{% codeblock as python %}
import arvados
api = arvados.api()
-container_request_uuid="qr1hi-xvhdp-zzzzzzzzzzzzzzz"
+container_request_uuid="zzzzz-xvhdp-zzzzzzzzzzzzzzz"
container_request = api.container_requests().get(uuid=container_request_uuid).execute()
print(container_request["mounts"]["/var/lib/cwl/cwl.input.json"])
{% endcodeblock %}
import arvados
import arvados.collection
api = arvados.api()
-container_request_uuid="qr1hi-xvhdp-zzzzzzzzzzzzzzz"
+container_request_uuid="zzzzz-xvhdp-zzzzzzzzzzzzzzz"
container_request = api.container_requests().get(uuid=container_request_uuid).execute()
collection = arvados.collection.CollectionReader(container_request["output_uuid"])
print(collection.open("cwl.output.json").read())
elif c['runtime_status'].get('warning', None):
return 'Warning'
return c['state']
-container_request_uuid = 'qr1hi-xvhdp-zzzzzzzzzzzzzzz'
+container_request_uuid = 'zzzzz-xvhdp-zzzzzzzzzzzzzzz'
print(get_cr_state(container_request_uuid))
{% endcodeblock %}
{% codeblock as python %}
import arvados
api = arvados.api()
-parent_request_uuid = "qr1hi-xvhdp-zzzzzzzzzzzzzzz"
+parent_request_uuid = "zzzzz-xvhdp-zzzzzzzzzzzzzzz"
namefilter = "bwa%" # the "like" filter uses SQL pattern match syntax
container_request = api.container_requests().get(uuid=parent_request_uuid).execute()
parent_container_uuid = container_request["container_uuid"]
{% codeblock as python %}
import arvados
api = arvados.api()
-parent_request_uuid = "qr1hi-xvhdp-zzzzzzzzzzzzzzz"
+parent_request_uuid = "zzzzz-xvhdp-zzzzzzzzzzzzzzz"
namefilter = "bwa%" # the "like" filter uses SQL pattern match syntax
container_request = api.container_requests().get(uuid=parent_request_uuid).execute()
parent_container_uuid = container_request["container_uuid"]
{% codeblock as python %}
import arvados
api = arvados.api()
-parent_request_uuid = "qr1hi-xvhdp-zzzzzzzzzzzzzzz"
+parent_request_uuid = "zzzzz-xvhdp-zzzzzzzzzzzzzzz"
container_request = api.container_requests().get(uuid=parent_request_uuid).execute()
parent_container_uuid = container_request["container_uuid"]
child_requests = api.container_requests().list(filters=[
import arvados
import arvados.collection
api = arvados.api()
-container_request_uuid = "qr1hi-xvhdp-zzzzzzzzzzzzzzz"
+container_request_uuid = "zzzzz-xvhdp-zzzzzzzzzzzzzzz"
container_request = api.container_requests().get(uuid=container_request_uuid).execute()
collection = arvados.collection.CollectionReader(container_request["log_uuid"])
for c in collection:
import arvados
api = arvados.api()
download="https://your.download.server"
-collection_uuid="qr1hi-4zz18-zzzzzzzzzzzzzzz"
+collection_uuid="zzzzz-4zz18-zzzzzzzzzzzzzzz"
token = api.api_client_authorizations().create(body={"api_client_authorization":{"scopes": [
"GET /arvados/v1/collections/%s" % collection_uuid,
"GET /arvados/v1/collections/%s/" % collection_uuid,
import arvados
import arvados.collection
api = arvados.api()
-project_uuid = "qr1hi-tpzed-zzzzzzzzzzzzzzz"
-collection_uuids = ["qr1hi-4zz18-aaaaaaaaaaaaaaa", "qr1hi-4zz18-bbbbbbbbbbbbbbb"]
+project_uuid = "zzzzz-tpzed-zzzzzzzzzzzzzzz"
+collection_uuids = ["zzzzz-4zz18-aaaaaaaaaaaaaaa", "zzzzz-4zz18-bbbbbbbbbbbbbbb"]
combined_manifest = ""
for u in collection_uuids:
c = api.collections().get(uuid=u).execute()
import arvados
import arvados.collection
-project_uuid = "qr1hi-j7d0g-zzzzzzzzzzzzzzz"
+project_uuid = "zzzzz-j7d0g-zzzzzzzzzzzzzzz"
collection_name = "My collection"
filename = "file1.txt"
import arvados
import arvados.collection
-collection_uuid = "qr1hi-4zz18-zzzzzzzzzzzzzzz"
+collection_uuid = "zzzzz-4zz18-zzzzzzzzzzzzzzz"
filename = "file1.txt"
api = arvados.api()