arvbox start $config $tag
+# Copy the integration test suite from our local arvados clone instead
+# of using the one inside the container, so we can make changes to the
+# integration tests without necessarily having to rebuilding the
+# container image.
+docker cp -L $(readlink -f $(dirname $0)/tests) $ARVBOX_CONTAINER:/usr/src/arvados/sdk/cwl
+
arvbox pipe <<EOF
set -eu -o pipefail
git clone https://github.com/common-workflow-language/cwl-\${version}.git
fi
cd cwl-\${version}
+ git checkout \${version}.0
elif [[ "$suite" != "integration" ]] ; then
echo "ERROR: unknown suite '$suite'"
exit 1
fi
-if [[ "$suite" != "integration" ]] ; then
- git pull
-fi
+#if [[ "$suite" != "integration" ]] ; then
+# git pull
+#fi
export ARVADOS_API_HOST=localhost:8000
export ARVADOS_API_HOST_INSECURE=1
-export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados/superuser_token)
+export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados-arvbox/superuser_token)
if test -n "$build" ; then
/usr/src/arvados/build/build-dev-docker-jobs-image.sh
-elif test "$tag" = "latest" ; then
- arv-keepdocker --pull arvados/jobs $tag
-else
- set +u
- export WORKSPACE=/usr/src/arvados
- . /usr/src/arvados/build/run-library.sh
- TMPHERE=\$(pwd)
- cd /usr/src/arvados
- calculate_python_sdk_cwl_package_versions
- cd \$TMPHERE
- set -u
-
- arv-keepdocker --pull arvados/jobs \$cwl_runner_version
- docker tag arvados/jobs:\$cwl_runner_version arvados/jobs:latest
- arv-keepdocker arvados/jobs latest
fi
-cat >/tmp/cwltest/arv-cwl-jobs <<EOF2
-#!/bin/sh
-exec arvados-cwl-runner --api=jobs \\\$@
-EOF2
-chmod +x /tmp/cwltest/arv-cwl-jobs
-
-cat >/tmp/cwltest/arv-cwl-containers <<EOF2
-#!/bin/sh
-exec arvados-cwl-runner --api=containers \\\$@
-EOF2
-chmod +x /tmp/cwltest/arv-cwl-containers
-
EXTRA=--compute-checksum
if [[ $devcwl -eq 1 ]] ; then
fi
env
+
+# Skip docker_entrypoint test because it fails on singularity
+#
+# Skip timelimit_invalid_wf test because the timeout is very short
+# (5s) and singularity containers loading off an arv-mount take too long
+# to start and get incorrectly terminated
+#
+# Skip test 199 in the v1.1 suite because it has different output
+# depending on whether there is a pty associated with stdout (fixed in
+# the v1.2 suite)
+#
+# Skip test 307 in the v1.2 suite because the test relied on
+# secondary file behavior of cwltool that wasn't actually correct to specification
+
if [[ "$suite" = "integration" ]] ; then
cd /usr/src/arvados/sdk/cwl/tests
exec ./arvados-tests.sh $@
-else
- exec ./run_test.sh RUNNER=/tmp/cwltest/arv-cwl-${runapi} EXTRA="\$EXTRA" $@
+elif [[ "$suite" = "conformance-v1.2" ]] ; then
+ exec cwltest --tool arvados-cwl-runner --test conformance_tests.yaml -Sdocker_entrypoint,timelimit_invalid_wf -N307 $@ -- \$EXTRA
+elif [[ "$suite" = "conformance-v1.1" ]] ; then
+ exec cwltest --tool arvados-cwl-runner --test conformance_tests.yaml -Sdocker_entrypoint,timelimit_invalid_wf -N199 $@ -- \$EXTRA
+elif [[ "$suite" = "conformance-v1.0" ]] ; then
+ exec cwltest --tool arvados-cwl-runner --test v1.0/conformance_test_v1.0.yaml -Sdocker_entrypoint $@ -- \$EXTRA
fi
EOF