#' @name users.get
NULL
-#' users.index is a method defined in Arvados class.
-#'
-#' @usage arv$users.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return UserList object.
-#' @name users.index
-NULL
-
#' users.create is a method defined in Arvados class.
#'
#' @usage arv$users.create(user, ensure_unique_name = "false")
#' @name users.list
NULL
-#' users.show is a method defined in Arvados class.
-#'
-#' @usage arv$users.show(uuid)
-#' @param uuid
-#' @return User object.
-#' @name users.show
-NULL
-
-#' users.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$users.destroy(uuid)
-#' @param uuid
-#' @return User object.
-#' @name users.destroy
-NULL
-
#' api_client_authorizations.get is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.get(uuid)
#' @name api_client_authorizations.get
NULL
-#' api_client_authorizations.index is a method defined in Arvados class.
-#'
-#' @usage arv$api_client_authorizations.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return ApiClientAuthorizationList object.
-#' @name api_client_authorizations.index
-NULL
-
#' api_client_authorizations.create is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.create(apiclientauthorization,
#' @name api_client_authorizations.list
NULL
-#' api_client_authorizations.show is a method defined in Arvados class.
+#' containers.get is a method defined in Arvados class.
+#'
+#' @usage arv$containers.get(uuid)
+#' @param uuid The UUID of the Container in question.
+#' @return Container object.
+#' @name containers.get
+NULL
+
+#' containers.create is a method defined in Arvados class.
+#'
+#' @usage arv$containers.create(container,
+#' ensure_unique_name = "false")
+#' @param container Container object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Container object.
+#' @name containers.create
+NULL
+
+#' containers.update is a method defined in Arvados class.
+#'
+#' @usage arv$containers.update(container,
+#' uuid)
+#' @param container Container object.
+#' @param uuid The UUID of the Container in question.
+#' @return Container object.
+#' @name containers.update
+NULL
+
+#' containers.delete is a method defined in Arvados class.
+#'
+#' @usage arv$containers.delete(uuid)
+#' @param uuid The UUID of the Container in question.
+#' @return Container object.
+#' @name containers.delete
+NULL
+
+#' containers.auth is a method defined in Arvados class.
#'
-#' @usage arv$api_client_authorizations.show(uuid)
+#' @usage arv$containers.auth(uuid)
#' @param uuid
-#' @return ApiClientAuthorization object.
-#' @name api_client_authorizations.show
+#' @return Container object.
+#' @name containers.auth
NULL
-#' api_client_authorizations.destroy is a method defined in Arvados class.
+#' containers.lock is a method defined in Arvados class.
#'
-#' @usage arv$api_client_authorizations.destroy(uuid)
+#' @usage arv$containers.lock(uuid)
#' @param uuid
-#' @return ApiClientAuthorization object.
-#' @name api_client_authorizations.destroy
+#' @return Container object.
+#' @name containers.lock
NULL
-#' api_clients.get is a method defined in Arvados class.
+#' containers.unlock is a method defined in Arvados class.
#'
-#' @usage arv$api_clients.get(uuid)
-#' @param uuid The UUID of the ApiClient in question.
-#' @return ApiClient object.
-#' @name api_clients.get
+#' @usage arv$containers.unlock(uuid)
+#' @param uuid
+#' @return Container object.
+#' @name containers.unlock
NULL
-#' api_clients.index is a method defined in Arvados class.
+#' containers.secret_mounts is a method defined in Arvados class.
#'
-#' @usage arv$api_clients.index(filters = NULL,
+#' @usage arv$containers.secret_mounts(uuid)
+#' @param uuid
+#' @return Container object.
+#' @name containers.secret_mounts
+NULL
+
+#' containers.current is a method defined in Arvados class.
+#'
+#' @usage arv$containers.current(NULL)
+#' @return Container object.
+#' @name containers.current
+NULL
+
+#' containers.list is a method defined in Arvados class.
+#'
+#' @usage arv$containers.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return ApiClientList object.
-#' @name api_clients.index
+#' @return ContainerList object.
+#' @name containers.list
+NULL
+
+#' api_clients.get is a method defined in Arvados class.
+#'
+#' @usage arv$api_clients.get(uuid)
+#' @param uuid The UUID of the ApiClient in question.
+#' @return ApiClient object.
+#' @name api_clients.get
NULL
#' api_clients.create is a method defined in Arvados class.
#' @name api_clients.list
NULL
-#' api_clients.show is a method defined in Arvados class.
+#' authorized_keys.get is a method defined in Arvados class.
#'
-#' @usage arv$api_clients.show(uuid)
-#' @param uuid
-#' @return ApiClient object.
-#' @name api_clients.show
+#' @usage arv$authorized_keys.get(uuid)
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.get
NULL
-#' api_clients.destroy is a method defined in Arvados class.
+#' authorized_keys.create is a method defined in Arvados class.
#'
-#' @usage arv$api_clients.destroy(uuid)
-#' @param uuid
-#' @return ApiClient object.
-#' @name api_clients.destroy
+#' @usage arv$authorized_keys.create(authorizedkey,
+#' ensure_unique_name = "false")
+#' @param authorizedKey AuthorizedKey object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.create
NULL
-#' container_requests.get is a method defined in Arvados class.
+#' authorized_keys.update is a method defined in Arvados class.
#'
-#' @usage arv$container_requests.get(uuid)
-#' @param uuid The UUID of the ContainerRequest in question.
-#' @return ContainerRequest object.
-#' @name container_requests.get
+#' @usage arv$authorized_keys.update(authorizedkey,
+#' uuid)
+#' @param authorizedKey AuthorizedKey object.
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.update
+NULL
+
+#' authorized_keys.delete is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.delete(uuid)
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.delete
NULL
-#' container_requests.index is a method defined in Arvados class.
+#' authorized_keys.list is a method defined in Arvados class.
#'
-#' @usage arv$container_requests.index(filters = NULL,
+#' @usage arv$authorized_keys.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return ContainerRequestList object.
-#' @name container_requests.index
+#' @return AuthorizedKeyList object.
+#' @name authorized_keys.list
+NULL
+
+#' container_requests.get is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.get(uuid)
+#' @param uuid The UUID of the ContainerRequest in question.
+#' @return ContainerRequest object.
+#' @name container_requests.get
NULL
#' container_requests.create is a method defined in Arvados class.
#' @name container_requests.list
NULL
-#' container_requests.show is a method defined in Arvados class.
+#' collections.get is a method defined in Arvados class.
+#'
+#' @usage arv$collections.get(uuid)
+#' @param uuid The UUID of the Collection in question.
+#' @return Collection object.
+#' @name collections.get
+NULL
+
+#' collections.create is a method defined in Arvados class.
+#'
+#' @usage arv$collections.create(collection,
+#' ensure_unique_name = "false")
+#' @param collection Collection object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Collection object.
+#' @name collections.create
+NULL
+
+#' collections.update is a method defined in Arvados class.
+#'
+#' @usage arv$collections.update(collection,
+#' uuid)
+#' @param collection Collection object.
+#' @param uuid The UUID of the Collection in question.
+#' @return Collection object.
+#' @name collections.update
+NULL
+
+#' collections.delete is a method defined in Arvados class.
+#'
+#' @usage arv$collections.delete(uuid)
+#' @param uuid The UUID of the Collection in question.
+#' @return Collection object.
+#' @name collections.delete
+NULL
+
+#' collections.provenance is a method defined in Arvados class.
#'
-#' @usage arv$container_requests.show(uuid)
+#' @usage arv$collections.provenance(uuid)
#' @param uuid
-#' @return ContainerRequest object.
-#' @name container_requests.show
+#' @return Collection object.
+#' @name collections.provenance
NULL
-#' container_requests.destroy is a method defined in Arvados class.
+#' collections.used_by is a method defined in Arvados class.
#'
-#' @usage arv$container_requests.destroy(uuid)
+#' @usage arv$collections.used_by(uuid)
#' @param uuid
-#' @return ContainerRequest object.
-#' @name container_requests.destroy
+#' @return Collection object.
+#' @name collections.used_by
NULL
-#' authorized_keys.get is a method defined in Arvados class.
+#' collections.trash is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.get(uuid)
-#' @param uuid The UUID of the AuthorizedKey in question.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.get
+#' @usage arv$collections.trash(uuid)
+#' @param uuid
+#' @return Collection object.
+#' @name collections.trash
+NULL
+
+#' collections.untrash is a method defined in Arvados class.
+#'
+#' @usage arv$collections.untrash(uuid)
+#' @param uuid
+#' @return Collection object.
+#' @name collections.untrash
NULL
-#' authorized_keys.index is a method defined in Arvados class.
+#' collections.list is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.index(filters = NULL,
+#' @usage arv$collections.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
+#' count = "exact", include_trash = NULL)
#' @param filters
#' @param where
#' @param order
#' @param limit
#' @param offset
#' @param count
-#' @return AuthorizedKeyList object.
-#' @name authorized_keys.index
+#' @param include_trash Include collections whose is_trashed attribute is true.
+#' @return CollectionList object.
+#' @name collections.list
NULL
-#' authorized_keys.create is a method defined in Arvados class.
+#' humans.get is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.create(authorizedkey,
-#' ensure_unique_name = "false")
-#' @param authorizedKey AuthorizedKey object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.create
+#' @usage arv$humans.get(uuid)
+#' @param uuid The UUID of the Human in question.
+#' @return Human object.
+#' @name humans.get
NULL
-#' authorized_keys.update is a method defined in Arvados class.
+#' humans.create is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.update(authorizedkey,
-#' uuid)
-#' @param authorizedKey AuthorizedKey object.
-#' @param uuid The UUID of the AuthorizedKey in question.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.update
+#' @usage arv$humans.create(human, ensure_unique_name = "false")
+#' @param human Human object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Human object.
+#' @name humans.create
NULL
-#' authorized_keys.delete is a method defined in Arvados class.
+#' humans.update is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.delete(uuid)
-#' @param uuid The UUID of the AuthorizedKey in question.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.delete
+#' @usage arv$humans.update(human, uuid)
+#' @param human Human object.
+#' @param uuid The UUID of the Human in question.
+#' @return Human object.
+#' @name humans.update
NULL
-#' authorized_keys.list is a method defined in Arvados class.
+#' humans.delete is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.list(filters = NULL,
+#' @usage arv$humans.delete(uuid)
+#' @param uuid The UUID of the Human in question.
+#' @return Human object.
+#' @name humans.delete
+NULL
+
+#' humans.list is a method defined in Arvados class.
+#'
+#' @usage arv$humans.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return AuthorizedKeyList object.
-#' @name authorized_keys.list
+#' @return HumanList object.
+#' @name humans.list
NULL
-#' authorized_keys.show is a method defined in Arvados class.
+#' job_tasks.get is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.show(uuid)
-#' @param uuid
-#' @return AuthorizedKey object.
-#' @name authorized_keys.show
+#' @usage arv$job_tasks.get(uuid)
+#' @param uuid The UUID of the JobTask in question.
+#' @return JobTask object.
+#' @name job_tasks.get
NULL
-#' authorized_keys.destroy is a method defined in Arvados class.
+#' job_tasks.create is a method defined in Arvados class.
#'
-#' @usage arv$authorized_keys.destroy(uuid)
-#' @param uuid
-#' @return AuthorizedKey object.
-#' @name authorized_keys.destroy
+#' @usage arv$job_tasks.create(jobtask, ensure_unique_name = "false")
+#' @param jobTask JobTask object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return JobTask object.
+#' @name job_tasks.create
NULL
-#' collections.get is a method defined in Arvados class.
+#' job_tasks.update is a method defined in Arvados class.
#'
-#' @usage arv$collections.get(uuid)
-#' @param uuid The UUID of the Collection in question.
-#' @return Collection object.
-#' @name collections.get
+#' @usage arv$job_tasks.update(jobtask, uuid)
+#' @param jobTask JobTask object.
+#' @param uuid The UUID of the JobTask in question.
+#' @return JobTask object.
+#' @name job_tasks.update
NULL
-#' collections.index is a method defined in Arvados class.
+#' job_tasks.delete is a method defined in Arvados class.
+#'
+#' @usage arv$job_tasks.delete(uuid)
+#' @param uuid The UUID of the JobTask in question.
+#' @return JobTask object.
+#' @name job_tasks.delete
+NULL
+
+#' job_tasks.list is a method defined in Arvados class.
#'
-#' @usage arv$collections.index(filters = NULL,
+#' @usage arv$job_tasks.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact", include_trash = NULL)
+#' count = "exact")
#' @param filters
#' @param where
#' @param order
#' @param limit
#' @param offset
#' @param count
-#' @param include_trash Include collections whose is_trashed attribute is true.
-#' @return CollectionList object.
-#' @name collections.index
+#' @return JobTaskList object.
+#' @name job_tasks.list
NULL
-#' collections.create is a method defined in Arvados class.
+#' links.get is a method defined in Arvados class.
#'
-#' @usage arv$collections.create(collection,
-#' ensure_unique_name = "false")
-#' @param collection Collection object.
+#' @usage arv$links.get(uuid)
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.get
+NULL
+
+#' links.create is a method defined in Arvados class.
+#'
+#' @usage arv$links.create(link, ensure_unique_name = "false")
+#' @param link Link object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Collection object.
-#' @name collections.create
+#' @return Link object.
+#' @name links.create
NULL
-#' collections.update is a method defined in Arvados class.
+#' links.update is a method defined in Arvados class.
#'
-#' @usage arv$collections.update(collection,
-#' uuid)
-#' @param collection Collection object.
-#' @param uuid The UUID of the Collection in question.
-#' @return Collection object.
-#' @name collections.update
+#' @usage arv$links.update(link, uuid)
+#' @param link Link object.
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.update
NULL
-#' collections.delete is a method defined in Arvados class.
+#' links.delete is a method defined in Arvados class.
#'
-#' @usage arv$collections.delete(uuid)
-#' @param uuid The UUID of the Collection in question.
-#' @return Collection object.
-#' @name collections.delete
+#' @usage arv$links.delete(uuid)
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.delete
NULL
-#' collections.provenance is a method defined in Arvados class.
+#' links.list is a method defined in Arvados class.
#'
-#' @usage arv$collections.provenance(uuid)
-#' @param uuid
-#' @return Collection object.
-#' @name collections.provenance
+#' @usage arv$links.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return LinkList object.
+#' @name links.list
NULL
-#' collections.used_by is a method defined in Arvados class.
+#' links.get_permissions is a method defined in Arvados class.
#'
-#' @usage arv$collections.used_by(uuid)
+#' @usage arv$links.get_permissions(uuid)
#' @param uuid
-#' @return Collection object.
-#' @name collections.used_by
+#' @return Link object.
+#' @name links.get_permissions
NULL
-#' collections.trash is a method defined in Arvados class.
+#' jobs.get is a method defined in Arvados class.
#'
-#' @usage arv$collections.trash(uuid)
-#' @param uuid
-#' @return Collection object.
-#' @name collections.trash
+#' @usage arv$jobs.get(uuid)
+#' @param uuid The UUID of the Job in question.
+#' @return Job object.
+#' @name jobs.get
NULL
-#' collections.untrash is a method defined in Arvados class.
+#' jobs.create is a method defined in Arvados class.
#'
-#' @usage arv$collections.untrash(uuid)
-#' @param uuid
-#' @return Collection object.
-#' @name collections.untrash
+#' @usage arv$jobs.create(job, ensure_unique_name = "false",
+#' find_or_create = "false", filters = NULL,
+#' minimum_script_version = NULL, exclude_script_versions = NULL)
+#' @param job Job object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @param find_or_create
+#' @param filters
+#' @param minimum_script_version
+#' @param exclude_script_versions
+#' @return Job object.
+#' @name jobs.create
NULL
-#' collections.list is a method defined in Arvados class.
+#' jobs.update is a method defined in Arvados class.
#'
-#' @usage arv$collections.list(filters = NULL,
+#' @usage arv$jobs.update(job, uuid)
+#' @param job Job object.
+#' @param uuid The UUID of the Job in question.
+#' @return Job object.
+#' @name jobs.update
+NULL
+
+#' jobs.delete is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.delete(uuid)
+#' @param uuid The UUID of the Job in question.
+#' @return Job object.
+#' @name jobs.delete
+NULL
+
+#' jobs.queue is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.queue(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact", include_trash = NULL)
+#' count = "exact")
#' @param filters
#' @param where
#' @param order
#' @param limit
#' @param offset
#' @param count
-#' @param include_trash Include collections whose is_trashed attribute is true.
-#' @return CollectionList object.
-#' @name collections.list
+#' @return Job object.
+#' @name jobs.queue
NULL
-#' collections.show is a method defined in Arvados class.
+#' jobs.queue_size is a method defined in Arvados class.
#'
-#' @usage arv$collections.show(uuid)
-#' @param uuid
-#' @return Collection object.
-#' @name collections.show
+#' @usage arv$jobs.queue_size(NULL)
+#' @return Job object.
+#' @name jobs.queue_size
NULL
-#' collections.destroy is a method defined in Arvados class.
+#' jobs.cancel is a method defined in Arvados class.
#'
-#' @usage arv$collections.destroy(uuid)
+#' @usage arv$jobs.cancel(uuid)
#' @param uuid
-#' @return Collection object.
-#' @name collections.destroy
+#' @return Job object.
+#' @name jobs.cancel
NULL
-#' containers.get is a method defined in Arvados class.
+#' jobs.lock is a method defined in Arvados class.
#'
-#' @usage arv$containers.get(uuid)
-#' @param uuid The UUID of the Container in question.
-#' @return Container object.
-#' @name containers.get
+#' @usage arv$jobs.lock(uuid)
+#' @param uuid
+#' @return Job object.
+#' @name jobs.lock
NULL
-#' containers.index is a method defined in Arvados class.
+#' jobs.list is a method defined in Arvados class.
#'
-#' @usage arv$containers.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
+#' @usage arv$jobs.list(filters = NULL, where = NULL,
+#' order = NULL, select = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact")
#' @param filters
#' @param where
#' @param order
#' @param limit
#' @param offset
#' @param count
-#' @return ContainerList object.
-#' @name containers.index
+#' @return JobList object.
+#' @name jobs.list
NULL
-#' containers.create is a method defined in Arvados class.
+#' keep_disks.get is a method defined in Arvados class.
#'
-#' @usage arv$containers.create(container,
+#' @usage arv$keep_disks.get(uuid)
+#' @param uuid The UUID of the KeepDisk in question.
+#' @return KeepDisk object.
+#' @name keep_disks.get
+NULL
+
+#' keep_disks.create is a method defined in Arvados class.
+#'
+#' @usage arv$keep_disks.create(keepdisk,
#' ensure_unique_name = "false")
-#' @param container Container object.
+#' @param keepDisk KeepDisk object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Container object.
-#' @name containers.create
+#' @return KeepDisk object.
+#' @name keep_disks.create
NULL
-#' containers.update is a method defined in Arvados class.
+#' keep_disks.update is a method defined in Arvados class.
#'
-#' @usage arv$containers.update(container,
+#' @usage arv$keep_disks.update(keepdisk,
#' uuid)
-#' @param container Container object.
-#' @param uuid The UUID of the Container in question.
-#' @return Container object.
-#' @name containers.update
-NULL
-
-#' containers.delete is a method defined in Arvados class.
-#'
-#' @usage arv$containers.delete(uuid)
-#' @param uuid The UUID of the Container in question.
-#' @return Container object.
-#' @name containers.delete
-NULL
-
-#' containers.auth is a method defined in Arvados class.
-#'
-#' @usage arv$containers.auth(uuid)
-#' @param uuid
-#' @return Container object.
-#' @name containers.auth
+#' @param keepDisk KeepDisk object.
+#' @param uuid The UUID of the KeepDisk in question.
+#' @return KeepDisk object.
+#' @name keep_disks.update
NULL
-#' containers.lock is a method defined in Arvados class.
+#' keep_disks.delete is a method defined in Arvados class.
#'
-#' @usage arv$containers.lock(uuid)
-#' @param uuid
-#' @return Container object.
-#' @name containers.lock
+#' @usage arv$keep_disks.delete(uuid)
+#' @param uuid The UUID of the KeepDisk in question.
+#' @return KeepDisk object.
+#' @name keep_disks.delete
NULL
-#' containers.unlock is a method defined in Arvados class.
+#' keep_disks.ping is a method defined in Arvados class.
#'
-#' @usage arv$containers.unlock(uuid)
+#' @usage arv$keep_disks.ping(uuid = NULL,
+#' ping_secret, node_uuid = NULL, filesystem_uuid = NULL,
+#' service_host = NULL, service_port, service_ssl_flag)
#' @param uuid
-#' @return Container object.
-#' @name containers.unlock
-NULL
-
-#' containers.current is a method defined in Arvados class.
-#'
-#' @usage arv$containers.current(NULL)
-#' @return Container object.
-#' @name containers.current
+#' @param ping_secret
+#' @param node_uuid
+#' @param filesystem_uuid
+#' @param service_host
+#' @param service_port
+#' @param service_ssl_flag
+#' @return KeepDisk object.
+#' @name keep_disks.ping
NULL
-#' containers.list is a method defined in Arvados class.
+#' keep_disks.list is a method defined in Arvados class.
#'
-#' @usage arv$containers.list(filters = NULL,
+#' @usage arv$keep_disks.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return ContainerList object.
-#' @name containers.list
-NULL
-
-#' containers.show is a method defined in Arvados class.
-#'
-#' @usage arv$containers.show(uuid)
-#' @param uuid
-#' @return Container object.
-#' @name containers.show
-NULL
-
-#' containers.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$containers.destroy(uuid)
-#' @param uuid
-#' @return Container object.
-#' @name containers.destroy
+#' @return KeepDiskList object.
+#' @name keep_disks.list
NULL
-#' humans.get is a method defined in Arvados class.
+#' keep_services.get is a method defined in Arvados class.
#'
-#' @usage arv$humans.get(uuid)
-#' @param uuid The UUID of the Human in question.
-#' @return Human object.
-#' @name humans.get
+#' @usage arv$keep_services.get(uuid)
+#' @param uuid The UUID of the KeepService in question.
+#' @return KeepService object.
+#' @name keep_services.get
NULL
-#' humans.index is a method defined in Arvados class.
+#' keep_services.create is a method defined in Arvados class.
#'
-#' @usage arv$humans.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return HumanList object.
-#' @name humans.index
+#' @usage arv$keep_services.create(keepservice,
+#' ensure_unique_name = "false")
+#' @param keepService KeepService object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return KeepService object.
+#' @name keep_services.create
NULL
-#' humans.create is a method defined in Arvados class.
+#' keep_services.update is a method defined in Arvados class.
#'
-#' @usage arv$humans.create(human, ensure_unique_name = "false")
-#' @param human Human object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Human object.
-#' @name humans.create
+#' @usage arv$keep_services.update(keepservice,
+#' uuid)
+#' @param keepService KeepService object.
+#' @param uuid The UUID of the KeepService in question.
+#' @return KeepService object.
+#' @name keep_services.update
NULL
-#' humans.update is a method defined in Arvados class.
+#' keep_services.delete is a method defined in Arvados class.
#'
-#' @usage arv$humans.update(human, uuid)
-#' @param human Human object.
-#' @param uuid The UUID of the Human in question.
-#' @return Human object.
-#' @name humans.update
+#' @usage arv$keep_services.delete(uuid)
+#' @param uuid The UUID of the KeepService in question.
+#' @return KeepService object.
+#' @name keep_services.delete
NULL
-#' humans.delete is a method defined in Arvados class.
+#' keep_services.accessible is a method defined in Arvados class.
#'
-#' @usage arv$humans.delete(uuid)
-#' @param uuid The UUID of the Human in question.
-#' @return Human object.
-#' @name humans.delete
+#' @usage arv$keep_services.accessible(NULL)
+#' @return KeepService object.
+#' @name keep_services.accessible
NULL
-#' humans.list is a method defined in Arvados class.
+#' keep_services.list is a method defined in Arvados class.
#'
-#' @usage arv$humans.list(filters = NULL,
+#' @usage arv$keep_services.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return HumanList object.
-#' @name humans.list
+#' @return KeepServiceList object.
+#' @name keep_services.list
NULL
-#' humans.show is a method defined in Arvados class.
+#' pipeline_templates.get is a method defined in Arvados class.
#'
-#' @usage arv$humans.show(uuid)
-#' @param uuid
-#' @return Human object.
-#' @name humans.show
+#' @usage arv$pipeline_templates.get(uuid)
+#' @param uuid The UUID of the PipelineTemplate in question.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.get
NULL
-#' humans.destroy is a method defined in Arvados class.
+#' pipeline_templates.create is a method defined in Arvados class.
#'
-#' @usage arv$humans.destroy(uuid)
-#' @param uuid
-#' @return Human object.
-#' @name humans.destroy
+#' @usage arv$pipeline_templates.create(pipelinetemplate,
+#' ensure_unique_name = "false")
+#' @param pipelineTemplate PipelineTemplate object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.create
NULL
-#' job_tasks.get is a method defined in Arvados class.
+#' pipeline_templates.update is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.get(uuid)
-#' @param uuid The UUID of the JobTask in question.
-#' @return JobTask object.
-#' @name job_tasks.get
+#' @usage arv$pipeline_templates.update(pipelinetemplate,
+#' uuid)
+#' @param pipelineTemplate PipelineTemplate object.
+#' @param uuid The UUID of the PipelineTemplate in question.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.update
+NULL
+
+#' pipeline_templates.delete is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_templates.delete(uuid)
+#' @param uuid The UUID of the PipelineTemplate in question.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.delete
NULL
-#' job_tasks.index is a method defined in Arvados class.
+#' pipeline_templates.list is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.index(filters = NULL,
+#' @usage arv$pipeline_templates.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return JobTaskList object.
-#' @name job_tasks.index
+#' @return PipelineTemplateList object.
+#' @name pipeline_templates.list
NULL
-#' job_tasks.create is a method defined in Arvados class.
+#' pipeline_instances.get is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.create(jobtask, ensure_unique_name = "false")
-#' @param jobTask JobTask object.
+#' @usage arv$pipeline_instances.get(uuid)
+#' @param uuid The UUID of the PipelineInstance in question.
+#' @return PipelineInstance object.
+#' @name pipeline_instances.get
+NULL
+
+#' pipeline_instances.create is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.create(pipelineinstance,
+#' ensure_unique_name = "false")
+#' @param pipelineInstance PipelineInstance object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return JobTask object.
-#' @name job_tasks.create
+#' @return PipelineInstance object.
+#' @name pipeline_instances.create
NULL
-#' job_tasks.update is a method defined in Arvados class.
+#' pipeline_instances.update is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.update(jobtask, uuid)
-#' @param jobTask JobTask object.
-#' @param uuid The UUID of the JobTask in question.
-#' @return JobTask object.
-#' @name job_tasks.update
+#' @usage arv$pipeline_instances.update(pipelineinstance,
+#' uuid)
+#' @param pipelineInstance PipelineInstance object.
+#' @param uuid The UUID of the PipelineInstance in question.
+#' @return PipelineInstance object.
+#' @name pipeline_instances.update
NULL
-#' job_tasks.delete is a method defined in Arvados class.
+#' pipeline_instances.delete is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.delete(uuid)
-#' @param uuid The UUID of the JobTask in question.
-#' @return JobTask object.
-#' @name job_tasks.delete
+#' @usage arv$pipeline_instances.delete(uuid)
+#' @param uuid The UUID of the PipelineInstance in question.
+#' @return PipelineInstance object.
+#' @name pipeline_instances.delete
NULL
-#' job_tasks.list is a method defined in Arvados class.
+#' pipeline_instances.cancel is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.list(filters = NULL,
+#' @usage arv$pipeline_instances.cancel(uuid)
+#' @param uuid
+#' @return PipelineInstance object.
+#' @name pipeline_instances.cancel
+NULL
+
+#' pipeline_instances.list is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return JobTaskList object.
-#' @name job_tasks.list
+#' @return PipelineInstanceList object.
+#' @name pipeline_instances.list
NULL
-#' job_tasks.show is a method defined in Arvados class.
+#' nodes.get is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.show(uuid)
-#' @param uuid
-#' @return JobTask object.
-#' @name job_tasks.show
+#' @usage arv$nodes.get(uuid)
+#' @param uuid The UUID of the Node in question.
+#' @return Node object.
+#' @name nodes.get
NULL
-#' job_tasks.destroy is a method defined in Arvados class.
+#' nodes.create is a method defined in Arvados class.
#'
-#' @usage arv$job_tasks.destroy(uuid)
-#' @param uuid
-#' @return JobTask object.
-#' @name job_tasks.destroy
+#' @usage arv$nodes.create(node, ensure_unique_name = "false",
+#' assign_slot = NULL)
+#' @param node Node object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @param assign_slot assign slot and hostname
+#' @return Node object.
+#' @name nodes.create
NULL
-#' links.get is a method defined in Arvados class.
+#' nodes.update is a method defined in Arvados class.
#'
-#' @usage arv$links.get(uuid)
-#' @param uuid The UUID of the Link in question.
-#' @return Link object.
-#' @name links.get
+#' @usage arv$nodes.update(node, uuid, assign_slot = NULL)
+#' @param node Node object.
+#' @param uuid The UUID of the Node in question.
+#' @param assign_slot assign slot and hostname
+#' @return Node object.
+#' @name nodes.update
+NULL
+
+#' nodes.delete is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.delete(uuid)
+#' @param uuid The UUID of the Node in question.
+#' @return Node object.
+#' @name nodes.delete
+NULL
+
+#' nodes.ping is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.ping(uuid, ping_secret)
+#' @param uuid
+#' @param ping_secret
+#' @return Node object.
+#' @name nodes.ping
NULL
-#' links.index is a method defined in Arvados class.
+#' nodes.list is a method defined in Arvados class.
#'
-#' @usage arv$links.index(filters = NULL,
+#' @usage arv$nodes.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return LinkList object.
-#' @name links.index
+#' @return NodeList object.
+#' @name nodes.list
NULL
-#' links.create is a method defined in Arvados class.
+#' repositories.get is a method defined in Arvados class.
#'
-#' @usage arv$links.create(link, ensure_unique_name = "false")
-#' @param link Link object.
+#' @usage arv$repositories.get(uuid)
+#' @param uuid The UUID of the Repository in question.
+#' @return Repository object.
+#' @name repositories.get
+NULL
+
+#' repositories.create is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.create(repository,
+#' ensure_unique_name = "false")
+#' @param repository Repository object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Link object.
-#' @name links.create
+#' @return Repository object.
+#' @name repositories.create
NULL
-#' links.update is a method defined in Arvados class.
+#' repositories.update is a method defined in Arvados class.
#'
-#' @usage arv$links.update(link, uuid)
-#' @param link Link object.
-#' @param uuid The UUID of the Link in question.
-#' @return Link object.
-#' @name links.update
+#' @usage arv$repositories.update(repository,
+#' uuid)
+#' @param repository Repository object.
+#' @param uuid The UUID of the Repository in question.
+#' @return Repository object.
+#' @name repositories.update
NULL
-#' links.delete is a method defined in Arvados class.
+#' repositories.delete is a method defined in Arvados class.
#'
-#' @usage arv$links.delete(uuid)
-#' @param uuid The UUID of the Link in question.
-#' @return Link object.
-#' @name links.delete
+#' @usage arv$repositories.delete(uuid)
+#' @param uuid The UUID of the Repository in question.
+#' @return Repository object.
+#' @name repositories.delete
NULL
-#' links.list is a method defined in Arvados class.
+#' repositories.get_all_permissions is a method defined in Arvados class.
#'
-#' @usage arv$links.list(filters = NULL,
+#' @usage arv$repositories.get_all_permissions(NULL)
+#' @return Repository object.
+#' @name repositories.get_all_permissions
+NULL
+
+#' repositories.list is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return LinkList object.
-#' @name links.list
+#' @return RepositoryList object.
+#' @name repositories.list
NULL
-#' links.show is a method defined in Arvados class.
+#' specimens.get is a method defined in Arvados class.
#'
-#' @usage arv$links.show(uuid)
-#' @param uuid
-#' @return Link object.
-#' @name links.show
+#' @usage arv$specimens.get(uuid)
+#' @param uuid The UUID of the Specimen in question.
+#' @return Specimen object.
+#' @name specimens.get
NULL
-#' links.destroy is a method defined in Arvados class.
+#' specimens.create is a method defined in Arvados class.
#'
-#' @usage arv$links.destroy(uuid)
-#' @param uuid
-#' @return Link object.
-#' @name links.destroy
+#' @usage arv$specimens.create(specimen,
+#' ensure_unique_name = "false")
+#' @param specimen Specimen object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Specimen object.
+#' @name specimens.create
NULL
-#' links.get_permissions is a method defined in Arvados class.
+#' specimens.update is a method defined in Arvados class.
#'
-#' @usage arv$links.get_permissions(uuid)
-#' @param uuid
-#' @return Link object.
-#' @name links.get_permissions
+#' @usage arv$specimens.update(specimen,
+#' uuid)
+#' @param specimen Specimen object.
+#' @param uuid The UUID of the Specimen in question.
+#' @return Specimen object.
+#' @name specimens.update
NULL
-#' jobs.get is a method defined in Arvados class.
+#' specimens.delete is a method defined in Arvados class.
#'
-#' @usage arv$jobs.get(uuid)
-#' @param uuid The UUID of the Job in question.
-#' @return Job object.
-#' @name jobs.get
+#' @usage arv$specimens.delete(uuid)
+#' @param uuid The UUID of the Specimen in question.
+#' @return Specimen object.
+#' @name specimens.delete
NULL
-#' jobs.index is a method defined in Arvados class.
+#' specimens.list is a method defined in Arvados class.
#'
-#' @usage arv$jobs.index(filters = NULL,
+#' @usage arv$specimens.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return JobList object.
-#' @name jobs.index
+#' @return SpecimenList object.
+#' @name specimens.list
NULL
-#' jobs.create is a method defined in Arvados class.
+#' logs.get is a method defined in Arvados class.
#'
-#' @usage arv$jobs.create(job, ensure_unique_name = "false",
-#' find_or_create = "false", filters = NULL,
-#' minimum_script_version = NULL, exclude_script_versions = NULL)
-#' @param job Job object.
+#' @usage arv$logs.get(uuid)
+#' @param uuid The UUID of the Log in question.
+#' @return Log object.
+#' @name logs.get
+NULL
+
+#' logs.create is a method defined in Arvados class.
+#'
+#' @usage arv$logs.create(log, ensure_unique_name = "false")
+#' @param log Log object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @param find_or_create
-#' @param filters
-#' @param minimum_script_version
-#' @param exclude_script_versions
-#' @return Job object.
-#' @name jobs.create
+#' @return Log object.
+#' @name logs.create
NULL
-#' jobs.update is a method defined in Arvados class.
+#' logs.update is a method defined in Arvados class.
#'
-#' @usage arv$jobs.update(job, uuid)
-#' @param job Job object.
-#' @param uuid The UUID of the Job in question.
-#' @return Job object.
-#' @name jobs.update
+#' @usage arv$logs.update(log, uuid)
+#' @param log Log object.
+#' @param uuid The UUID of the Log in question.
+#' @return Log object.
+#' @name logs.update
NULL
-#' jobs.delete is a method defined in Arvados class.
+#' logs.delete is a method defined in Arvados class.
#'
-#' @usage arv$jobs.delete(uuid)
-#' @param uuid The UUID of the Job in question.
-#' @return Job object.
-#' @name jobs.delete
+#' @usage arv$logs.delete(uuid)
+#' @param uuid The UUID of the Log in question.
+#' @return Log object.
+#' @name logs.delete
NULL
-#' jobs.queue is a method defined in Arvados class.
+#' logs.list is a method defined in Arvados class.
#'
-#' @usage arv$jobs.queue(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
+#' @usage arv$logs.list(filters = NULL, where = NULL,
+#' order = NULL, select = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact")
#' @param filters
#' @param where
#' @param order
#' @param limit
#' @param offset
#' @param count
-#' @return Job object.
-#' @name jobs.queue
+#' @return LogList object.
+#' @name logs.list
NULL
-#' jobs.queue_size is a method defined in Arvados class.
+#' traits.get is a method defined in Arvados class.
#'
-#' @usage arv$jobs.queue_size(NULL)
-#' @return Job object.
-#' @name jobs.queue_size
+#' @usage arv$traits.get(uuid)
+#' @param uuid The UUID of the Trait in question.
+#' @return Trait object.
+#' @name traits.get
NULL
-#' jobs.cancel is a method defined in Arvados class.
+#' traits.create is a method defined in Arvados class.
#'
-#' @usage arv$jobs.cancel(uuid)
-#' @param uuid
-#' @return Job object.
-#' @name jobs.cancel
+#' @usage arv$traits.create(trait, ensure_unique_name = "false")
+#' @param trait Trait object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Trait object.
+#' @name traits.create
NULL
-#' jobs.lock is a method defined in Arvados class.
+#' traits.update is a method defined in Arvados class.
#'
-#' @usage arv$jobs.lock(uuid)
-#' @param uuid
-#' @return Job object.
-#' @name jobs.lock
+#' @usage arv$traits.update(trait, uuid)
+#' @param trait Trait object.
+#' @param uuid The UUID of the Trait in question.
+#' @return Trait object.
+#' @name traits.update
NULL
-#' jobs.list is a method defined in Arvados class.
+#' traits.delete is a method defined in Arvados class.
#'
-#' @usage arv$jobs.list(filters = NULL, where = NULL,
-#' order = NULL, select = NULL, distinct = NULL,
-#' limit = "100", offset = "0", count = "exact")
+#' @usage arv$traits.delete(uuid)
+#' @param uuid The UUID of the Trait in question.
+#' @return Trait object.
+#' @name traits.delete
+NULL
+
+#' traits.list is a method defined in Arvados class.
+#'
+#' @usage arv$traits.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
#' @param filters
#' @param where
#' @param order
#' @param limit
#' @param offset
#' @param count
-#' @return JobList object.
-#' @name jobs.list
+#' @return TraitList object.
+#' @name traits.list
NULL
-#' jobs.show is a method defined in Arvados class.
+#' virtual_machines.get is a method defined in Arvados class.
#'
-#' @usage arv$jobs.show(uuid)
-#' @param uuid
-#' @return Job object.
-#' @name jobs.show
-NULL
-
-#' jobs.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$jobs.destroy(uuid)
-#' @param uuid
-#' @return Job object.
-#' @name jobs.destroy
-NULL
-
-#' keep_disks.get is a method defined in Arvados class.
-#'
-#' @usage arv$keep_disks.get(uuid)
-#' @param uuid The UUID of the KeepDisk in question.
-#' @return KeepDisk object.
-#' @name keep_disks.get
-NULL
-
-#' keep_disks.index is a method defined in Arvados class.
-#'
-#' @usage arv$keep_disks.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return KeepDiskList object.
-#' @name keep_disks.index
+#' @usage arv$virtual_machines.get(uuid)
+#' @param uuid The UUID of the VirtualMachine in question.
+#' @return VirtualMachine object.
+#' @name virtual_machines.get
NULL
-#' keep_disks.create is a method defined in Arvados class.
+#' virtual_machines.create is a method defined in Arvados class.
#'
-#' @usage arv$keep_disks.create(keepdisk,
+#' @usage arv$virtual_machines.create(virtualmachine,
#' ensure_unique_name = "false")
-#' @param keepDisk KeepDisk object.
+#' @param virtualMachine VirtualMachine object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return KeepDisk object.
-#' @name keep_disks.create
+#' @return VirtualMachine object.
+#' @name virtual_machines.create
NULL
-#' keep_disks.update is a method defined in Arvados class.
+#' virtual_machines.update is a method defined in Arvados class.
#'
-#' @usage arv$keep_disks.update(keepdisk,
+#' @usage arv$virtual_machines.update(virtualmachine,
#' uuid)
-#' @param keepDisk KeepDisk object.
-#' @param uuid The UUID of the KeepDisk in question.
-#' @return KeepDisk object.
-#' @name keep_disks.update
+#' @param virtualMachine VirtualMachine object.
+#' @param uuid The UUID of the VirtualMachine in question.
+#' @return VirtualMachine object.
+#' @name virtual_machines.update
NULL
-#' keep_disks.delete is a method defined in Arvados class.
+#' virtual_machines.delete is a method defined in Arvados class.
#'
-#' @usage arv$keep_disks.delete(uuid)
-#' @param uuid The UUID of the KeepDisk in question.
-#' @return KeepDisk object.
-#' @name keep_disks.delete
+#' @usage arv$virtual_machines.delete(uuid)
+#' @param uuid The UUID of the VirtualMachine in question.
+#' @return VirtualMachine object.
+#' @name virtual_machines.delete
NULL
-#' keep_disks.ping is a method defined in Arvados class.
+#' virtual_machines.logins is a method defined in Arvados class.
#'
-#' @usage arv$keep_disks.ping(uuid = NULL,
-#' ping_secret, node_uuid = NULL, filesystem_uuid = NULL,
-#' service_host = NULL, service_port, service_ssl_flag)
+#' @usage arv$virtual_machines.logins(uuid)
#' @param uuid
-#' @param ping_secret
-#' @param node_uuid
-#' @param filesystem_uuid
-#' @param service_host
-#' @param service_port
-#' @param service_ssl_flag
-#' @return KeepDisk object.
-#' @name keep_disks.ping
+#' @return VirtualMachine object.
+#' @name virtual_machines.logins
NULL
-#' keep_disks.list is a method defined in Arvados class.
+#' virtual_machines.get_all_logins is a method defined in Arvados class.
#'
-#' @usage arv$keep_disks.list(filters = NULL,
+#' @usage arv$virtual_machines.get_all_logins(NULL)
+#' @return VirtualMachine object.
+#' @name virtual_machines.get_all_logins
+NULL
+
+#' virtual_machines.list is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return KeepDiskList object.
-#' @name keep_disks.list
+#' @return VirtualMachineList object.
+#' @name virtual_machines.list
NULL
-#' keep_disks.show is a method defined in Arvados class.
+#' workflows.get is a method defined in Arvados class.
#'
-#' @usage arv$keep_disks.show(uuid)
-#' @param uuid
-#' @return KeepDisk object.
-#' @name keep_disks.show
+#' @usage arv$workflows.get(uuid)
+#' @param uuid The UUID of the Workflow in question.
+#' @return Workflow object.
+#' @name workflows.get
NULL
-#' keep_disks.destroy is a method defined in Arvados class.
+#' workflows.create is a method defined in Arvados class.
#'
-#' @usage arv$keep_disks.destroy(uuid)
-#' @param uuid
-#' @return KeepDisk object.
-#' @name keep_disks.destroy
+#' @usage arv$workflows.create(workflow,
+#' ensure_unique_name = "false")
+#' @param workflow Workflow object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Workflow object.
+#' @name workflows.create
NULL
-#' keep_services.get is a method defined in Arvados class.
+#' workflows.update is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.get(uuid)
-#' @param uuid The UUID of the KeepService in question.
-#' @return KeepService object.
-#' @name keep_services.get
+#' @usage arv$workflows.update(workflow,
+#' uuid)
+#' @param workflow Workflow object.
+#' @param uuid The UUID of the Workflow in question.
+#' @return Workflow object.
+#' @name workflows.update
+NULL
+
+#' workflows.delete is a method defined in Arvados class.
+#'
+#' @usage arv$workflows.delete(uuid)
+#' @param uuid The UUID of the Workflow in question.
+#' @return Workflow object.
+#' @name workflows.delete
NULL
-#' keep_services.index is a method defined in Arvados class.
+#' workflows.list is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.index(filters = NULL,
+#' @usage arv$workflows.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return KeepServiceList object.
-#' @name keep_services.index
+#' @return WorkflowList object.
+#' @name workflows.list
NULL
-#' keep_services.create is a method defined in Arvados class.
+#' groups.get is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.create(keepservice,
-#' ensure_unique_name = "false")
-#' @param keepService KeepService object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return KeepService object.
-#' @name keep_services.create
+#' @usage arv$groups.get(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name groups.get
NULL
-#' keep_services.update is a method defined in Arvados class.
+#' groups.create is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.update(keepservice,
-#' uuid)
-#' @param keepService KeepService object.
-#' @param uuid The UUID of the KeepService in question.
-#' @return KeepService object.
-#' @name keep_services.update
+#' @usage arv$groups.create(group, ensure_unique_name = "false")
+#' @param group Group object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Group object.
+#' @name groups.create
NULL
-#' keep_services.delete is a method defined in Arvados class.
+#' groups.update is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.delete(uuid)
-#' @param uuid The UUID of the KeepService in question.
-#' @return KeepService object.
-#' @name keep_services.delete
+#' @usage arv$groups.update(group, uuid)
+#' @param group Group object.
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name groups.update
NULL
-#' keep_services.accessible is a method defined in Arvados class.
+#' groups.delete is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.accessible(NULL)
-#' @return KeepService object.
-#' @name keep_services.accessible
+#' @usage arv$groups.delete(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name groups.delete
NULL
-#' keep_services.list is a method defined in Arvados class.
+#' groups.contents is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
+#' @usage arv$groups.contents(filters = NULL,
+#' where = NULL, order = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact",
+#' include_trash = NULL, uuid = NULL, recursive = NULL)
#' @param filters
#' @param where
#' @param order
-#' @param select
#' @param distinct
#' @param limit
#' @param offset
#' @param count
-#' @return KeepServiceList object.
-#' @name keep_services.list
-NULL
-
-#' keep_services.show is a method defined in Arvados class.
-#'
-#' @usage arv$keep_services.show(uuid)
+#' @param include_trash Include items whose is_trashed attribute is true.
#' @param uuid
-#' @return KeepService object.
-#' @name keep_services.show
+#' @param recursive Include contents from child groups recursively.
+#' @return Group object.
+#' @name groups.contents
NULL
-#' keep_services.destroy is a method defined in Arvados class.
+#' groups.trash is a method defined in Arvados class.
#'
-#' @usage arv$keep_services.destroy(uuid)
+#' @usage arv$groups.trash(uuid)
#' @param uuid
-#' @return KeepService object.
-#' @name keep_services.destroy
+#' @return Group object.
+#' @name groups.trash
NULL
-#' pipeline_templates.get is a method defined in Arvados class.
+#' groups.untrash is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_templates.get(uuid)
-#' @param uuid The UUID of the PipelineTemplate in question.
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.get
+#' @usage arv$groups.untrash(uuid)
+#' @param uuid
+#' @return Group object.
+#' @name groups.untrash
NULL
-#' pipeline_templates.index is a method defined in Arvados class.
+#' groups.list is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_templates.index(filters = NULL,
+#' @usage arv$groups.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
+#' count = "exact", include_trash = NULL)
#' @param filters
#' @param where
#' @param order
#' @param limit
#' @param offset
#' @param count
-#' @return PipelineTemplateList object.
-#' @name pipeline_templates.index
+#' @param include_trash Include items whose is_trashed attribute is true.
+#' @return GroupList object.
+#' @name groups.list
NULL
-#' pipeline_templates.create is a method defined in Arvados class.
+#' user_agreements.get is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_templates.create(pipelinetemplate,
+#' @usage arv$user_agreements.get(uuid)
+#' @param uuid The UUID of the UserAgreement in question.
+#' @return UserAgreement object.
+#' @name user_agreements.get
+NULL
+
+#' user_agreements.create is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.create(useragreement,
#' ensure_unique_name = "false")
-#' @param pipelineTemplate PipelineTemplate object.
+#' @param userAgreement UserAgreement object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.create
+#' @return UserAgreement object.
+#' @name user_agreements.create
NULL
-#' pipeline_templates.update is a method defined in Arvados class.
+#' user_agreements.update is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_templates.update(pipelinetemplate,
+#' @usage arv$user_agreements.update(useragreement,
#' uuid)
-#' @param pipelineTemplate PipelineTemplate object.
-#' @param uuid The UUID of the PipelineTemplate in question.
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.update
+#' @param userAgreement UserAgreement object.
+#' @param uuid The UUID of the UserAgreement in question.
+#' @return UserAgreement object.
+#' @name user_agreements.update
NULL
-#' pipeline_templates.delete is a method defined in Arvados class.
+#' user_agreements.delete is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_templates.delete(uuid)
-#' @param uuid The UUID of the PipelineTemplate in question.
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.delete
-NULL
-
-#' pipeline_templates.list is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_templates.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return PipelineTemplateList object.
-#' @name pipeline_templates.list
-NULL
-
-#' pipeline_templates.show is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_templates.show(uuid)
-#' @param uuid
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.show
-NULL
-
-#' pipeline_templates.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_templates.destroy(uuid)
-#' @param uuid
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.destroy
-NULL
-
-#' pipeline_instances.get is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.get(uuid)
-#' @param uuid The UUID of the PipelineInstance in question.
-#' @return PipelineInstance object.
-#' @name pipeline_instances.get
-NULL
-
-#' pipeline_instances.index is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return PipelineInstanceList object.
-#' @name pipeline_instances.index
-NULL
-
-#' pipeline_instances.create is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.create(pipelineinstance,
-#' ensure_unique_name = "false")
-#' @param pipelineInstance PipelineInstance object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return PipelineInstance object.
-#' @name pipeline_instances.create
-NULL
-
-#' pipeline_instances.update is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.update(pipelineinstance,
-#' uuid)
-#' @param pipelineInstance PipelineInstance object.
-#' @param uuid The UUID of the PipelineInstance in question.
-#' @return PipelineInstance object.
-#' @name pipeline_instances.update
+#' @usage arv$user_agreements.delete(uuid)
+#' @param uuid The UUID of the UserAgreement in question.
+#' @return UserAgreement object.
+#' @name user_agreements.delete
NULL
-#' pipeline_instances.delete is a method defined in Arvados class.
+#' user_agreements.signatures is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_instances.delete(uuid)
-#' @param uuid The UUID of the PipelineInstance in question.
-#' @return PipelineInstance object.
-#' @name pipeline_instances.delete
+#' @usage arv$user_agreements.signatures(NULL)
+#' @return UserAgreement object.
+#' @name user_agreements.signatures
NULL
-#' pipeline_instances.cancel is a method defined in Arvados class.
+#' user_agreements.sign is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_instances.cancel(uuid)
-#' @param uuid
-#' @return PipelineInstance object.
-#' @name pipeline_instances.cancel
+#' @usage arv$user_agreements.sign(NULL)
+#' @return UserAgreement object.
+#' @name user_agreements.sign
NULL
-#' pipeline_instances.list is a method defined in Arvados class.
+#' user_agreements.list is a method defined in Arvados class.
#'
-#' @usage arv$pipeline_instances.list(filters = NULL,
+#' @usage arv$user_agreements.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return PipelineInstanceList object.
-#' @name pipeline_instances.list
-NULL
-
-#' pipeline_instances.show is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.show(uuid)
-#' @param uuid
-#' @return PipelineInstance object.
-#' @name pipeline_instances.show
-NULL
-
-#' pipeline_instances.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.destroy(uuid)
-#' @param uuid
-#' @return PipelineInstance object.
-#' @name pipeline_instances.destroy
-NULL
-
-#' nodes.get is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.get(uuid)
-#' @param uuid The UUID of the Node in question.
-#' @return Node object.
-#' @name nodes.get
+#' @return UserAgreementList object.
+#' @name user_agreements.list
NULL
-#' nodes.index is a method defined in Arvados class.
+#' user_agreements.new is a method defined in Arvados class.
#'
-#' @usage arv$nodes.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return NodeList object.
-#' @name nodes.index
+#' @usage arv$user_agreements.new(NULL)
+#' @return UserAgreement object.
+#' @name user_agreements.new
NULL
-#' nodes.create is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.create(node, ensure_unique_name = "false",
-#' assign_slot = NULL)
-#' @param node Node object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @param assign_slot assign slot and hostname
-#' @return Node object.
-#' @name nodes.create
+#' Arvados
+#'
+#' Arvados class gives users ability to manipulate collections and projects.
+#'
+#' @section Usage:
+#' \preformatted{arv = Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)}
+#'
+#' @section Arguments:
+#' \describe{
+#' \item{authToken}{Authentification token. If not specified ARVADOS_API_TOKEN environment variable will be used.}
+#' \item{hostName}{Host name. If not specified ARVADOS_API_HOST environment variable will be used.}
+#' \item{numRetries}{Number which specifies how many times to retry failed service requests.}
+#' }
+#'
+#' @section Methods:
+#' \describe{
+#' \item{}{\code{\link{api_client_authorizations.create}}}
+#' \item{}{\code{\link{api_client_authorizations.create_system_auth}}}
+#' \item{}{\code{\link{api_client_authorizations.current}}}
+#' \item{}{\code{\link{api_client_authorizations.delete}}}
+#' \item{}{\code{\link{api_client_authorizations.get}}}
+#' \item{}{\code{\link{api_client_authorizations.list}}}
+#' \item{}{\code{\link{api_client_authorizations.update}}}
+#' \item{}{\code{\link{api_clients.create}}}
+#' \item{}{\code{\link{api_clients.delete}}}
+#' \item{}{\code{\link{api_clients.get}}}
+#' \item{}{\code{\link{api_clients.list}}}
+#' \item{}{\code{\link{api_clients.update}}}
+#' \item{}{\code{\link{authorized_keys.create}}}
+#' \item{}{\code{\link{authorized_keys.delete}}}
+#' \item{}{\code{\link{authorized_keys.get}}}
+#' \item{}{\code{\link{authorized_keys.list}}}
+#' \item{}{\code{\link{authorized_keys.update}}}
+#' \item{}{\code{\link{collections.create}}}
+#' \item{}{\code{\link{collections.delete}}}
+#' \item{}{\code{\link{collections.get}}}
+#' \item{}{\code{\link{collections.list}}}
+#' \item{}{\code{\link{collections.provenance}}}
+#' \item{}{\code{\link{collections.trash}}}
+#' \item{}{\code{\link{collections.untrash}}}
+#' \item{}{\code{\link{collections.update}}}
+#' \item{}{\code{\link{collections.used_by}}}
+#' \item{}{\code{\link{container_requests.create}}}
+#' \item{}{\code{\link{container_requests.delete}}}
+#' \item{}{\code{\link{container_requests.get}}}
+#' \item{}{\code{\link{container_requests.list}}}
+#' \item{}{\code{\link{container_requests.update}}}
+#' \item{}{\code{\link{containers.auth}}}
+#' \item{}{\code{\link{containers.create}}}
+#' \item{}{\code{\link{containers.current}}}
+#' \item{}{\code{\link{containers.delete}}}
+#' \item{}{\code{\link{containers.get}}}
+#' \item{}{\code{\link{containers.list}}}
+#' \item{}{\code{\link{containers.lock}}}
+#' \item{}{\code{\link{containers.secret_mounts}}}
+#' \item{}{\code{\link{containers.unlock}}}
+#' \item{}{\code{\link{containers.update}}}
+#' \item{}{\code{\link{groups.contents}}}
+#' \item{}{\code{\link{groups.create}}}
+#' \item{}{\code{\link{groups.delete}}}
+#' \item{}{\code{\link{groups.get}}}
+#' \item{}{\code{\link{groups.list}}}
+#' \item{}{\code{\link{groups.trash}}}
+#' \item{}{\code{\link{groups.untrash}}}
+#' \item{}{\code{\link{groups.update}}}
+#' \item{}{\code{\link{humans.create}}}
+#' \item{}{\code{\link{humans.delete}}}
+#' \item{}{\code{\link{humans.get}}}
+#' \item{}{\code{\link{humans.list}}}
+#' \item{}{\code{\link{humans.update}}}
+#' \item{}{\code{\link{jobs.cancel}}}
+#' \item{}{\code{\link{jobs.create}}}
+#' \item{}{\code{\link{jobs.delete}}}
+#' \item{}{\code{\link{jobs.get}}}
+#' \item{}{\code{\link{jobs.list}}}
+#' \item{}{\code{\link{jobs.lock}}}
+#' \item{}{\code{\link{jobs.queue}}}
+#' \item{}{\code{\link{jobs.queue_size}}}
+#' \item{}{\code{\link{jobs.update}}}
+#' \item{}{\code{\link{job_tasks.create}}}
+#' \item{}{\code{\link{job_tasks.delete}}}
+#' \item{}{\code{\link{job_tasks.get}}}
+#' \item{}{\code{\link{job_tasks.list}}}
+#' \item{}{\code{\link{job_tasks.update}}}
+#' \item{}{\code{\link{keep_disks.create}}}
+#' \item{}{\code{\link{keep_disks.delete}}}
+#' \item{}{\code{\link{keep_disks.get}}}
+#' \item{}{\code{\link{keep_disks.list}}}
+#' \item{}{\code{\link{keep_disks.ping}}}
+#' \item{}{\code{\link{keep_disks.update}}}
+#' \item{}{\code{\link{keep_services.accessible}}}
+#' \item{}{\code{\link{keep_services.create}}}
+#' \item{}{\code{\link{keep_services.delete}}}
+#' \item{}{\code{\link{keep_services.get}}}
+#' \item{}{\code{\link{keep_services.list}}}
+#' \item{}{\code{\link{keep_services.update}}}
+#' \item{}{\code{\link{links.create}}}
+#' \item{}{\code{\link{links.delete}}}
+#' \item{}{\code{\link{links.get}}}
+#' \item{}{\code{\link{links.get_permissions}}}
+#' \item{}{\code{\link{links.list}}}
+#' \item{}{\code{\link{links.update}}}
+#' \item{}{\code{\link{logs.create}}}
+#' \item{}{\code{\link{logs.delete}}}
+#' \item{}{\code{\link{logs.get}}}
+#' \item{}{\code{\link{logs.list}}}
+#' \item{}{\code{\link{logs.update}}}
+#' \item{}{\code{\link{nodes.create}}}
+#' \item{}{\code{\link{nodes.delete}}}
+#' \item{}{\code{\link{nodes.get}}}
+#' \item{}{\code{\link{nodes.list}}}
+#' \item{}{\code{\link{nodes.ping}}}
+#' \item{}{\code{\link{nodes.update}}}
+#' \item{}{\code{\link{pipeline_instances.cancel}}}
+#' \item{}{\code{\link{pipeline_instances.create}}}
+#' \item{}{\code{\link{pipeline_instances.delete}}}
+#' \item{}{\code{\link{pipeline_instances.get}}}
+#' \item{}{\code{\link{pipeline_instances.list}}}
+#' \item{}{\code{\link{pipeline_instances.update}}}
+#' \item{}{\code{\link{pipeline_templates.create}}}
+#' \item{}{\code{\link{pipeline_templates.delete}}}
+#' \item{}{\code{\link{pipeline_templates.get}}}
+#' \item{}{\code{\link{pipeline_templates.list}}}
+#' \item{}{\code{\link{pipeline_templates.update}}}
+#' \item{}{\code{\link{projects.create}}}
+#' \item{}{\code{\link{projects.delete}}}
+#' \item{}{\code{\link{projects.get}}}
+#' \item{}{\code{\link{projects.list}}}
+#' \item{}{\code{\link{projects.update}}}
+#' \item{}{\code{\link{repositories.create}}}
+#' \item{}{\code{\link{repositories.delete}}}
+#' \item{}{\code{\link{repositories.get}}}
+#' \item{}{\code{\link{repositories.get_all_permissions}}}
+#' \item{}{\code{\link{repositories.list}}}
+#' \item{}{\code{\link{repositories.update}}}
+#' \item{}{\code{\link{specimens.create}}}
+#' \item{}{\code{\link{specimens.delete}}}
+#' \item{}{\code{\link{specimens.get}}}
+#' \item{}{\code{\link{specimens.list}}}
+#' \item{}{\code{\link{specimens.update}}}
+#' \item{}{\code{\link{traits.create}}}
+#' \item{}{\code{\link{traits.delete}}}
+#' \item{}{\code{\link{traits.get}}}
+#' \item{}{\code{\link{traits.list}}}
+#' \item{}{\code{\link{traits.update}}}
+#' \item{}{\code{\link{user_agreements.create}}}
+#' \item{}{\code{\link{user_agreements.delete}}}
+#' \item{}{\code{\link{user_agreements.get}}}
+#' \item{}{\code{\link{user_agreements.list}}}
+#' \item{}{\code{\link{user_agreements.new}}}
+#' \item{}{\code{\link{user_agreements.sign}}}
+#' \item{}{\code{\link{user_agreements.signatures}}}
+#' \item{}{\code{\link{user_agreements.update}}}
+#' \item{}{\code{\link{users.activate}}}
+#' \item{}{\code{\link{users.create}}}
+#' \item{}{\code{\link{users.current}}}
+#' \item{}{\code{\link{users.delete}}}
+#' \item{}{\code{\link{users.get}}}
+#' \item{}{\code{\link{users.list}}}
+#' \item{}{\code{\link{users.setup}}}
+#' \item{}{\code{\link{users.system}}}
+#' \item{}{\code{\link{users.unsetup}}}
+#' \item{}{\code{\link{users.update}}}
+#' \item{}{\code{\link{users.update_uuid}}}
+#' \item{}{\code{\link{virtual_machines.create}}}
+#' \item{}{\code{\link{virtual_machines.delete}}}
+#' \item{}{\code{\link{virtual_machines.get}}}
+#' \item{}{\code{\link{virtual_machines.get_all_logins}}}
+#' \item{}{\code{\link{virtual_machines.list}}}
+#' \item{}{\code{\link{virtual_machines.logins}}}
+#' \item{}{\code{\link{virtual_machines.update}}}
+#' \item{}{\code{\link{workflows.create}}}
+#' \item{}{\code{\link{workflows.delete}}}
+#' \item{}{\code{\link{workflows.get}}}
+#' \item{}{\code{\link{workflows.list}}}
+#' \item{}{\code{\link{workflows.update}}}
+#' }
+#'
+#' @name Arvados
+#' @examples
+#' \dontrun{
+#' arv <- Arvados$new("your Arvados token", "example.arvadosapi.com")
+#'
+#' collection <- arv$collections.get("uuid")
+#'
+#' collectionList <- arv$collections.list(list(list("name", "like", "Test%")))
+#' collectionList <- listAll(arv$collections.list, list(list("name", "like", "Test%")))
+#'
+#' deletedCollection <- arv$collections.delete("uuid")
+#'
+#' updatedCollection <- arv$collections.update(list(name = "New name", description = "New description")
+#' "uuid")
+#'
+#' createdCollection <- arv$collections.create(list(name = "Example",
+#' description = "This is a test collection"))
+#' }
NULL
-#' nodes.update is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.update(node, uuid, assign_slot = NULL)
-#' @param node Node object.
-#' @param uuid The UUID of the Node in question.
-#' @param assign_slot assign slot and hostname
-#' @return Node object.
-#' @name nodes.update
-NULL
+#' @export
+Arvados <- R6::R6Class(
-#' nodes.delete is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.delete(uuid)
-#' @param uuid The UUID of the Node in question.
-#' @return Node object.
-#' @name nodes.delete
-NULL
+ "Arvados",
-#' nodes.ping is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.ping(uuid, ping_secret)
-#' @param uuid
-#' @param ping_secret
-#' @return Node object.
-#' @name nodes.ping
-NULL
+ public = list(
-#' nodes.list is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return NodeList object.
-#' @name nodes.list
-NULL
+ initialize = function(authToken = NULL, hostName = NULL, numRetries = 0)
+ {
+ if(!is.null(hostName))
+ Sys.setenv(ARVADOS_API_HOST = hostName)
-#' nodes.show is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.show(uuid)
-#' @param uuid
-#' @return Node object.
-#' @name nodes.show
-NULL
+ if(!is.null(authToken))
+ Sys.setenv(ARVADOS_API_TOKEN = authToken)
-#' nodes.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.destroy(uuid)
-#' @param uuid
-#' @return Node object.
-#' @name nodes.destroy
-NULL
+ hostName <- Sys.getenv("ARVADOS_API_HOST")
+ token <- Sys.getenv("ARVADOS_API_TOKEN")
-#' repositories.get is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.get(uuid)
-#' @param uuid The UUID of the Repository in question.
-#' @return Repository object.
-#' @name repositories.get
-NULL
+ if(hostName == "" | token == "")
+ stop(paste("Please provide host name and authentification token",
+ "or set ARVADOS_API_HOST and ARVADOS_API_TOKEN",
+ "environment variables."))
-#' repositories.index is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return RepositoryList object.
-#' @name repositories.index
-NULL
+ private$token <- token
+ private$host <- paste0("https://", hostName, "/arvados/v1/")
+ private$numRetries <- numRetries
+ private$REST <- RESTService$new(token, hostName,
+ HttpRequest$new(), HttpParser$new(),
+ numRetries)
-#' repositories.create is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.create(repository,
-#' ensure_unique_name = "false")
-#' @param repository Repository object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Repository object.
-#' @name repositories.create
-NULL
+ },
-#' repositories.update is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.update(repository,
-#' uuid)
-#' @param repository Repository object.
-#' @param uuid The UUID of the Repository in question.
-#' @return Repository object.
-#' @name repositories.update
-NULL
-
-#' repositories.delete is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.delete(uuid)
-#' @param uuid The UUID of the Repository in question.
-#' @return Repository object.
-#' @name repositories.delete
-NULL
-
-#' repositories.get_all_permissions is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.get_all_permissions(NULL)
-#' @return Repository object.
-#' @name repositories.get_all_permissions
-NULL
-
-#' repositories.list is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return RepositoryList object.
-#' @name repositories.list
-NULL
-
-#' repositories.show is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.show(uuid)
-#' @param uuid
-#' @return Repository object.
-#' @name repositories.show
-NULL
-
-#' repositories.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.destroy(uuid)
-#' @param uuid
-#' @return Repository object.
-#' @name repositories.destroy
-NULL
-
-#' specimens.get is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.get(uuid)
-#' @param uuid The UUID of the Specimen in question.
-#' @return Specimen object.
-#' @name specimens.get
-NULL
-
-#' specimens.index is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return SpecimenList object.
-#' @name specimens.index
-NULL
-
-#' specimens.create is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.create(specimen,
-#' ensure_unique_name = "false")
-#' @param specimen Specimen object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Specimen object.
-#' @name specimens.create
-NULL
-
-#' specimens.update is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.update(specimen,
-#' uuid)
-#' @param specimen Specimen object.
-#' @param uuid The UUID of the Specimen in question.
-#' @return Specimen object.
-#' @name specimens.update
-NULL
-
-#' specimens.delete is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.delete(uuid)
-#' @param uuid The UUID of the Specimen in question.
-#' @return Specimen object.
-#' @name specimens.delete
-NULL
-
-#' specimens.list is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return SpecimenList object.
-#' @name specimens.list
-NULL
-
-#' specimens.show is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.show(uuid)
-#' @param uuid
-#' @return Specimen object.
-#' @name specimens.show
-NULL
-
-#' specimens.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.destroy(uuid)
-#' @param uuid
-#' @return Specimen object.
-#' @name specimens.destroy
-NULL
-
-#' logs.get is a method defined in Arvados class.
-#'
-#' @usage arv$logs.get(uuid)
-#' @param uuid The UUID of the Log in question.
-#' @return Log object.
-#' @name logs.get
-NULL
-
-#' logs.index is a method defined in Arvados class.
-#'
-#' @usage arv$logs.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return LogList object.
-#' @name logs.index
-NULL
-
-#' logs.create is a method defined in Arvados class.
-#'
-#' @usage arv$logs.create(log, ensure_unique_name = "false")
-#' @param log Log object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Log object.
-#' @name logs.create
-NULL
-
-#' logs.update is a method defined in Arvados class.
-#'
-#' @usage arv$logs.update(log, uuid)
-#' @param log Log object.
-#' @param uuid The UUID of the Log in question.
-#' @return Log object.
-#' @name logs.update
-NULL
-
-#' logs.delete is a method defined in Arvados class.
-#'
-#' @usage arv$logs.delete(uuid)
-#' @param uuid The UUID of the Log in question.
-#' @return Log object.
-#' @name logs.delete
-NULL
-
-#' logs.list is a method defined in Arvados class.
-#'
-#' @usage arv$logs.list(filters = NULL, where = NULL,
-#' order = NULL, select = NULL, distinct = NULL,
-#' limit = "100", offset = "0", count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return LogList object.
-#' @name logs.list
-NULL
-
-#' logs.show is a method defined in Arvados class.
-#'
-#' @usage arv$logs.show(uuid)
-#' @param uuid
-#' @return Log object.
-#' @name logs.show
-NULL
-
-#' logs.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$logs.destroy(uuid)
-#' @param uuid
-#' @return Log object.
-#' @name logs.destroy
-NULL
-
-#' traits.get is a method defined in Arvados class.
-#'
-#' @usage arv$traits.get(uuid)
-#' @param uuid The UUID of the Trait in question.
-#' @return Trait object.
-#' @name traits.get
-NULL
-
-#' traits.index is a method defined in Arvados class.
-#'
-#' @usage arv$traits.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return TraitList object.
-#' @name traits.index
-NULL
-
-#' traits.create is a method defined in Arvados class.
-#'
-#' @usage arv$traits.create(trait, ensure_unique_name = "false")
-#' @param trait Trait object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Trait object.
-#' @name traits.create
-NULL
-
-#' traits.update is a method defined in Arvados class.
-#'
-#' @usage arv$traits.update(trait, uuid)
-#' @param trait Trait object.
-#' @param uuid The UUID of the Trait in question.
-#' @return Trait object.
-#' @name traits.update
-NULL
-
-#' traits.delete is a method defined in Arvados class.
-#'
-#' @usage arv$traits.delete(uuid)
-#' @param uuid The UUID of the Trait in question.
-#' @return Trait object.
-#' @name traits.delete
-NULL
-
-#' traits.list is a method defined in Arvados class.
-#'
-#' @usage arv$traits.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return TraitList object.
-#' @name traits.list
-NULL
-
-#' traits.show is a method defined in Arvados class.
-#'
-#' @usage arv$traits.show(uuid)
-#' @param uuid
-#' @return Trait object.
-#' @name traits.show
-NULL
-
-#' traits.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$traits.destroy(uuid)
-#' @param uuid
-#' @return Trait object.
-#' @name traits.destroy
-NULL
-
-#' virtual_machines.get is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.get(uuid)
-#' @param uuid The UUID of the VirtualMachine in question.
-#' @return VirtualMachine object.
-#' @name virtual_machines.get
-NULL
-
-#' virtual_machines.index is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return VirtualMachineList object.
-#' @name virtual_machines.index
-NULL
-
-#' virtual_machines.create is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.create(virtualmachine,
-#' ensure_unique_name = "false")
-#' @param virtualMachine VirtualMachine object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return VirtualMachine object.
-#' @name virtual_machines.create
-NULL
-
-#' virtual_machines.update is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.update(virtualmachine,
-#' uuid)
-#' @param virtualMachine VirtualMachine object.
-#' @param uuid The UUID of the VirtualMachine in question.
-#' @return VirtualMachine object.
-#' @name virtual_machines.update
-NULL
-
-#' virtual_machines.delete is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.delete(uuid)
-#' @param uuid The UUID of the VirtualMachine in question.
-#' @return VirtualMachine object.
-#' @name virtual_machines.delete
-NULL
-
-#' virtual_machines.logins is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.logins(uuid)
-#' @param uuid
-#' @return VirtualMachine object.
-#' @name virtual_machines.logins
-NULL
-
-#' virtual_machines.get_all_logins is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.get_all_logins(NULL)
-#' @return VirtualMachine object.
-#' @name virtual_machines.get_all_logins
-NULL
-
-#' virtual_machines.list is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return VirtualMachineList object.
-#' @name virtual_machines.list
-NULL
-
-#' virtual_machines.show is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.show(uuid)
-#' @param uuid
-#' @return VirtualMachine object.
-#' @name virtual_machines.show
-NULL
-
-#' virtual_machines.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.destroy(uuid)
-#' @param uuid
-#' @return VirtualMachine object.
-#' @name virtual_machines.destroy
-NULL
-
-#' workflows.get is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.get(uuid)
-#' @param uuid The UUID of the Workflow in question.
-#' @return Workflow object.
-#' @name workflows.get
-NULL
-
-#' workflows.index is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return WorkflowList object.
-#' @name workflows.index
-NULL
-
-#' workflows.create is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.create(workflow,
-#' ensure_unique_name = "false")
-#' @param workflow Workflow object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Workflow object.
-#' @name workflows.create
-NULL
-
-#' workflows.update is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.update(workflow,
-#' uuid)
-#' @param workflow Workflow object.
-#' @param uuid The UUID of the Workflow in question.
-#' @return Workflow object.
-#' @name workflows.update
-NULL
-
-#' workflows.delete is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.delete(uuid)
-#' @param uuid The UUID of the Workflow in question.
-#' @return Workflow object.
-#' @name workflows.delete
-NULL
-
-#' workflows.list is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return WorkflowList object.
-#' @name workflows.list
-NULL
-
-#' workflows.show is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.show(uuid)
-#' @param uuid
-#' @return Workflow object.
-#' @name workflows.show
-NULL
-
-#' workflows.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.destroy(uuid)
-#' @param uuid
-#' @return Workflow object.
-#' @name workflows.destroy
-NULL
-
-#' groups.get is a method defined in Arvados class.
-#'
-#' @usage arv$groups.get(uuid)
-#' @param uuid The UUID of the Group in question.
-#' @return Group object.
-#' @name groups.get
-NULL
-
-#' groups.index is a method defined in Arvados class.
-#'
-#' @usage arv$groups.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact", include_trash = NULL)
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @param include_trash Include items whose is_trashed attribute is true.
-#' @return GroupList object.
-#' @name groups.index
-NULL
-
-#' groups.create is a method defined in Arvados class.
-#'
-#' @usage arv$groups.create(group, ensure_unique_name = "false")
-#' @param group Group object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Group object.
-#' @name groups.create
-NULL
-
-#' groups.update is a method defined in Arvados class.
-#'
-#' @usage arv$groups.update(group, uuid)
-#' @param group Group object.
-#' @param uuid The UUID of the Group in question.
-#' @return Group object.
-#' @name groups.update
-NULL
-
-#' groups.delete is a method defined in Arvados class.
-#'
-#' @usage arv$groups.delete(uuid)
-#' @param uuid The UUID of the Group in question.
-#' @return Group object.
-#' @name groups.delete
-NULL
-
-#' groups.contents is a method defined in Arvados class.
-#'
-#' @usage arv$groups.contents(filters = NULL,
-#' where = NULL, order = NULL, distinct = NULL,
-#' limit = "100", offset = "0", count = "exact",
-#' include_trash = NULL, uuid = NULL, recursive = NULL)
-#' @param filters
-#' @param where
-#' @param order
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @param include_trash Include items whose is_trashed attribute is true.
-#' @param uuid
-#' @param recursive Include contents from child groups recursively.
-#' @return Group object.
-#' @name groups.contents
-NULL
-
-#' groups.trash is a method defined in Arvados class.
-#'
-#' @usage arv$groups.trash(uuid)
-#' @param uuid
-#' @return Group object.
-#' @name groups.trash
-NULL
-
-#' groups.untrash is a method defined in Arvados class.
-#'
-#' @usage arv$groups.untrash(uuid)
-#' @param uuid
-#' @return Group object.
-#' @name groups.untrash
-NULL
-
-#' groups.list is a method defined in Arvados class.
-#'
-#' @usage arv$groups.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact", include_trash = NULL)
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @param include_trash Include items whose is_trashed attribute is true.
-#' @return GroupList object.
-#' @name groups.list
-NULL
-
-#' groups.show is a method defined in Arvados class.
-#'
-#' @usage arv$groups.show(uuid)
-#' @param uuid
-#' @return Group object.
-#' @name groups.show
-NULL
-
-#' groups.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$groups.destroy(uuid)
-#' @param uuid
-#' @return Group object.
-#' @name groups.destroy
-NULL
-
-#' user_agreements.get is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.get(uuid)
-#' @param uuid The UUID of the UserAgreement in question.
-#' @return UserAgreement object.
-#' @name user_agreements.get
-NULL
-
-#' user_agreements.index is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return UserAgreementList object.
-#' @name user_agreements.index
-NULL
-
-#' user_agreements.create is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.create(useragreement,
-#' ensure_unique_name = "false")
-#' @param userAgreement UserAgreement object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return UserAgreement object.
-#' @name user_agreements.create
-NULL
-
-#' user_agreements.update is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.update(useragreement,
-#' uuid)
-#' @param userAgreement UserAgreement object.
-#' @param uuid The UUID of the UserAgreement in question.
-#' @return UserAgreement object.
-#' @name user_agreements.update
-NULL
-
-#' user_agreements.delete is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.delete(uuid)
-#' @param uuid The UUID of the UserAgreement in question.
-#' @return UserAgreement object.
-#' @name user_agreements.delete
-NULL
-
-#' user_agreements.signatures is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.signatures(NULL)
-#' @return UserAgreement object.
-#' @name user_agreements.signatures
-NULL
-
-#' user_agreements.sign is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.sign(NULL)
-#' @return UserAgreement object.
-#' @name user_agreements.sign
-NULL
-
-#' user_agreements.list is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return UserAgreementList object.
-#' @name user_agreements.list
-NULL
-
-#' user_agreements.new is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.new(NULL)
-#' @return UserAgreement object.
-#' @name user_agreements.new
-NULL
-
-#' user_agreements.show is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.show(uuid)
-#' @param uuid
-#' @return UserAgreement object.
-#' @name user_agreements.show
-NULL
-
-#' user_agreements.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.destroy(uuid)
-#' @param uuid
-#' @return UserAgreement object.
-#' @name user_agreements.destroy
-NULL
-
-#' @export
-Arvados <- R6::R6Class(
-
- "Arvados",
-
- public = list(
-
- initialize = function(authToken = NULL, hostName = NULL, numRetries = 0)
- {
- if(!is.null(hostName))
- Sys.setenv(ARVADOS_API_HOST = hostName)
-
- if(!is.null(authToken))
- Sys.setenv(ARVADOS_API_TOKEN = authToken)
-
- hostName <- Sys.getenv("ARVADOS_API_HOST")
- token <- Sys.getenv("ARVADOS_API_TOKEN")
-
- if(hostName == "" | token == "")
- stop(paste("Please provide host name and authentification token",
- "or set ARVADOS_API_HOST and ARVADOS_API_TOKEN",
- "environment variables."))
-
- private$token <- token
- private$host <- paste0("https://", hostName, "/arvados/v1/")
- private$numRetries <- numRetries
- private$REST <- RESTService$new(token, hostName,
- HttpRequest$new(), HttpParser$new(),
- numRetries)
-
- },
-
- users.get = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("users")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.create = function(user, ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("users")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(user) > 0)
- body <- jsonlite::toJSON(list(user = user),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.update = function(user, uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(user) > 0)
- body <- jsonlite::toJSON(list(user = user),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.delete = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.current = function()
- {
- endPoint <- stringr::str_interp("users/current")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.system = function()
- {
- endPoint <- stringr::str_interp("users/system")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.activate = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}/activate")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.setup = function(user = NULL, openid_prefix = NULL,
- repo_name = NULL, vm_uuid = NULL, send_notification_email = "false")
- {
- endPoint <- stringr::str_interp("users/setup")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(user = user, openid_prefix = openid_prefix,
- repo_name = repo_name, vm_uuid = vm_uuid,
- send_notification_email = send_notification_email)
-
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.unsetup = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}/unsetup")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.update_uuid = function(uuid, new_uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}/update_uuid")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(new_uuid = new_uuid)
-
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("users")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.show = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.get = function(uuid)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("api_client_authorizations")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.create = function(apiclientauthorization,
- ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("api_client_authorizations")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(apiclientauthorization) > 0)
- body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.update = function(apiclientauthorization, uuid)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(apiclientauthorization) > 0)
- body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.delete = function(uuid)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.create_system_auth = function(api_client_id = NULL, scopes = NULL)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/create_system_auth")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(api_client_id = api_client_id,
- scopes = scopes)
-
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.current = function()
- {
- endPoint <- stringr::str_interp("api_client_authorizations/current")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("api_client_authorizations")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.show = function(uuid)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.get = function(uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("api_clients")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.create = function(apiclient, ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("api_clients")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(apiclient) > 0)
- body <- jsonlite::toJSON(list(apiclient = apiclient),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.update = function(apiclient, uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(apiclient) > 0)
- body <- jsonlite::toJSON(list(apiclient = apiclient),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.delete = function(uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("api_clients")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.show = function(uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.get = function(uuid)
- {
- endPoint <- stringr::str_interp("container_requests/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("container_requests")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.create = function(containerrequest,
- ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("container_requests")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(containerrequest) > 0)
- body <- jsonlite::toJSON(list(containerrequest = containerrequest),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.update = function(containerrequest, uuid)
- {
- endPoint <- stringr::str_interp("container_requests/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(containerrequest) > 0)
- body <- jsonlite::toJSON(list(containerrequest = containerrequest),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.delete = function(uuid)
- {
- endPoint <- stringr::str_interp("container_requests/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("container_requests")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.show = function(uuid)
- {
- endPoint <- stringr::str_interp("container_requests/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("container_requests/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.get = function(uuid)
- {
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("authorized_keys")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.create = function(authorizedkey,
- ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("authorized_keys")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(authorizedkey) > 0)
- body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.update = function(authorizedkey, uuid)
- {
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(authorizedkey) > 0)
- body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.delete = function(uuid)
- {
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("authorized_keys")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.show = function(uuid)
- {
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- collections.get = function(uuid)
- {
- endPoint <- stringr::str_interp("collections/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- collections.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact", include_trash = NULL)
- {
- endPoint <- stringr::str_interp("collections")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count,
- include_trash = include_trash)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- collections.create = function(collection, ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("collections")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(collection) > 0)
- body <- jsonlite::toJSON(list(collection = collection),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- collections.update = function(collection, uuid)
- {
- endPoint <- stringr::str_interp("collections/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(collection) > 0)
- body <- jsonlite::toJSON(list(collection = collection),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
+ projects.get = function(uuid)
+ {
+ self$groups.get(uuid)
},
- collections.delete = function(uuid)
+ projects.create = function(group, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("collections/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
+ group <- c("group_class" = "project", group)
+ self$groups.create(group, ensure_unique_name)
},
- collections.provenance = function(uuid)
+ projects.update = function(group, uuid)
{
- endPoint <- stringr::str_interp("collections/${uuid}/provenance")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
+ group <- c("group_class" = "project", group)
+ self$groups.update(group, uuid)
},
- collections.used_by = function(uuid)
+ projects.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact",
+ include_trash = NULL)
{
- endPoint <- stringr::str_interp("collections/${uuid}/used_by")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
+ filters[[length(filters) + 1]] <- list("group_class", "=", "project")
+ self$groups.list(filters, where, order, select, distinct,
+ limit, offset, count, include_trash)
},
- collections.trash = function(uuid)
+ projects.delete = function(uuid)
{
- endPoint <- stringr::str_interp("collections/${uuid}/trash")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
+ self$groups.delete(uuid)
},
- collections.untrash = function(uuid)
+ users.get = function(uuid)
{
- endPoint <- stringr::str_interp("collections/${uuid}/untrash")
+ endPoint <- stringr::str_interp("users/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- collections.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact", include_trash = NULL)
+ users.create = function(user, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("collections")
+ endPoint <- stringr::str_interp("users")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count,
- include_trash = include_trash)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(user) > 0)
+ body <- jsonlite::toJSON(list(user = user),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- collections.show = function(uuid)
+ users.update = function(user, uuid)
{
- endPoint <- stringr::str_interp("collections/${uuid}")
+ endPoint <- stringr::str_interp("users/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(user) > 0)
+ body <- jsonlite::toJSON(list(user = user),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- collections.destroy = function(uuid)
+ users.delete = function(uuid)
{
- endPoint <- stringr::str_interp("collections/${uuid}")
+ endPoint <- stringr::str_interp("users/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- containers.get = function(uuid)
+ users.current = function()
{
- endPoint <- stringr::str_interp("containers/${uuid}")
+ endPoint <- stringr::str_interp("users/current")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- containers.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ users.system = function()
{
- endPoint <- stringr::str_interp("containers")
+ endPoint <- stringr::str_interp("users/system")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- containers.create = function(container, ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("containers")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(container) > 0)
- body <- jsonlite::toJSON(list(container = container),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- containers.update = function(container, uuid)
- {
- endPoint <- stringr::str_interp("containers/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(container) > 0)
- body <- jsonlite::toJSON(list(container = container),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- containers.delete = function(uuid)
+ users.activate = function(uuid)
{
- endPoint <- stringr::str_interp("containers/${uuid}")
+ endPoint <- stringr::str_interp("users/${uuid}/activate")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- containers.auth = function(uuid)
+ users.setup = function(user = NULL, openid_prefix = NULL,
+ repo_name = NULL, vm_uuid = NULL, send_notification_email = "false")
{
- endPoint <- stringr::str_interp("containers/${uuid}/auth")
+ endPoint <- stringr::str_interp("users/setup")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(user = user, openid_prefix = openid_prefix,
+ repo_name = repo_name, vm_uuid = vm_uuid,
+ send_notification_email = send_notification_email)
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- containers.lock = function(uuid)
+ users.unsetup = function(uuid)
{
- endPoint <- stringr::str_interp("containers/${uuid}/lock")
+ endPoint <- stringr::str_interp("users/${uuid}/unsetup")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- containers.unlock = function(uuid)
+ users.update_uuid = function(uuid, new_uuid)
{
- endPoint <- stringr::str_interp("containers/${uuid}/unlock")
+ endPoint <- stringr::str_interp("users/${uuid}/update_uuid")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(new_uuid = new_uuid)
body <- NULL
resource
},
- containers.current = function()
+ users.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("containers/current")
+ endPoint <- stringr::str_interp("users")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- containers.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ api_client_authorizations.get = function(uuid)
{
- endPoint <- stringr::str_interp("containers")
+ endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- containers.show = function(uuid)
+ api_client_authorizations.create = function(apiclientauthorization,
+ ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("containers/${uuid}")
+ endPoint <- stringr::str_interp("api_client_authorizations")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(apiclientauthorization) > 0)
+ body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- containers.destroy = function(uuid)
+ api_client_authorizations.update = function(apiclientauthorization, uuid)
{
- endPoint <- stringr::str_interp("containers/${uuid}")
+ endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(apiclientauthorization) > 0)
+ body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.get = function(uuid)
+ api_client_authorizations.delete = function(uuid)
{
- endPoint <- stringr::str_interp("humans/${uuid}")
+ endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ api_client_authorizations.create_system_auth = function(api_client_id = NULL, scopes = NULL)
{
- endPoint <- stringr::str_interp("humans")
+ endPoint <- stringr::str_interp("api_client_authorizations/create_system_auth")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(api_client_id = api_client_id,
+ scopes = scopes)
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.create = function(human, ensure_unique_name = "false")
+ api_client_authorizations.current = function()
{
- endPoint <- stringr::str_interp("humans")
+ endPoint <- stringr::str_interp("api_client_authorizations/current")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(human) > 0)
- body <- jsonlite::toJSON(list(human = human),
- auto_unbox = TRUE)
- else
- body <- NULL
+ queryArgs <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.update = function(human, uuid)
+ api_client_authorizations.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("humans/${uuid}")
+ endPoint <- stringr::str_interp("api_client_authorizations")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
- if(length(human) > 0)
- body <- jsonlite::toJSON(list(human = human),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.delete = function(uuid)
+ containers.get = function(uuid)
{
- endPoint <- stringr::str_interp("humans/${uuid}")
+ endPoint <- stringr::str_interp("containers/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ containers.create = function(container, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("humans")
+ endPoint <- stringr::str_interp("containers")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(container) > 0)
+ body <- jsonlite::toJSON(list(container = container),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.show = function(uuid)
+ containers.update = function(container, uuid)
{
- endPoint <- stringr::str_interp("humans/${uuid}")
+ endPoint <- stringr::str_interp("containers/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(container) > 0)
+ body <- jsonlite::toJSON(list(container = container),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- humans.destroy = function(uuid)
+ containers.delete = function(uuid)
{
- endPoint <- stringr::str_interp("humans/${uuid}")
+ endPoint <- stringr::str_interp("containers/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- job_tasks.get = function(uuid)
+ containers.auth = function(uuid)
{
- endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ endPoint <- stringr::str_interp("containers/${uuid}/auth")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- job_tasks.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ containers.lock = function(uuid)
{
- endPoint <- stringr::str_interp("job_tasks")
+ endPoint <- stringr::str_interp("containers/${uuid}/lock")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- job_tasks.create = function(jobtask, ensure_unique_name = "false")
+ containers.unlock = function(uuid)
{
- endPoint <- stringr::str_interp("job_tasks")
+ endPoint <- stringr::str_interp("containers/${uuid}/unlock")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- NULL
- if(length(jobtask) > 0)
- body <- jsonlite::toJSON(list(jobtask = jobtask),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource
},
- job_tasks.update = function(jobtask, uuid)
+ containers.secret_mounts = function(uuid)
{
- endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ endPoint <- stringr::str_interp("containers/${uuid}/secret_mounts")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(jobtask) > 0)
- body <- jsonlite::toJSON(list(jobtask = jobtask),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- job_tasks.delete = function(uuid)
+ containers.current = function()
{
- endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ endPoint <- stringr::str_interp("containers/current")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- job_tasks.list = function(filters = NULL,
+ containers.list = function(filters = NULL,
where = NULL, order = NULL, select = NULL,
distinct = NULL, limit = "100", offset = "0",
count = "exact")
{
- endPoint <- stringr::str_interp("job_tasks")
+ endPoint <- stringr::str_interp("containers")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- job_tasks.show = function(uuid)
+ api_clients.get = function(uuid)
{
- endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ endPoint <- stringr::str_interp("api_clients/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- job_tasks.destroy = function(uuid)
+ api_clients.create = function(apiclient, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ endPoint <- stringr::str_interp("api_clients")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(apiclient) > 0)
+ body <- jsonlite::toJSON(list(apiclient = apiclient),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.get = function(uuid)
+ api_clients.update = function(apiclient, uuid)
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("api_clients/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(apiclient) > 0)
+ body <- jsonlite::toJSON(list(apiclient = apiclient),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ api_clients.delete = function(uuid)
{
- endPoint <- stringr::str_interp("links")
+ endPoint <- stringr::str_interp("api_clients/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.create = function(link, ensure_unique_name = "false")
+ api_clients.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("links")
+ endPoint <- stringr::str_interp("api_clients")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
- if(length(link) > 0)
- body <- jsonlite::toJSON(list(link = link),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.update = function(link, uuid)
+ authorized_keys.get = function(uuid)
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(link) > 0)
- body <- jsonlite::toJSON(list(link = link),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.delete = function(uuid)
+ authorized_keys.create = function(authorizedkey,
+ ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("authorized_keys")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(authorizedkey) > 0)
+ body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ authorized_keys.update = function(authorizedkey, uuid)
{
- endPoint <- stringr::str_interp("links")
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
- body <- NULL
+ if(length(authorizedkey) > 0)
+ body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.show = function(uuid)
+ authorized_keys.delete = function(uuid)
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.destroy = function(uuid)
+ authorized_keys.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("authorized_keys")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- links.get_permissions = function(uuid)
+ container_requests.get = function(uuid)
{
- endPoint <- stringr::str_interp("permissions/${uuid}")
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- jobs.get = function(uuid)
+ container_requests.create = function(containerrequest,
+ ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("container_requests")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(containerrequest) > 0)
+ body <- jsonlite::toJSON(list(containerrequest = containerrequest),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ container_requests.update = function(containerrequest, uuid)
{
- endPoint <- stringr::str_interp("jobs")
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
- body <- NULL
+ if(length(containerrequest) > 0)
+ body <- jsonlite::toJSON(list(containerrequest = containerrequest),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.create = function(job, ensure_unique_name = "false",
- find_or_create = "false", filters = NULL,
- minimum_script_version = NULL, exclude_script_versions = NULL)
+ container_requests.delete = function(uuid)
{
- endPoint <- stringr::str_interp("jobs")
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name,
- find_or_create = find_or_create, filters = filters,
- minimum_script_version = minimum_script_version,
- exclude_script_versions = exclude_script_versions)
+ queryArgs <- NULL
- if(length(job) > 0)
- body <- jsonlite::toJSON(list(job = job),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.update = function(job, uuid)
+ container_requests.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("container_requests")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
- if(length(job) > 0)
- body <- jsonlite::toJSON(list(job = job),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.delete = function(uuid)
+ collections.get = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("collections/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.queue = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ collections.create = function(collection, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("jobs/queue")
+ endPoint <- stringr::str_interp("collections")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(collection) > 0)
+ body <- jsonlite::toJSON(list(collection = collection),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.queue_size = function()
+ collections.update = function(collection, uuid)
{
- endPoint <- stringr::str_interp("jobs/queue_size")
+ endPoint <- stringr::str_interp("collections/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(collection) > 0)
+ body <- jsonlite::toJSON(list(collection = collection),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.cancel = function(uuid)
+ collections.delete = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}/cancel")
+ endPoint <- stringr::str_interp("collections/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.lock = function(uuid)
+ collections.provenance = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}/lock")
+ endPoint <- stringr::str_interp("collections/${uuid}/provenance")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ collections.used_by = function(uuid)
{
- endPoint <- stringr::str_interp("jobs")
+ endPoint <- stringr::str_interp("collections/${uuid}/used_by")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- jobs.show = function(uuid)
+ collections.trash = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("collections/${uuid}/trash")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.destroy = function(uuid)
+ collections.untrash = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("collections/${uuid}/untrash")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_disks.get = function(uuid)
+ collections.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact", include_trash = NULL)
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("collections")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count,
+ include_trash = include_trash)
body <- NULL
resource
},
- keep_disks.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ humans.get = function(uuid)
{
- endPoint <- stringr::str_interp("keep_disks")
+ endPoint <- stringr::str_interp("humans/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- keep_disks.create = function(keepdisk, ensure_unique_name = "false")
+ humans.create = function(human, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("keep_disks")
+ endPoint <- stringr::str_interp("humans")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(keepdisk) > 0)
- body <- jsonlite::toJSON(list(keepdisk = keepdisk),
- auto_unbox = TRUE)
+ if(length(human) > 0)
+ body <- jsonlite::toJSON(list(human = human),
+ auto_unbox = TRUE)
else
body <- NULL
resource
},
- keep_disks.update = function(keepdisk, uuid)
+ humans.update = function(human, uuid)
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("humans/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(keepdisk) > 0)
- body <- jsonlite::toJSON(list(keepdisk = keepdisk),
- auto_unbox = TRUE)
+ if(length(human) > 0)
+ body <- jsonlite::toJSON(list(human = human),
+ auto_unbox = TRUE)
else
body <- NULL
resource
},
- keep_disks.delete = function(uuid)
+ humans.delete = function(uuid)
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("humans/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- keep_disks.ping = function(uuid = NULL, ping_secret,
- node_uuid = NULL, filesystem_uuid = NULL,
- service_host = NULL, service_port, service_ssl_flag)
+ humans.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("keep_disks/ping")
+ endPoint <- stringr::str_interp("humans")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(uuid = uuid, ping_secret = ping_secret,
- node_uuid = node_uuid, filesystem_uuid = filesystem_uuid,
- service_host = service_host, service_port = service_port,
- service_ssl_flag = service_ssl_flag)
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_disks.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ job_tasks.get = function(uuid)
{
- endPoint <- stringr::str_interp("keep_disks")
+ endPoint <- stringr::str_interp("job_tasks/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- keep_disks.show = function(uuid)
+ job_tasks.create = function(jobtask, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("job_tasks")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(jobtask) > 0)
+ body <- jsonlite::toJSON(list(jobtask = jobtask),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_disks.destroy = function(uuid)
+ job_tasks.update = function(jobtask, uuid)
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("job_tasks/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(jobtask) > 0)
+ body <- jsonlite::toJSON(list(jobtask = jobtask),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_services.get = function(uuid)
+ job_tasks.delete = function(uuid)
{
- endPoint <- stringr::str_interp("keep_services/${uuid}")
+ endPoint <- stringr::str_interp("job_tasks/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_services.index = function(filters = NULL,
+ job_tasks.list = function(filters = NULL,
where = NULL, order = NULL, select = NULL,
distinct = NULL, limit = "100", offset = "0",
count = "exact")
{
- endPoint <- stringr::str_interp("keep_services")
+ endPoint <- stringr::str_interp("job_tasks")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- keep_services.create = function(keepservice,
- ensure_unique_name = "false")
+ links.get = function(uuid)
{
- endPoint <- stringr::str_interp("keep_services")
+ endPoint <- stringr::str_interp("links/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- NULL
- if(length(keepservice) > 0)
- body <- jsonlite::toJSON(list(keepservice = keepservice),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_services.update = function(keepservice, uuid)
+ links.create = function(link, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("keep_services/${uuid}")
+ endPoint <- stringr::str_interp("links")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(keepservice) > 0)
- body <- jsonlite::toJSON(list(keepservice = keepservice),
- auto_unbox = TRUE)
+ if(length(link) > 0)
+ body <- jsonlite::toJSON(list(link = link),
+ auto_unbox = TRUE)
else
body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_services.delete = function(uuid)
+ links.update = function(link, uuid)
{
- endPoint <- stringr::str_interp("keep_services/${uuid}")
+ endPoint <- stringr::str_interp("links/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(link) > 0)
+ body <- jsonlite::toJSON(list(link = link),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_services.accessible = function()
+ links.delete = function(uuid)
{
- endPoint <- stringr::str_interp("keep_services/accessible")
+ endPoint <- stringr::str_interp("links/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_services.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ links.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("keep_services")
+ endPoint <- stringr::str_interp("links")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- keep_services.show = function(uuid)
- {
- endPoint <- stringr::str_interp("keep_services/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- keep_services.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("keep_services/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- pipeline_templates.get = function(uuid)
+ links.get_permissions = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ endPoint <- stringr::str_interp("permissions/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- pipeline_templates.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ jobs.get = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_templates")
+ endPoint <- stringr::str_interp("jobs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- pipeline_templates.create = function(pipelinetemplate,
- ensure_unique_name = "false")
+ jobs.create = function(job, ensure_unique_name = "false",
+ find_or_create = "false", filters = NULL,
+ minimum_script_version = NULL, exclude_script_versions = NULL)
{
- endPoint <- stringr::str_interp("pipeline_templates")
+ endPoint <- stringr::str_interp("jobs")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name,
+ find_or_create = find_or_create, filters = filters,
+ minimum_script_version = minimum_script_version,
+ exclude_script_versions = exclude_script_versions)
- if(length(pipelinetemplate) > 0)
- body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate),
- auto_unbox = TRUE)
+ if(length(job) > 0)
+ body <- jsonlite::toJSON(list(job = job),
+ auto_unbox = TRUE)
else
body <- NULL
resource
},
- pipeline_templates.update = function(pipelinetemplate, uuid)
+ jobs.update = function(job, uuid)
{
- endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(pipelinetemplate) > 0)
- body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate),
- auto_unbox = TRUE)
+ if(length(job) > 0)
+ body <- jsonlite::toJSON(list(job = job),
+ auto_unbox = TRUE)
else
body <- NULL
resource
},
- pipeline_templates.delete = function(uuid)
+ jobs.delete = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- pipeline_templates.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ jobs.queue = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("pipeline_templates")
+ endPoint <- stringr::str_interp("jobs/queue")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- pipeline_templates.show = function(uuid)
+ jobs.queue_size = function()
{
- endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ endPoint <- stringr::str_interp("jobs/queue_size")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- pipeline_templates.destroy = function(uuid)
+ jobs.cancel = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}/cancel")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- pipeline_instances.get = function(uuid)
+ jobs.lock = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}/lock")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- pipeline_instances.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ jobs.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("pipeline_instances")
+ endPoint <- stringr::str_interp("jobs")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- pipeline_instances.create = function(pipelineinstance,
- ensure_unique_name = "false")
+ keep_disks.get = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_instances")
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- NULL
- if(length(pipelineinstance) > 0)
- body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- pipeline_instances.update = function(pipelineinstance, uuid)
+ keep_disks.create = function(keepdisk, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ endPoint <- stringr::str_interp("keep_disks")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(pipelineinstance) > 0)
- body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance),
- auto_unbox = TRUE)
+ if(length(keepdisk) > 0)
+ body <- jsonlite::toJSON(list(keepdisk = keepdisk),
+ auto_unbox = TRUE)
else
body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- pipeline_instances.delete = function(uuid)
+ keep_disks.update = function(keepdisk, uuid)
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(keepdisk) > 0)
+ body <- jsonlite::toJSON(list(keepdisk = keepdisk),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- pipeline_instances.cancel = function(uuid)
+ keep_disks.delete = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}/cancel")
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- pipeline_instances.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ keep_disks.ping = function(uuid = NULL, ping_secret,
+ node_uuid = NULL, filesystem_uuid = NULL,
+ service_host = NULL, service_port, service_ssl_flag)
{
- endPoint <- stringr::str_interp("pipeline_instances")
+ endPoint <- stringr::str_interp("keep_disks/ping")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(uuid = uuid, ping_secret = ping_secret,
+ node_uuid = node_uuid, filesystem_uuid = filesystem_uuid,
+ service_host = service_host, service_port = service_port,
+ service_ssl_flag = service_ssl_flag)
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- pipeline_instances.show = function(uuid)
+ keep_disks.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ endPoint <- stringr::str_interp("keep_disks")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- pipeline_instances.destroy = function(uuid)
+ keep_services.get = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ endPoint <- stringr::str_interp("keep_services/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.get = function(uuid)
+ keep_services.create = function(keepservice,
+ ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("nodes/${uuid}")
+ endPoint <- stringr::str_interp("keep_services")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(keepservice) > 0)
+ body <- jsonlite::toJSON(list(keepservice = keepservice),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ keep_services.update = function(keepservice, uuid)
{
- endPoint <- stringr::str_interp("nodes")
+ endPoint <- stringr::str_interp("keep_services/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
- body <- NULL
+ if(length(keepservice) > 0)
+ body <- jsonlite::toJSON(list(keepservice = keepservice),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.create = function(node, ensure_unique_name = "false",
- assign_slot = NULL)
+ keep_services.delete = function(uuid)
{
- endPoint <- stringr::str_interp("nodes")
+ endPoint <- stringr::str_interp("keep_services/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name,
- assign_slot = assign_slot)
+ queryArgs <- NULL
- if(length(node) > 0)
- body <- jsonlite::toJSON(list(node = node),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.update = function(node, uuid, assign_slot = NULL)
+ keep_services.accessible = function()
{
- endPoint <- stringr::str_interp("nodes/${uuid}")
+ endPoint <- stringr::str_interp("keep_services/accessible")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(assign_slot = assign_slot)
+ queryArgs <- NULL
- if(length(node) > 0)
- body <- jsonlite::toJSON(list(node = node),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.delete = function(uuid)
+ keep_services.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("nodes/${uuid}")
+ endPoint <- stringr::str_interp("keep_services")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.ping = function(uuid, ping_secret)
+ pipeline_templates.get = function(uuid)
{
- endPoint <- stringr::str_interp("nodes/${uuid}/ping")
+ endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ping_secret = ping_secret)
+ queryArgs <- NULL
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ pipeline_templates.create = function(pipelinetemplate,
+ ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("nodes")
+ endPoint <- stringr::str_interp("pipeline_templates")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(pipelinetemplate) > 0)
+ body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.show = function(uuid)
+ pipeline_templates.update = function(pipelinetemplate, uuid)
{
- endPoint <- stringr::str_interp("nodes/${uuid}")
+ endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(pipelinetemplate) > 0)
+ body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- nodes.destroy = function(uuid)
+ pipeline_templates.delete = function(uuid)
{
- endPoint <- stringr::str_interp("nodes/${uuid}")
+ endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- repositories.get = function(uuid)
+ pipeline_templates.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("repositories/${uuid}")
+ endPoint <- stringr::str_interp("pipeline_templates")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- repositories.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ pipeline_instances.get = function(uuid)
{
- endPoint <- stringr::str_interp("repositories")
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- repositories.create = function(repository, ensure_unique_name = "false")
+ pipeline_instances.create = function(pipelineinstance,
+ ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("repositories")
+ endPoint <- stringr::str_interp("pipeline_instances")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(repository) > 0)
- body <- jsonlite::toJSON(list(repository = repository),
- auto_unbox = TRUE)
+ if(length(pipelineinstance) > 0)
+ body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance),
+ auto_unbox = TRUE)
else
body <- NULL
resource
},
- repositories.update = function(repository, uuid)
+ pipeline_instances.update = function(pipelineinstance, uuid)
{
- endPoint <- stringr::str_interp("repositories/${uuid}")
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(repository) > 0)
- body <- jsonlite::toJSON(list(repository = repository),
- auto_unbox = TRUE)
+ if(length(pipelineinstance) > 0)
+ body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance),
+ auto_unbox = TRUE)
else
body <- NULL
resource
},
- repositories.delete = function(uuid)
+ pipeline_instances.delete = function(uuid)
{
- endPoint <- stringr::str_interp("repositories/${uuid}")
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- repositories.get_all_permissions = function()
+ pipeline_instances.cancel = function(uuid)
{
- endPoint <- stringr::str_interp("repositories/get_all_permissions")
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}/cancel")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- repositories.list = function(filters = NULL,
+ pipeline_instances.list = function(filters = NULL,
where = NULL, order = NULL, select = NULL,
distinct = NULL, limit = "100", offset = "0",
count = "exact")
{
- endPoint <- stringr::str_interp("repositories")
+ endPoint <- stringr::str_interp("pipeline_instances")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- repositories.show = function(uuid)
+ nodes.get = function(uuid)
{
- endPoint <- stringr::str_interp("repositories/${uuid}")
+ endPoint <- stringr::str_interp("nodes/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- repositories.destroy = function(uuid)
+ nodes.create = function(node, ensure_unique_name = "false",
+ assign_slot = NULL)
{
- endPoint <- stringr::str_interp("repositories/${uuid}")
+ endPoint <- stringr::str_interp("nodes")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name,
+ assign_slot = assign_slot)
- body <- NULL
+ if(length(node) > 0)
+ body <- jsonlite::toJSON(list(node = node),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- specimens.get = function(uuid)
+ nodes.update = function(node, uuid, assign_slot = NULL)
{
- endPoint <- stringr::str_interp("specimens/${uuid}")
+ endPoint <- stringr::str_interp("nodes/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(assign_slot = assign_slot)
- body <- NULL
+ if(length(node) > 0)
+ body <- jsonlite::toJSON(list(node = node),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- specimens.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ nodes.delete = function(uuid)
{
- endPoint <- stringr::str_interp("specimens")
+ endPoint <- stringr::str_interp("nodes/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- specimens.create = function(specimen, ensure_unique_name = "false")
+ nodes.ping = function(uuid, ping_secret)
{
- endPoint <- stringr::str_interp("specimens")
+ endPoint <- stringr::str_interp("nodes/${uuid}/ping")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- list(ping_secret = ping_secret)
- if(length(specimen) > 0)
- body <- jsonlite::toJSON(list(specimen = specimen),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource
},
- specimens.update = function(specimen, uuid)
+ nodes.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("specimens/${uuid}")
+ endPoint <- stringr::str_interp("nodes")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
- if(length(specimen) > 0)
- body <- jsonlite::toJSON(list(specimen = specimen),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- specimens.delete = function(uuid)
+ repositories.get = function(uuid)
{
- endPoint <- stringr::str_interp("specimens/${uuid}")
+ endPoint <- stringr::str_interp("repositories/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- specimens.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ repositories.create = function(repository, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("specimens")
+ endPoint <- stringr::str_interp("repositories")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(repository) > 0)
+ body <- jsonlite::toJSON(list(repository = repository),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- specimens.show = function(uuid)
+ repositories.update = function(repository, uuid)
{
- endPoint <- stringr::str_interp("specimens/${uuid}")
+ endPoint <- stringr::str_interp("repositories/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(repository) > 0)
+ body <- jsonlite::toJSON(list(repository = repository),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- specimens.destroy = function(uuid)
+ repositories.delete = function(uuid)
{
- endPoint <- stringr::str_interp("specimens/${uuid}")
+ endPoint <- stringr::str_interp("repositories/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- logs.get = function(uuid)
+ repositories.get_all_permissions = function()
{
- endPoint <- stringr::str_interp("logs/${uuid}")
+ endPoint <- stringr::str_interp("repositories/get_all_permissions")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- logs.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ repositories.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("logs")
+ endPoint <- stringr::str_interp("repositories")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- logs.create = function(log, ensure_unique_name = "false")
+ specimens.get = function(uuid)
{
- endPoint <- stringr::str_interp("logs")
+ endPoint <- stringr::str_interp("specimens/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- NULL
- if(length(log) > 0)
- body <- jsonlite::toJSON(list(log = log),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- logs.update = function(log, uuid)
+ specimens.create = function(specimen, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("logs/${uuid}")
+ endPoint <- stringr::str_interp("specimens")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(log) > 0)
- body <- jsonlite::toJSON(list(log = log),
- auto_unbox = TRUE)
+ if(length(specimen) > 0)
+ body <- jsonlite::toJSON(list(specimen = specimen),
+ auto_unbox = TRUE)
else
body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- logs.delete = function(uuid)
+ specimens.update = function(specimen, uuid)
{
- endPoint <- stringr::str_interp("logs/${uuid}")
+ endPoint <- stringr::str_interp("specimens/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(specimen) > 0)
+ body <- jsonlite::toJSON(list(specimen = specimen),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- logs.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ specimens.delete = function(uuid)
{
- endPoint <- stringr::str_interp("logs")
+ endPoint <- stringr::str_interp("specimens/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- logs.show = function(uuid)
+ specimens.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("logs/${uuid}")
+ endPoint <- stringr::str_interp("specimens")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- logs.destroy = function(uuid)
+ logs.get = function(uuid)
{
endPoint <- stringr::str_interp("logs/${uuid}")
url <- paste0(private$host, endPoint)
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.get = function(uuid)
+ logs.create = function(log, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("traits/${uuid}")
+ endPoint <- stringr::str_interp("logs")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(log) > 0)
+ body <- jsonlite::toJSON(list(log = log),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ logs.update = function(log, uuid)
{
- endPoint <- stringr::str_interp("traits")
+ endPoint <- stringr::str_interp("logs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
- body <- NULL
+ if(length(log) > 0)
+ body <- jsonlite::toJSON(list(log = log),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.create = function(trait, ensure_unique_name = "false")
+ logs.delete = function(uuid)
{
- endPoint <- stringr::str_interp("traits")
+ endPoint <- stringr::str_interp("logs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- NULL
- if(length(trait) > 0)
- body <- jsonlite::toJSON(list(trait = trait),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.update = function(trait, uuid)
+ logs.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("traits/${uuid}")
+ endPoint <- stringr::str_interp("logs")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
- if(length(trait) > 0)
- body <- jsonlite::toJSON(list(trait = trait),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.delete = function(uuid)
+ traits.get = function(uuid)
{
endPoint <- stringr::str_interp("traits/${uuid}")
url <- paste0(private$host, endPoint)
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ traits.create = function(trait, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("traits")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
+ if(length(trait) > 0)
+ body <- jsonlite::toJSON(list(trait = trait),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.show = function(uuid)
+ traits.update = function(trait, uuid)
{
endPoint <- stringr::str_interp("traits/${uuid}")
url <- paste0(private$host, endPoint)
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(trait) > 0)
+ body <- jsonlite::toJSON(list(trait = trait),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- traits.destroy = function(uuid)
+ traits.delete = function(uuid)
{
endPoint <- stringr::str_interp("traits/${uuid}")
url <- paste0(private$host, endPoint)
resource
},
- virtual_machines.get = function(uuid)
+ traits.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("virtual_machines/${uuid}")
+ endPoint <- stringr::str_interp("traits")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- virtual_machines.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ virtual_machines.get = function(uuid)
{
- endPoint <- stringr::str_interp("virtual_machines")
+ endPoint <- stringr::str_interp("virtual_machines/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
if(length(virtualmachine) > 0)
body <- jsonlite::toJSON(list(virtualmachine = virtualmachine),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
if(length(virtualmachine) > 0)
body <- jsonlite::toJSON(list(virtualmachine = virtualmachine),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- virtual_machines.show = function(uuid)
- {
- endPoint <- stringr::str_interp("virtual_machines/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- virtual_machines.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("virtual_machines/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
workflows.get = function(uuid)
{
endPoint <- stringr::str_interp("workflows/${uuid}")
resource
},
- workflows.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("workflows")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
workflows.create = function(workflow, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("workflows")
if(length(workflow) > 0)
body <- jsonlite::toJSON(list(workflow = workflow),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
if(length(workflow) > 0)
body <- jsonlite::toJSON(list(workflow = workflow),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- workflows.show = function(uuid)
- {
- endPoint <- stringr::str_interp("workflows/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- workflows.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("workflows/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
groups.get = function(uuid)
{
endPoint <- stringr::str_interp("groups/${uuid}")
resource
},
- groups.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact",
- include_trash = NULL)
- {
- endPoint <- stringr::str_interp("groups")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count,
- include_trash = include_trash)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
groups.create = function(group, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("groups")
if(length(group) > 0)
body <- jsonlite::toJSON(list(group = group),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
if(length(group) > 0)
body <- jsonlite::toJSON(list(group = group),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, distinct = distinct, limit = limit,
- offset = offset, count = count, include_trash = include_trash,
- uuid = uuid, recursive = recursive)
+ order = order, distinct = distinct, limit = limit,
+ offset = offset, count = count, include_trash = include_trash,
+ uuid = uuid, recursive = recursive)
body <- NULL
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count,
- include_trash = include_trash)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- groups.show = function(uuid)
- {
- endPoint <- stringr::str_interp("groups/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count,
+ include_trash = include_trash)
body <- NULL
resource
},
- groups.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("groups/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
user_agreements.get = function(uuid)
{
endPoint <- stringr::str_interp("user_agreements/${uuid}")
resource
},
- user_agreements.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("user_agreements")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
user_agreements.create = function(useragreement,
ensure_unique_name = "false")
{
if(length(useragreement) > 0)
body <- jsonlite::toJSON(list(useragreement = useragreement),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
if(length(useragreement) > 0)
body <- jsonlite::toJSON(list(useragreement = useragreement),
- auto_unbox = TRUE)
+ auto_unbox = TRUE)
else
body <- NULL
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
resource
},
- user_agreements.show = function(uuid)
- {
- endPoint <- stringr::str_interp("user_agreements/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- user_agreements.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("user_agreements/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
getHostName = function() private$host,
getToken = function() private$token,
setRESTService = function(newREST) private$REST <- newREST,
projects / arvados.git / blobdiff