
- // {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "system", "true"},
- {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
- {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
- {"chown", "root:root", "."},
- {"chown", "-R", "root:root", "public/assets", "vendor"},
-
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "build-native-support"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "install-standalone-runtime"},
- } {
- if cmdline[len(cmdline)-2] == "rake" && dstdir != "workbench1" {
- continue
- }
- cmd = exec.Command(cmdline[0], cmdline[1:]...)
- cmd.Dir = "/var/lib/arvados/" + dstdir
- cmd.Stdout = stdout
- cmd.Stderr = stderr
- fmt.Fprintf(stderr, "... %s\n", cmd.Args)
- err = cmd.Run()
- if err != nil {
- return 1
- }
+ if cmdline[len(cmdline)-2] == "rake" {
+ continue
}
- cmd = exec.Command("sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "validate-install")
- cmd.Dir = "/var/lib/arvados/" + dstdir
+ cmd = exec.Command(cmdline[0], cmdline[1:]...)
+ cmd.Dir = "/var/lib/arvados/railsapi"
cmd.Stdout = stdout
cmd.Stderr = stderr
+ fmt.Fprintf(stderr, "... %s\n", cmd.Args)
err = cmd.Run()
- if err != nil && !strings.Contains(err.Error(), "exit status 2") {
- // Exit code 2 indicates there were warnings (like
- // "other passenger installations have been detected",
- // which we can't expect to avoid) but no errors.
- // Other non-zero exit codes (1, 9) indicate errors.
+ if err != nil {
return 1
}
}
+ cmd = exec.Command("sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "validate-install")
+ cmd.Dir = "/var/lib/arvados/railsapi"
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil && !strings.Contains(err.Error(), "exit status 2") {
+ // Exit code 2 indicates there were warnings (like
+ // "other passenger installations have been detected",
+ // which we can't expect to avoid) but no errors.
+ // Other non-zero exit codes (1, 9) indicate errors.
+ return 1
+ }
- // Install workbench2 app to /var/lib/arvados/workbench2/
+ // Install workbench2 app to
+ // /var/lib/arvados/workbench2/.
+ //
+ // We copy the source tree from the (possibly
+ // readonly) source tree into a temp dir because `yarn
+ // build` writes to {source-tree}/build/. When we
+ // upgrade to react-scripts >= 4.0.2 we may be able to
+ // build from the source dir and write directly to the
+ // final destination (using
+ // YARN_INSTALL_STATE_PATH=/dev/null
+ // BUILD_PATH=/var/lib/arvados/workbench2) instead of
+ // using two rsync steps here.
if err = inst.runBash(`
src="`+inst.SourcePath+`/services/workbench2"
tmp=/var/lib/arvados/tmp/workbench2
+trap "rm -r ${tmp}" ERR EXIT
dst=/var/lib/arvados/workbench2
rsync -a --delete-after "$src/" "$tmp/"
env -C "$tmp" VERSION="`+inst.PackageVersion+`" BUILD_NUMBER=1 GIT_COMMIT="`+inst.Commit[:9]+`" yarn build
projects / arvados.git / blobdiff