9272: Skip slow test when running -short tests.
[arvados.git] / services / crunch-run / crunchrun_test.go
index 1946e5c403e02756f18589bc9a37a8333e2ca7a4..998c4bc17a16f8f932c4ae7adf2469222a0eab4e 100644 (file)
@@ -13,7 +13,12 @@ import (
        . "gopkg.in/check.v1"
        "io"
        "io/ioutil"
+       "log"
+       "os"
+       "os/exec"
+       "sort"
        "strings"
+       "sync"
        "syscall"
        "testing"
        "time"
@@ -32,10 +37,11 @@ var _ = Suite(&TestSuite{})
 type ArvTestClient struct {
        Total   int64
        Calls   int
-       Content arvadosclient.Dict
+       Content []arvadosclient.Dict
        ContainerRecord
        Logs          map[string]*bytes.Buffer
        WasSetRunning bool
+       sync.Mutex
 }
 
 type KeepTestClient struct {
@@ -50,23 +56,23 @@ var hwImageId = "9c31ee32b3d15268a0754e8edc74d4f815ee014b693bc5109058e431dd5caea
 var otherManifest = ". 68a84f561b1d1708c6baff5e019a9ab3+46+Ae5d0af96944a3690becb1decdf60cc1c937f556d@5693216f 0:46:md5sum.txt\n"
 var otherPDH = "a3e8f74c6f101eae01fa08bfb4e49b3a+54"
 
+var fakeAuthUUID = "zzzzz-gj3su-55pqoyepgi2glem"
+var fakeAuthToken = "a3ltuwzqcu2u4sc0q7yhpc2w7s00fdcqecg5d6e0u3pfohmbjt"
+
 type TestDockerClient struct {
-       imageLoaded  string
-       stdoutReader io.ReadCloser
-       stderrReader io.ReadCloser
-       stdoutWriter io.WriteCloser
-       stderrWriter io.WriteCloser
-       fn           func(t *TestDockerClient)
-       finish       chan dockerclient.WaitResult
-       stop         chan bool
-       cwd          string
-       env          []string
+       imageLoaded string
+       logReader   io.ReadCloser
+       logWriter   io.WriteCloser
+       fn          func(t *TestDockerClient)
+       finish      chan dockerclient.WaitResult
+       stop        chan bool
+       cwd         string
+       env         []string
 }
 
 func NewTestDockerClient() *TestDockerClient {
        t := &TestDockerClient{}
-       t.stdoutReader, t.stdoutWriter = io.Pipe()
-       t.stderrReader, t.stderrWriter = io.Pipe()
+       t.logReader, t.logWriter = io.Pipe()
        t.finish = make(chan dockerclient.WaitResult)
        t.stop = make(chan bool)
        t.cwd = "/"
@@ -113,14 +119,8 @@ func (t *TestDockerClient) StartContainer(id string, config *dockerclient.HostCo
        }
 }
 
-func (t *TestDockerClient) ContainerLogs(id string, options *dockerclient.LogOptions) (io.ReadCloser, error) {
-       if options.Stdout {
-               return t.stdoutReader, nil
-       }
-       if options.Stderr {
-               return t.stderrReader, nil
-       }
-       return nil, nil
+func (t *TestDockerClient) AttachContainer(id string, options *dockerclient.AttachOptions) (io.ReadCloser, error) {
+       return t.logReader, nil
 }
 
 func (t *TestDockerClient) Wait(id string) <-chan dockerclient.WaitResult {
@@ -135,35 +135,51 @@ func (this *ArvTestClient) Create(resourceType string,
        parameters arvadosclient.Dict,
        output interface{}) error {
 
+       this.Mutex.Lock()
+       defer this.Mutex.Unlock()
+
        this.Calls += 1
-       this.Content = parameters
+       this.Content = append(this.Content, parameters)
 
        if resourceType == "logs" {
-               et := parameters["event_type"].(string)
+               et := parameters["log"].(arvadosclient.Dict)["event_type"].(string)
                if this.Logs == nil {
                        this.Logs = make(map[string]*bytes.Buffer)
                }
                if this.Logs[et] == nil {
                        this.Logs[et] = &bytes.Buffer{}
                }
-               this.Logs[et].Write([]byte(parameters["properties"].(map[string]string)["text"]))
+               this.Logs[et].Write([]byte(parameters["log"].(arvadosclient.Dict)["properties"].(map[string]string)["text"]))
        }
 
        if resourceType == "collections" && output != nil {
-               mt := parameters["manifest_text"].(string)
-               outmap := output.(map[string]string)
-               outmap["portable_data_hash"] = fmt.Sprintf("%x+%d", md5.Sum([]byte(mt)), len(mt))
+               mt := parameters["collection"].(arvadosclient.Dict)["manifest_text"].(string)
+               outmap := output.(*CollectionRecord)
+               outmap.PortableDataHash = fmt.Sprintf("%x+%d", md5.Sum([]byte(mt)), len(mt))
        }
 
        return nil
 }
 
+func (this *ArvTestClient) Call(method, resourceType, uuid, action string, parameters arvadosclient.Dict, output interface{}) error {
+       switch {
+       case method == "GET" && resourceType == "containers" && action == "auth":
+               return json.Unmarshal([]byte(`{
+                       "kind": "arvados#api_client_authorization",
+                       "uuid": "`+fakeAuthUUID+`",
+                       "api_token": "`+fakeAuthToken+`"
+                       }`), output)
+       default:
+               return fmt.Errorf("Not found")
+       }
+}
+
 func (this *ArvTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
        if resourceType == "collections" {
                if uuid == hwPDH {
-                       output.(*Collection).ManifestText = hwManifest
+                       output.(*CollectionRecord).ManifestText = hwManifest
                } else if uuid == otherPDH {
-                       output.(*Collection).ManifestText = otherManifest
+                       output.(*CollectionRecord).ManifestText = otherManifest
                }
        }
        if resourceType == "containers" {
@@ -173,13 +189,35 @@ func (this *ArvTestClient) Get(resourceType string, uuid string, parameters arva
 }
 
 func (this *ArvTestClient) Update(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) (err error) {
-
-       this.Content = parameters
+       this.Mutex.Lock()
+       defer this.Mutex.Unlock()
+       this.Calls += 1
+       this.Content = append(this.Content, parameters)
        if resourceType == "containers" {
-               if parameters["state"] == "Running" {
+               if parameters["container"].(arvadosclient.Dict)["state"] == "Running" {
                        this.WasSetRunning = true
                }
+       }
+       return nil
+}
 
+// CalledWith returns the parameters from the first API call whose
+// parameters match jpath/string. E.g., CalledWith(c, "foo.bar",
+// "baz") returns parameters with parameters["foo"]["bar"]=="baz". If
+// no call matches, it returns nil.
+func (this *ArvTestClient) CalledWith(jpath, expect string) arvadosclient.Dict {
+       call: for _, content := range this.Content {
+               var v interface{} = content
+               for _, k := range strings.Split(jpath, ".") {
+                       if dict, ok := v.(arvadosclient.Dict); !ok {
+                               continue call
+                       } else {
+                               v = dict[k]
+                       }
+               }
+               if v, ok := v.(string); ok && v == expect {
+                       return content
+               }
        }
        return nil
 }
@@ -210,7 +248,7 @@ func (this *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename str
 func (s *TestSuite) TestLoadImage(c *C) {
        kc := &KeepTestClient{}
        docker := NewTestDockerClient()
-       cr := NewContainerRunner(&ArvTestClient{}, kc, docker)
+       cr := NewContainerRunner(&ArvTestClient{}, kc, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
 
        _, err := cr.Docker.RemoveImage(hwImageId, true)
 
@@ -257,6 +295,10 @@ func (this ArvErrorTestClient) Create(resourceType string,
        return nil
 }
 
+func (this ArvErrorTestClient) Call(method, resourceType, uuid, action string, parameters arvadosclient.Dict, output interface{}) error {
+       return errors.New("ArvError")
+}
+
 func (this ArvErrorTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
        return errors.New("ArvError")
 }
@@ -266,7 +308,7 @@ func (this ArvErrorTestClient) Update(resourceType string, uuid string, paramete
 }
 
 func (this KeepErrorTestClient) PutHB(hash string, buf []byte) (string, int, error) {
-       return "", 0, nil
+       return "", 0, errors.New("KeepError")
 }
 
 func (this KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.ReadCloserWithLen, error) {
@@ -297,36 +339,36 @@ func (this KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, file
 
 func (s *TestSuite) TestLoadImageArvError(c *C) {
        // (1) Arvados error
-       cr := NewContainerRunner(ArvErrorTestClient{}, &KeepTestClient{}, nil)
+       cr := NewContainerRunner(ArvErrorTestClient{}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
        cr.ContainerRecord.ContainerImage = hwPDH
 
        err := cr.LoadImage()
-       c.Check(err.Error(), Equals, "ArvError")
+       c.Check(err.Error(), Equals, "While getting container image collection: ArvError")
 }
 
 func (s *TestSuite) TestLoadImageKeepError(c *C) {
        // (2) Keep error
        docker := NewTestDockerClient()
-       cr := NewContainerRunner(&ArvTestClient{}, KeepErrorTestClient{}, docker)
+       cr := NewContainerRunner(&ArvTestClient{}, KeepErrorTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
        cr.ContainerRecord.ContainerImage = hwPDH
 
        err := cr.LoadImage()
-       c.Check(err.Error(), Equals, "KeepError")
+       c.Check(err.Error(), Equals, "While creating ManifestFileReader for container image: KeepError")
 }
 
 func (s *TestSuite) TestLoadImageCollectionError(c *C) {
        // (3) Collection doesn't contain image
-       cr := NewContainerRunner(&ArvTestClient{}, KeepErrorTestClient{}, nil)
+       cr := NewContainerRunner(&ArvTestClient{}, KeepErrorTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
        cr.ContainerRecord.ContainerImage = otherPDH
 
        err := cr.LoadImage()
-       c.Check(err.Error(), Equals, "First file in the collection does not end in .tar")
+       c.Check(err.Error(), Equals, "First file in the container image collection does not end in .tar")
 }
 
 func (s *TestSuite) TestLoadImageKeepReadError(c *C) {
        // (4) Collection doesn't contain image
        docker := NewTestDockerClient()
-       cr := NewContainerRunner(&ArvTestClient{}, KeepReadErrorTestClient{}, docker)
+       cr := NewContainerRunner(&ArvTestClient{}, KeepReadErrorTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
        cr.ContainerRecord.ContainerImage = hwPDH
 
        err := cr.LoadImage()
@@ -356,15 +398,23 @@ func (this *TestLogs) NewTestLoggingWriter(logstr string) io.WriteCloser {
        return nil
 }
 
+func dockerLog(fd byte, msg string) []byte {
+       by := []byte(msg)
+       header := make([]byte, 8+len(by))
+       header[0] = fd
+       header[7] = byte(len(by))
+       copy(header[8:], by)
+       return header
+}
+
 func (s *TestSuite) TestRunContainer(c *C) {
        docker := NewTestDockerClient()
        docker.fn = func(t *TestDockerClient) {
-               t.stdoutWriter.Write([]byte("Hello world\n"))
-               t.stdoutWriter.Close()
-               t.stderrWriter.Close()
+               t.logWriter.Write(dockerLog(1, "Hello world\n"))
+               t.logWriter.Close()
                t.finish <- dockerclient.WaitResult{}
        }
-       cr := NewContainerRunner(&ArvTestClient{}, &KeepTestClient{}, docker)
+       cr := NewContainerRunner(&ArvTestClient{}, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
 
        var logs TestLogs
        cr.NewLogWriter = logs.NewTestLoggingWriter
@@ -373,10 +423,10 @@ func (s *TestSuite) TestRunContainer(c *C) {
        err := cr.LoadImage()
        c.Check(err, IsNil)
 
-       err = cr.StartContainer()
+       err = cr.CreateContainer()
        c.Check(err, IsNil)
 
-       err = cr.AttachLogs()
+       err = cr.StartContainer()
        c.Check(err, IsNil)
 
        err = cr.WaitFinish()
@@ -389,8 +439,7 @@ func (s *TestSuite) TestRunContainer(c *C) {
 func (s *TestSuite) TestCommitLogs(c *C) {
        api := &ArvTestClient{}
        kc := &KeepTestClient{}
-       cr := NewContainerRunner(api, kc, nil)
-       cr.ContainerRecord.UUID = "zzzzz-zzzzz-zzzzzzzzzzzzzzz"
+       cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
        cr.CrunchLog.Timestamper = (&TestTimestamper{}).Timestamp
 
        cr.CrunchLog.Print("Hello world!")
@@ -400,28 +449,27 @@ func (s *TestSuite) TestCommitLogs(c *C) {
        err := cr.CommitLogs()
        c.Check(err, IsNil)
 
-       c.Check(api.Content["name"], Equals, "logs for zzzzz-zzzzz-zzzzzzzzzzzzzzz")
-       c.Check(api.Content["manifest_text"], Equals, ". 744b2e4553123b02fa7b452ec5c18993+123 0:123:crunch-run.txt\n")
+       c.Check(api.Calls, Equals, 2)
+       c.Check(api.Content[1]["collection"].(arvadosclient.Dict)["name"], Equals, "logs for zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+       c.Check(api.Content[1]["collection"].(arvadosclient.Dict)["manifest_text"], Equals, ". 744b2e4553123b02fa7b452ec5c18993+123 0:123:crunch-run.txt\n")
        c.Check(*cr.LogsPDH, Equals, "63da7bdacf08c40f604daad80c261e9a+60")
 }
 
 func (s *TestSuite) TestUpdateContainerRecordRunning(c *C) {
        api := &ArvTestClient{}
        kc := &KeepTestClient{}
-       cr := NewContainerRunner(api, kc, nil)
-       cr.ContainerRecord.UUID = "zzzzz-zzzzz-zzzzzzzzzzzzzzz"
+       cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
 
        err := cr.UpdateContainerRecordRunning()
        c.Check(err, IsNil)
 
-       c.Check(api.Content["state"], Equals, "Running")
+       c.Check(api.Content[0]["container"].(arvadosclient.Dict)["state"], Equals, "Running")
 }
 
 func (s *TestSuite) TestUpdateContainerRecordComplete(c *C) {
        api := &ArvTestClient{}
        kc := &KeepTestClient{}
-       cr := NewContainerRunner(api, kc, nil)
-       cr.ContainerRecord.UUID = "zzzzz-zzzzz-zzzzzzzzzzzzzzz"
+       cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
 
        cr.LogsPDH = new(string)
        *cr.LogsPDH = "d3a229d2fe3690c2c3e75a71a153c6a3+60"
@@ -430,35 +478,34 @@ func (s *TestSuite) TestUpdateContainerRecordComplete(c *C) {
        *cr.ExitCode = 42
        cr.finalState = "Complete"
 
-       err := cr.UpdateContainerRecordComplete()
+       err := cr.UpdateContainerRecordFinal()
        c.Check(err, IsNil)
 
-       c.Check(api.Content["log"], Equals, *cr.LogsPDH)
-       c.Check(api.Content["exit_code"], Equals, *cr.ExitCode)
-       c.Check(api.Content["state"], Equals, "Complete")
+       c.Check(api.Content[0]["container"].(arvadosclient.Dict)["log"], Equals, *cr.LogsPDH)
+       c.Check(api.Content[0]["container"].(arvadosclient.Dict)["exit_code"], Equals, *cr.ExitCode)
+       c.Check(api.Content[0]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
 }
 
 func (s *TestSuite) TestUpdateContainerRecordCancelled(c *C) {
        api := &ArvTestClient{}
        kc := &KeepTestClient{}
-       cr := NewContainerRunner(api, kc, nil)
-       cr.ContainerRecord.UUID = "zzzzz-zzzzz-zzzzzzzzzzzzzzz"
+       cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
        cr.Cancelled = true
        cr.finalState = "Cancelled"
 
-       err := cr.UpdateContainerRecordComplete()
+       err := cr.UpdateContainerRecordFinal()
        c.Check(err, IsNil)
 
-       c.Check(api.Content["log"], IsNil)
-       c.Check(api.Content["exit_code"], IsNil)
-       c.Check(api.Content["state"], Equals, "Cancelled")
+       c.Check(api.Content[0]["container"].(arvadosclient.Dict)["log"], IsNil)
+       c.Check(api.Content[0]["container"].(arvadosclient.Dict)["exit_code"], IsNil)
+       c.Check(api.Content[0]["container"].(arvadosclient.Dict)["state"], Equals, "Cancelled")
 }
 
 // Used by the TestFullRun*() test below to DRY up boilerplate setup to do full
-// dress rehersal of the Run() function, starting from a JSON container record.
+// dress rehearsal of the Run() function, starting from a JSON container record.
 func FullRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner) {
        rec := ContainerRecord{}
-       err := json.NewDecoder(strings.NewReader(record)).Decode(&rec)
+       err := json.Unmarshal([]byte(record), &rec)
        c.Check(err, IsNil)
 
        docker := NewTestDockerClient()
@@ -466,13 +513,15 @@ func FullRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvT
        docker.RemoveImage(hwImageId, true)
 
        api = &ArvTestClient{ContainerRecord: rec}
-       cr = NewContainerRunner(api, &KeepTestClient{}, docker)
+       cr = NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+       am := &ArvMountCmdLine{}
+       cr.RunArvMount = am.ArvMountTest
 
-       err = cr.Run("zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+       err = cr.Run()
        c.Check(err, IsNil)
        c.Check(api.WasSetRunning, Equals, true)
 
-       c.Check(api.Content["log"], NotNil)
+       c.Check(api.Content[api.Calls-1]["container"].(arvadosclient.Dict)["log"], NotNil)
 
        if err != nil {
                for k, v := range api.Logs {
@@ -490,19 +539,19 @@ func (s *TestSuite) TestFullRunHello(c *C) {
     "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
     "cwd": ".",
     "environment": {},
-    "mounts": {},
+    "mounts": {"/tmp": {"kind": "tmp"} },
     "output_path": "/tmp",
     "priority": 1,
     "runtime_constraints": {}
 }`, func(t *TestDockerClient) {
-               t.stdoutWriter.Write([]byte("hello world\n"))
-               t.stdoutWriter.Close()
-               t.stderrWriter.Close()
+               t.logWriter.Write(dockerLog(1, "hello world\n"))
+               t.logWriter.Close()
                t.finish <- dockerclient.WaitResult{}
        })
 
-       c.Check(api.Content["exit_code"], Equals, 0)
-       c.Check(api.Content["state"], Equals, "Complete")
+       c.Check(api.Calls, Equals, 7)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
 
        c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "hello world\n"), Equals, true)
 
@@ -514,21 +563,21 @@ func (s *TestSuite) TestFullRunStderr(c *C) {
     "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
     "cwd": ".",
     "environment": {},
-    "mounts": {},
+    "mounts": {"/tmp": {"kind": "tmp"} },
     "output_path": "/tmp",
     "priority": 1,
     "runtime_constraints": {}
 }`, func(t *TestDockerClient) {
-               t.stdoutWriter.Write([]byte("hello\n"))
-               t.stderrWriter.Write([]byte("world\n"))
-               t.stdoutWriter.Close()
-               t.stderrWriter.Close()
+               t.logWriter.Write(dockerLog(1, "hello\n"))
+               t.logWriter.Write(dockerLog(2, "world\n"))
+               t.logWriter.Close()
                t.finish <- dockerclient.WaitResult{ExitCode: 1}
        })
 
-       c.Check(api.Content["log"], NotNil)
-       c.Check(api.Content["exit_code"], Equals, 1)
-       c.Check(api.Content["state"], Equals, "Complete")
+       c.Assert(api.Calls, Equals, 8)
+       c.Check(api.Content[7]["container"].(arvadosclient.Dict)["log"], NotNil)
+       c.Check(api.Content[7]["container"].(arvadosclient.Dict)["exit_code"], Equals, 1)
+       c.Check(api.Content[7]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
 
        c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "hello\n"), Equals, true)
        c.Check(strings.HasSuffix(api.Logs["stderr"].String(), "world\n"), Equals, true)
@@ -540,19 +589,21 @@ func (s *TestSuite) TestFullRunDefaultCwd(c *C) {
     "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
     "cwd": ".",
     "environment": {},
-    "mounts": {},
+    "mounts": {"/tmp": {"kind": "tmp"} },
     "output_path": "/tmp",
     "priority": 1,
     "runtime_constraints": {}
 }`, func(t *TestDockerClient) {
-               t.stdoutWriter.Write([]byte(t.cwd + "\n"))
-               t.stdoutWriter.Close()
-               t.stderrWriter.Close()
+               t.logWriter.Write(dockerLog(1, t.cwd+"\n"))
+               t.logWriter.Close()
                t.finish <- dockerclient.WaitResult{ExitCode: 0}
        })
 
-       c.Check(api.Content["exit_code"], Equals, 0)
-       c.Check(api.Content["state"], Equals, "Complete")
+       c.Check(api.Calls, Equals, 7)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
+
+       log.Print(api.Logs["stdout"].String())
 
        c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "/\n"), Equals, true)
 }
@@ -563,19 +614,19 @@ func (s *TestSuite) TestFullRunSetCwd(c *C) {
     "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
     "cwd": "/bin",
     "environment": {},
-    "mounts": {},
+    "mounts": {"/tmp": {"kind": "tmp"} },
     "output_path": "/tmp",
     "priority": 1,
     "runtime_constraints": {}
 }`, func(t *TestDockerClient) {
-               t.stdoutWriter.Write([]byte(t.cwd + "\n"))
-               t.stdoutWriter.Close()
-               t.stderrWriter.Close()
+               t.logWriter.Write(dockerLog(1, t.cwd+"\n"))
+               t.logWriter.Close()
                t.finish <- dockerclient.WaitResult{ExitCode: 0}
        })
 
-       c.Check(api.Content["exit_code"], Equals, 0)
-       c.Check(api.Content["state"], Equals, "Complete")
+       c.Check(api.Calls, Equals, 7)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
 
        c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "/bin\n"), Equals, true)
 }
@@ -586,42 +637,40 @@ func (s *TestSuite) TestCancel(c *C) {
     "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
     "cwd": ".",
     "environment": {},
-    "mounts": {},
+    "mounts": {"/tmp": {"kind": "tmp"} },
     "output_path": "/tmp",
     "priority": 1,
     "runtime_constraints": {}
 }`
 
        rec := ContainerRecord{}
-       err := json.NewDecoder(strings.NewReader(record)).Decode(&rec)
+       err := json.Unmarshal([]byte(record), &rec)
        c.Check(err, IsNil)
 
        docker := NewTestDockerClient()
        docker.fn = func(t *TestDockerClient) {
                <-t.stop
-               t.stdoutWriter.Write([]byte("foo\n"))
-               t.stdoutWriter.Close()
-               t.stderrWriter.Close()
+               t.logWriter.Write(dockerLog(1, "foo\n"))
+               t.logWriter.Close()
                t.finish <- dockerclient.WaitResult{ExitCode: 0}
        }
        docker.RemoveImage(hwImageId, true)
 
        api := &ArvTestClient{ContainerRecord: rec}
-       cr := NewContainerRunner(api, &KeepTestClient{}, docker)
+       cr := NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+       am := &ArvMountCmdLine{}
+       cr.RunArvMount = am.ArvMountTest
 
        go func() {
                for cr.ContainerID == "" {
-                       time.Sleep(1 * time.Second)
+                       time.Sleep(time.Millisecond)
                }
                cr.SigChan <- syscall.SIGINT
        }()
 
-       err = cr.Run("zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+       err = cr.Run()
 
        c.Check(err, IsNil)
-
-       c.Check(api.Content["log"], NotNil)
-
        if err != nil {
                for k, v := range api.Logs {
                        c.Log(k)
@@ -629,8 +678,9 @@ func (s *TestSuite) TestCancel(c *C) {
                }
        }
 
-       c.Check(api.Content["state"], Equals, "Cancelled")
-
+       c.Assert(api.Calls, Equals, 6)
+       c.Check(api.Content[5]["container"].(arvadosclient.Dict)["log"], IsNil)
+       c.Check(api.Content[5]["container"].(arvadosclient.Dict)["state"], Equals, "Cancelled")
        c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "foo\n"), Equals, true)
 
 }
@@ -641,19 +691,166 @@ func (s *TestSuite) TestFullRunSetEnv(c *C) {
     "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
     "cwd": "/bin",
     "environment": {"FROBIZ": "bilbo"},
-    "mounts": {},
+    "mounts": {"/tmp": {"kind": "tmp"} },
     "output_path": "/tmp",
     "priority": 1,
     "runtime_constraints": {}
 }`, func(t *TestDockerClient) {
-               t.stdoutWriter.Write([]byte(t.env[0][7:] + "\n"))
-               t.stdoutWriter.Close()
-               t.stderrWriter.Close()
+               t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+               t.logWriter.Close()
                t.finish <- dockerclient.WaitResult{ExitCode: 0}
        })
 
-       c.Check(api.Content["exit_code"], Equals, 0)
-       c.Check(api.Content["state"], Equals, "Complete")
+       c.Check(api.Calls, Equals, 7)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0)
+       c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
 
        c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "bilbo\n"), Equals, true)
 }
+
+type ArvMountCmdLine struct {
+       Cmd   []string
+       token string
+}
+
+func (am *ArvMountCmdLine) ArvMountTest(c []string, token string) (*exec.Cmd, error) {
+       am.Cmd = c
+       am.token = token
+       return nil, nil
+}
+
+func (s *TestSuite) TestSetupMounts(c *C) {
+       api := &ArvTestClient{}
+       kc := &KeepTestClient{}
+       cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+       am := &ArvMountCmdLine{}
+       cr.RunArvMount = am.ArvMountTest
+
+       i := 0
+       cr.MkTempDir = func(string, string) (string, error) {
+               i += 1
+               d := fmt.Sprintf("/tmp/mktmpdir%d", i)
+               os.Mkdir(d, os.ModePerm)
+               return d, nil
+       }
+
+       {
+               cr.ContainerRecord.Mounts = make(map[string]Mount)
+               cr.ContainerRecord.Mounts["/tmp"] = Mount{Kind: "tmp"}
+               cr.OutputPath = "/tmp"
+
+               err := cr.SetupMounts()
+               c.Check(err, IsNil)
+               c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", "/tmp/mktmpdir1"})
+               c.Check(cr.Binds, DeepEquals, []string{"/tmp/mktmpdir2:/tmp"})
+               cr.CleanupDirs()
+       }
+
+       {
+               i = 0
+               cr.ContainerRecord.Mounts = make(map[string]Mount)
+               cr.ContainerRecord.Mounts["/keeptmp"] = Mount{Kind: "collection", Writable: true}
+               cr.OutputPath = "/keeptmp"
+
+               os.MkdirAll("/tmp/mktmpdir1/tmp0", os.ModePerm)
+
+               err := cr.SetupMounts()
+               c.Check(err, IsNil)
+               c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "/tmp/mktmpdir1"})
+               c.Check(cr.Binds, DeepEquals, []string{"/tmp/mktmpdir1/tmp0:/keeptmp"})
+               cr.CleanupDirs()
+       }
+
+       {
+               i = 0
+               cr.ContainerRecord.Mounts = make(map[string]Mount)
+               cr.ContainerRecord.Mounts["/keepinp"] = Mount{Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"}
+               cr.ContainerRecord.Mounts["/keepout"] = Mount{Kind: "collection", Writable: true}
+               cr.OutputPath = "/keepout"
+
+               os.MkdirAll("/tmp/mktmpdir1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
+               os.MkdirAll("/tmp/mktmpdir1/tmp0", os.ModePerm)
+
+               err := cr.SetupMounts()
+               c.Check(err, IsNil)
+               c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "/tmp/mktmpdir1"})
+               var ss sort.StringSlice = cr.Binds
+               ss.Sort()
+               c.Check(cr.Binds, DeepEquals, []string{"/tmp/mktmpdir1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro",
+                       "/tmp/mktmpdir1/tmp0:/keepout"})
+               cr.CleanupDirs()
+       }
+}
+
+func (s *TestSuite) TestStdout(c *C) {
+       helperRecord := `{`
+       helperRecord += `"command": ["/bin/sh", "-c", "echo $FROBIZ"],`
+       helperRecord += `"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",`
+       helperRecord += `"cwd": "/bin",`
+       helperRecord += `"environment": {"FROBIZ": "bilbo"},`
+       helperRecord += `"mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} },`
+       helperRecord += `"output_path": "/tmp",`
+       helperRecord += `"priority": 1,`
+       helperRecord += `"runtime_constraints": {}`
+       helperRecord += `}`
+
+       api, _ := FullRunHelper(c, helperRecord, func(t *TestDockerClient) {
+               t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+               t.logWriter.Close()
+               t.finish <- dockerclient.WaitResult{ExitCode: 0}
+       })
+
+       c.Assert(api.Calls, Equals, 6)
+       c.Check(api.Content[5]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0)
+       c.Check(api.Content[5]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
+       c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), Not(IsNil))
+}
+
+// Used by the TestStdoutWithWrongPath*()
+func StdoutErrorRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner, err error) {
+       rec := ContainerRecord{}
+       err = json.Unmarshal([]byte(record), &rec)
+       c.Check(err, IsNil)
+
+       docker := NewTestDockerClient()
+       docker.fn = fn
+       docker.RemoveImage(hwImageId, true)
+
+       api = &ArvTestClient{ContainerRecord: rec}
+       cr = NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+       am := &ArvMountCmdLine{}
+       cr.RunArvMount = am.ArvMountTest
+
+       err = cr.Run()
+       return
+}
+
+func (s *TestSuite) TestStdoutWithWrongPath(c *C) {
+       _, _, err := StdoutErrorRunHelper(c, `{
+    "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path":"/tmpa.out"} },
+    "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+       c.Check(err, NotNil)
+       c.Check(strings.Contains(err.Error(), "Stdout path does not start with OutputPath"), Equals, true)
+}
+
+func (s *TestSuite) TestStdoutWithWrongKindTmp(c *C) {
+       _, _, err := StdoutErrorRunHelper(c, `{
+    "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "tmp", "path":"/tmp/a.out"} },
+    "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+       c.Check(err, NotNil)
+       c.Check(strings.Contains(err.Error(), "Unsupported mount kind 'tmp' for stdout"), Equals, true)
+}
+
+func (s *TestSuite) TestStdoutWithWrongKindCollection(c *C) {
+       _, _, err := StdoutErrorRunHelper(c, `{
+    "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "collection", "path":"/tmp/a.out"} },
+    "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+       c.Check(err, NotNil)
+       c.Check(strings.Contains(err.Error(), "Unsupported mount kind 'collection' for stdout"), Equals, true)
+}