Merge branch 'master' of git.curoverse.com:arvados

[arvados.git] / sdk / cli / bin / crunch-job

diff --git a/sdk/cli/bin/crunch-job b/sdk/cli/bin/crunch-job
index 5d3bfdff7905becb8e141218af552de3ce3e9504..f092558cd75c9241c51625b4246a01ec8ed8dce0 100755 (executable)
--- a/sdk/cli/bin/crunch-job
+++ b/sdk/cli/bin/crunch-job
@@ -139,7 +139,7 @@ $SIG{'USR2'} = sub
 
 
 my $arv = Arvados->new('apiVersion' => 'v1');
-my $metastream;
+my $local_logfile;
 
 my $User = $arv->{'users'}->{'current'}->execute;
 
@@ -185,7 +185,7 @@ else
 $job_id = $Job->{'uuid'};
 
 my $keep_logfile = $job_id . '.log.txt';
-my $local_logfile = File::Temp->new();
+$local_logfile = File::Temp->new();
 
 $Job->{'runtime_constraints'} ||= {};
 $Job->{'runtime_constraints'}->{'max_tasks_per_node'} ||= 0;
@@ -946,13 +946,19 @@ sub reapchildren
   delete $proc{$pid};
 
   # Load new tasks
-  my $newtask_list = $arv->{'job_tasks'}->{'list'}->execute(
-    'where' => {
-      'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid}
-    },
-    'order' => 'qsequence'
-  );
-  foreach my $arvados_task (@{$newtask_list->{'items'}}) {
+  my $newtask_list = [];
+  my $newtask_results;
+  do {
+    $newtask_results = $arv->{'job_tasks'}->{'list'}->execute(
+      'where' => {
+        'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid}
+      },
+      'order' => 'qsequence',
+      'offset' => scalar(@$newtask_list),
+    );
+    push(@$newtask_list, @{$newtask_results->{items}});
+  } while (@{$newtask_results->{items}});
+  foreach my $arvados_task (@$newtask_list) {
     my $jobstep = {
       'level' => $arvados_task->{'sequence'},
       'failures' => 0,
@@ -1245,15 +1251,15 @@ sub Log                         # ($jobstep_id, $logmessage)
   $message =~ s{([^ -\176])}{"\\" . sprintf ("%03o", ord($1))}ge;
   $message .= "\n";
   my $datetime;
-  if ($metastream || -t STDERR) {
+  if ($local_logfile || -t STDERR) {
     my @gmtime = gmtime;
     $datetime = sprintf ("%04d-%02d-%02d_%02d:%02d:%02d",
                         $gmtime[5]+1900, $gmtime[4]+1, @gmtime[3,2,1,0]);
   }
   print STDERR ((-t STDERR) ? ($datetime." ".$message) : $message);
 
-  if ($metastream) {
-    print $metastream $datetime . " " . $message;
+  if ($local_logfile) {
+    print $local_logfile $datetime . " " . $message;
   }
 }
 
@@ -1266,7 +1272,7 @@ sub croak
   freeze() if @jobstep_todo;
   collate_output() if @jobstep_todo;
   cleanup();
-  save_meta() if $metastream;
+  save_meta() if $local_logfile;
   die;
 }
 
@@ -1290,6 +1296,7 @@ sub save_meta
       . quotemeta($local_logfile->filename);
   my $loglocator = `$cmd`;
   die "system $cmd failed: $?" if $?;
+  chomp($loglocator);
 
   $local_logfile = undef;   # the temp file is automatically deleted
   Log (undef, "log manifest is $loglocator");